3PQBA

The crystal structure of pregilvocarcin in complex with gilr, an oxidoreductase that catalyzes the terminal step of gilvocarcin biosynthesis
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
492
structure length
492
Chain Sequence
PFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNAALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGELFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGGVMSWLTGTRYMSQADCGDVMGARSASKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRDSVVKSSWFSAWQDAELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSIGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Putative oxidoreductase
publication title The Crystal Structure and Mechanism of an Unusual Oxidoreductase, GilR, Involved in Gilvocarcin V Biosynthesis.
pubmed doi rcsb
source organism Streptomyces griseoflavus
total genus 165
structure length 492
sequence length 492
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3pqbA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3pqbA02
4PVKA 4PWCA 3POPA 3PQBA 5AWVA 2Y08A 3VTEA 2IPIA 3FW7A 4PVHA 3W8XA 5I1VA 3RJ8A 4DNSA 3HSUA 4PVEA 5K8EA 3D2DA 4UD8A 5D79A 5L6GA 3FW8A 3D2JA 3W8ZA 2AXRA 4PWBA 2BVFA 2Y4GA 3FWAA 4PVJA 4XLOA 2WDWA 3TSJA 3W8WA 3GSYA 3TSHA 4PZFA 2BVHA 2UUVA 5L6FA 2Y3RA 4EC3A 3FW9A 5I1WA 2UUUA 1ZR6A 2BVGA 3D2HA 2Y3SA 3RJAA
chains in the Genus database with same CATH superfamily
2NQWA 1QLTA 3PQBA 4ZOHB 5AWVA 3SR6B 4PVHA 4JAYA 3RJ8A 2R2ZA 3HSUA 3S1CA 3NVYB 4MLAA 5G5HB 3I99A 5L6GA 2VFSA 1T3QC 1W1SA 1UXYA 2R8DA 1E8FA 1WYGA 1N62C 2YVSA 3AM9A 1MBTA 1W1QA 1HSKA 3KJMA 2QPMA 1AHVA 3HRDC 5AE1A 2UUUA 5I1WA 2W3SA 3B9JB 2BVGA 4BCAA 3NVZB 1E8HA 1W1RA 4PVKA 2Q85A 3JS8A 2OAIA 4PWCA 4BC7A 4JB1A 1WVFA 2IPIA 3W8XA 1RM6B 4DNSA 4OALA 5K8EA 5D79A 2P4PA 2GQTA 3NVWB 3D2JA 1E0YA 2W55A 4PWBA 3S1DA 3TX1A 3NRZB 3W8WA 1AHZA 3AMZA 1AHUA 1N63C 5G5GB 2W54A 3C0PA 5HHZA 3NVVB 1W1JA 3EUB3 1VAOA 2P3HA 2QKNA 3FW9A 2Y3SA 3LLBA 2GQUA 3POPA 1QLUA 2MBRA 5ADZA 5AE2A 2Y08A 1F0XA 4PVEA 1DIQA 3D2DA 2PLSA 1W1OA 5HQXA 1N61C 4PYTA 1MBBA 2PLIA 1SB3B 3FW8A 5FXFA 1FO4A 2Q4WA 4BBYA 1N60C 3AN1A 2E3TA 2P13A 3FWAA 4PVJA 2WDWA 3TSJA 3GSYA 1FIQB 3TSHA 4HG0A 2Y3RA 4EC3A 1I19A 1W1LA 1W1MA 3LAEA 2AXRA 3RJAA 5AE3A 1V97A 1VDVA 2VFVA 2RK5A 3VTEA 3FW7A 5I1VA 1N5WC 4BC9A 4O95A 3DQ0A 4UD8A 2O3GA 5FXEA 3W8ZA 1JRPA 5HMRA 2EXRA 5FXPA 2BVFA 2W3RA 1FFUC 2Y4GA 2VFTA 4XLOA 3S1FA 1WVEA 3BW7A 1W1KA 3ETRB 2VAOA 2VFUA 3DEDA 1E8GA 3NS1B 3PM9A 5FXDA 4PZFA 2BVHA 1N5XA 2UUVA 5L6FA 1DZNA 1DIIA 2I0KA 3S1EA 1FFVC 4ML8A 1JROA 1ZR6A 3D2HA 2VFRA 1ZXIC
chains in the Genus database with same CATH topology
