3PQBA

The crystal structure of pregilvocarcin in complex with gilr, an oxidoreductase that catalyzes the terminal step of gilvocarcin biosynthesis
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
492
structure length
492
Chain Sequence
PFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNAALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGELFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGGVMSWLTGTRYMSQADCGDVMGARSASKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRDSVVKSSWFSAWQDAELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSIGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Putative oxidoreductase
publication title The Crystal Structure and Mechanism of an Unusual Oxidoreductase, GilR, Involved in Gilvocarcin V Biosynthesis.
pubmed doi rcsb
source organism Streptomyces griseoflavus
total genus 165
structure length 492
sequence length 492
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3pqbA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3pqbA02
3RJAA 5I1VA 2Y3SA 2BVGA 3RJ8A 3D2HA 4PWBA 3TSJA 2WDWA 4PVKA 5L6FA 3TSHA 3W8ZA 2IPIA 3W8WA 3D2JA 2Y4GA 5K8EA 4PVHA 3W8XA 4EC3A 5AWVA 2Y08A 4UD8A 2AXRA 4PVJA 5I1WA 3POPA 3D2DA 3FW8A 4DNSA 2UUVA 4PZFA 2Y3RA 3FWAA 5D79A 3HSUA 4XLOA 2BVHA 3VTEA 3FW9A 5L6GA 1ZR6A 4PWCA 2UUUA 3GSYA 4PVEA 3FW7A 3PQBA 2BVFA
chains in the Genus database with same CATH superfamily
1RM6B 1DIQA 3RJAA 2I0KA 5I1VA 2BVGA 1DZNA 3B9JB 2WDWA 3HRDC 5G5HB 3TSHA 1W1QA 1MBTA 3D2JA 5HQXA 2P3HA 3TX1A 1W1RA 3ETRB 5AWVA 1MBBA 4UD8A 1WVEA 2AXRA 2O3GA 3D2DA 3KJMA 3NVVB 2W3SA 2VFRA 2UUVA 5HHZA 2W54A 3BW7A 1DIIA 3HSUA 4ML8A 5AE3A 3C0PA 5L6GA 1QLUA 2E3TA 2VFVA 3DQ0A 2NQWA 3GSYA 1W1JA 2EXRA 2Y3SA 4O95A 1W1LA 5ADZA 3S1DA 1W1SA 3W8WA 2IPIA 3I99A 5K8EA 1F0XA 1FIQB 1JRPA 3AMZA 1VAOA 3JS8A 4BCAA 4EC3A 4MLAA 2PLSA 1E8FA 5FXPA 2VFSA 1QLTA 1I19A 3POPA 3AN1A 2YVSA 3NVZB 4DNSA 1AHUA 3SR6B 3DEDA 1VDVA 2QPMA 4XLOA 2BVHA 1WYGA 3EUB3 5AE2A 1V97A 1ZR6A 2RK5A 4BBYA 1FFVC 2W55A 1FFUC 3D2HA 3RJ8A 3TSJA 2R2ZA 5FXEA 5L6FA 3W8ZA 4OALA 5HMRA 3NVWB 1HSKA 3NVYB 1W1OA 4PVHA 3PM9A 3W8XA 3NRZB 5G5GB 1T3QC 3S1FA 1UXYA 1E8HA 2Q4WA 2Y08A 1FO4A 2QKNA 1W1KA 1JROA 3NS1B 1E8GA 1N60C 2Y3RA 5D79A 1N5WC 2VFUA 2Q85A 5FXDA 4PWCA 2P13A 5FXFA 4PVEA 1SB3B 2BVFA 3PQBA 3LLBA 4BC7A 4PWBA 1AHZA 2R8DA 4PVKA 2Y4GA 1WVFA 3S1CA 3LAEA 2OAIA 4PYTA 4JB1A 1ZXIC 2MBRA 2W3RA 2VAOA 1N61C 1W1MA 4JAYA 1N5XA 5AE1A 2VFTA 1N62C 4PVJA 4BC9A 5I1WA 3AM9A 4HG0A 3FW8A 4ZOHB 1E0YA 2PLIA 4PZFA 3FWAA 3S1EA 1AHVA 3VTEA 2P4PA 2UUUA 2GQUA 1N63C 3FW7A 3FW9A 2GQTA
chains in the Genus database with same CATH topology
1RM6B 1DIQA 3RJAA 2I0KA 5I1VA 2BVGA 1DZNA 3B9JB 2WDWA 3HRDC 5G5HB 3TSHA 1W1QA 1MBTA 3D2JA 5HQXA 2P3HA 3TX1A 1W1RA 3ETRB 5AWVA 1MBBA 4UD8A 1WVEA 2AXRA 2O3GA 3D2DA 3KJMA 3NVVB 2W3SA 2VFRA 2UUVA 5HHZA 2W54A 3BW7A 1DIIA 3HSUA 4ML8A 5AE3A 3C0PA 5L6GA 1QLUA 2E3TA 2VFVA 3DQ0A 2NQWA 3GSYA 1W1JA 2EXRA 2Y3SA 4O95A 1W1LA 5ADZA 3S1DA 1W1SA 3W8WA 2IPIA 3I99A 5K8EA 1F0XA 1FIQB 1JRPA 3AMZA 1VAOA 3JS8A 4BCAA 4EC3A 4MLAA 2PLSA 1E8FA 5FXPA 2VFSA 1QLTA 1I19A 3POPA 3AN1A 2YVSA 3NVZB 4DNSA 1AHUA 3SR6B 3DEDA 1VDVA 2QPMA 4XLOA 2BVHA 1WYGA 3EUB3 5AE2A 1V97A 1ZR6A 2RK5A 4BBYA 1FFVC 2W55A 1FFUC 3D2HA 3RJ8A 3TSJA 2R2ZA 5FXEA 5L6FA 3W8ZA 4OALA 5HMRA 3NVWB 1HSKA 3NVYB 1W1OA 4PVHA 3PM9A 3W8XA 3NRZB 5G5GB 1T3QC 3S1FA 1UXYA 1E8HA 2Q4WA 2Y08A 1FO4A 2QKNA 1W1KA 1JROA 3NS1B 1E8GA 1N60C 2Y3RA 5D79A 1N5WC 2VFUA 2Q85A