2NQWA 1QLTA 3PQBA 4ZOHB 5AWVA 3SR6B 4PVHA 4JAYA 3RJ8A 2R2ZA 3HSUA 3S1CA 3NVYB 4MLAA 5G5HB 3I99A 5L6GA 2VFSA 1T3QC 1W1SA 1UXYA 2R8DA 1E8FA 1WYGA 1N62C 2YVSA 3AM9A 1MBTA 1W1QA 1HSKA 3KJMA 2QPMA 1AHVA 3HRDC 5AE1A 2UUUA 5I1WA 2W3SA 3B9JB 2BVGA 4BCAA 3NVZB 1E8HA 1W1RA 4PVKA 2Q85A 3JS8A 2OAIA 4PWCA 4BC7A 4JB1A 1WVFA 2IPIA 3W8XA 1RM6B 4DNSA 4OALA 5K8EA 5D79A 2P4PA 2GQTA 3NVWB 3D2JA 1E0YA 2W55A 4PWBA 3S1DA 3TX1A 3NRZB 3W8WA 1AHZA 3AMZA 1AHUA 1N63C 5G5GB 2W54A 3C0PA 5HHZA 3NVVB 1W1JA 3EUB3 1VAOA 2P3HA 2QKNA 3FW9A 2Y3SA 3LLBA 2GQUA 3POPA 1QLUA 2MBRA 5ADZA 5AE2A 2Y08A 1F0XA 4PVEA 1DIQA 3D2DA 2PLSA 1W1OA 5HQXA 1N61C 4PYTA 1MBBA 2PLIA 1SB3B 3FW8A 5FXFA 1FO4A 2Q4WA 4BBYA 1N60C 3AN1A 2E3TA 2P13A 3FWAA 4PVJA 2WDWA 3TSJA 3GSYA 1FIQB 3TSHA 4HG0A 2Y3RA 4EC3A 1I19A 1W1LA 1W1MA 3LAEA 2AXRA 3RJAA 5AE3A 1V97A 1VDVA 2VFVA 2RK5A 3VTEA 3FW7A 5I1VA 1N5WC 4BC9A 4O95A 3DQ0A 4UD8A 2O3GA 5FXEA 3W8ZA 1JRPA 5HMRA 2EXRA 5FXPA 2BVFA 2W3RA 1FFUC 2Y4GA 2VFTA 4XLOA 3S1FA 1WVEA 3BW7A 1W1KA 3ETRB 2VAOA 2VFUA 3DEDA 1E8GA 3NS1B 3PM9A 5FXDA 4PZFA 2BVHA 1N5XA 2UUVA 5L6FA 1DZNA 1DIIA 2I0KA 3S1EA 1FFVC 4ML8A 1JROA 1ZR6A 3D2HA 2VFRA 1ZXIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVK A;  4PWC A;  3POP A;  3PQB A;  5AWV A;  2Y08 A;  3VTE A;  2IPI A;  3FW7 A;  4PVH A;  3W8X A;  5I1V A;  3RJ8 A;  4DNS A;  3HSU A;  4PVE A;  5K8E A;  3D2D A;  4UD8 A;  5D79 A;  5L6G A;  3FW8 A;  3D2J A;  3W8Z A;  2AXR A;  4PWB A;  2BVF A;  2Y4G A;  3FWA A;  4PVJ A;  4XLO A;  2WDW A;  3TSJ A;  3W8W A;  3GSY A;  3TSH A;  4PZF A;  2BVH A;  2UUV A;  5L6F A;  2Y3R A;  4EC3 A;  3FW9 A;  5I1W A;  2UUU A;  1ZR6 A;  2BVG A;  3D2H A;  2Y3S A;  3RJA A; 
#chains in the Genus database with same CATH topology
 2NQW A;  1QLT A;  3PQB A;  4ZOH B;  5AWV A;  3SR6 B;  4PVH A;  4JAY A;  3RJ8 A;  2R2Z A;  3HSU A;  3S1C A;  3NVY B;  4MLA A;  5G5H B;  3I99 A;  5L6G A;  2VFS A;  1T3Q C;  1W1S A;  1UXY A;  2R8D A;  1E8F A;  1WYG A;  1N62 C;  2YVS A;  3AM9 A;  1MBT A;  1W1Q A;  1HSK A;  3KJM A;  2QPM A;  1AHV A;  3HRD C;  5AE1 A;  2UUU A;  5I1W A;  2W3S A;  3B9J B;  2BVG A;  4BCA A;  3NVZ B;  1E8H A;  1W1R A;  4PVK A;  2Q85 A;  3JS8 A;  2OAI A;  4PWC A;  4BC7 A;  4JB1 A;  1WVF A;  2IPI A;  3W8X A;  1RM6 B;  4DNS A;  4OAL A;  5K8E A;  5D79 A;  2P4P A;  2GQT A;  3NVW B;  3D2J A;  1E0Y A;  2W55 A;  4PWB A;  3S1D A;  3TX1 A;  3NRZ B;  3W8W A;  1AHZ A;  3AMZ A;  1AHU A;  1N63 C;  5G5G B;  2W54 A;  3C0P A;  5HHZ A;  3NVV B;  1W1J A;  3EUB 3;  1VAO A;  2P3H A;  2QKN A;  3FW9 A;  2Y3S A;  3LLB A;  2GQU A;  3POP A;  1QLU A;  2MBR A;  5ADZ A;  5AE2 A;  2Y08 A;  1F0X A;  4PVE A;  1DIQ A;  3D2D A;  2PLS A;  1W1O A;  5HQX A;  1N61 C;  4PYT A;  1MBB A;  2PLI A;  1SB3 B;  3FW8 A;  5FXF A;  1FO4 A;  2Q4W A;  4BBY A;  1N60 C;  3AN1 A;  2E3T A;  2P13 A;  3FWA A;  4PVJ A;  2WDW A;  3TSJ A;  3GSY A;  1FIQ B;  3TSH A;  4HG0 A;  2Y3R A;  4EC3 A;  1I19 A;  1W1L A;  1W1M A;  3LAE A;  2AXR A;  3RJA A;  5AE3 A;  1V97 A;  1VDV A;  2VFV A;  2RK5 A;  3VTE A;  3FW7 A;  5I1V A;  1N5W C;  4BC9 A;  4O95 A;  3DQ0 A;  4UD8 A;  2O3G A;  5FXE A;  3W8Z A;  1JRP A;  5HMR A;  2EXR A;  5FXP A;  2BVF A;  2W3R A;  1FFU C;  2Y4G A;  2VFT A;  4XLO A;  3S1F A;  1WVE A;  3BW7 A;  1W1K A;  3ETR B;  2VAO A;  2VFU A;  3DED A;  1E8G A;  3NS1 B;  3PM9 A;  5FXD A;  4PZF A;  2BVH A;  1N5X A;  2UUV A;  5L6F A;  1DZN A;  1DII A;  2I0K A;  3S1E A;  1FFV C;  4ML8 A;  1JRO A;  1ZR6 A;  3D2H A;  2VFR A;  1ZXI C; 
#chains in the Genus database with same CATH homology
 2NQW A;  1QLT A;  3PQB A;  4ZOH B;  5AWV A;  3SR6 B;  4PVH A;  4JAY A;  3RJ8 A;  2R2Z A;  3HSU A;  3S1C A;  3NVY B;  4MLA A;  5G5H B;  3I99 A;  5L6G A;  2VFS A;  1T3Q C;  1W1S A;  1UXY A;  2R8D A;  1E8F A;  1WYG A;  1N62 C;  2YVS A;  3AM9 A;  1MBT A;  1W1Q A;  1HSK A;  3KJM A;  2QPM A;  1AHV A;  3HRD C;  5AE1 A;  2UUU A;  5I1W A;  2W3S A;  3B9J B;  2BVG A;  4BCA A;  3NVZ B;  1E8H A;  1W1R A;  4PVK A;  2Q85 A;  3JS8 A;  2OAI A;  4PWC A;  4BC7 A;  4JB1 A;  1WVF A;  2IPI A;  3W8X A;  1RM6 B;  4DNS A;  4OAL A;  5K8E A;  5D79 A;  2P4P A;  2GQT A;  3NVW B;  3D2J A;  1E0Y A;  2W55 A;  4PWB A;  3S1D A;  3TX1 A;  3NRZ B;  3W8W A;  1AHZ A;  3AMZ A;  1AHU A;  1N63 C;  5G5G B;  2W54 A;  3C0P A;  5HHZ A;  3NVV B;  1W1J A;  3EUB 3;  1VAO A;  2P3H A;  2QKN A;  3FW9 A;  2Y3S A;  3LLB A;  2GQU A;  3POP A;  1QLU A;  2MBR A;  5ADZ A;  5AE2 A;  2Y08 A;  1F0X A;  4PVE A;  1DIQ A;  3D2D A;  2PLS A;  1W1O A;  5HQX A;  1N61 C;  4PYT A;  1MBB A;  2PLI A;  1SB3 B;  3FW8 A;  5FXF A;  1FO4 A;  2Q4W A;  4BBY A;  1N60 C;  3AN1 A;  2E3T A;  2P13 A;  3FWA A;  4PVJ A;  2WDW A;  3TSJ A;  3GSY A;  1FIQ B;  3TSH A;  4HG0 A;  2Y3R A;  4EC3 A;  1I19 A;  1W1L A;  1W1M A;  3LAE A;  2AXR A;  3RJA A;  5AE3 A;  1V97 A;  1VDV A;  2VFV A;  2RK5 A;  3VTE A;  3FW7 A;  5I1V A;  1N5W C;  4BC9 A;  4O95 A;  3DQ0 A;  4UD8 A;  2O3G A;  5FXE A;  3W8Z A;  1JRP A;  5HMR A;  2EXR A;  5FXP A;  2BVF A;  2W3R A;  1FFU C;  2Y4G A;  2VFT A;  4XLO A;  3S1F A;  1WVE A;  3BW7 A;  1W1K A;  3ETR B;  2VAO A;  2VFU A;  3DED A;  1E8G A;  3NS1 B;  3PM9 A;  5FXD A;  4PZF A;  2BVH A;  1N5X A;  2UUV A;  5L6F A;  1DZN A;  1DII A;  2I0K A;  3S1E A;  1FFV C;  4ML8 A;  1JRO A;  1ZR6 A;  3D2H A;  2VFR A;  1ZXI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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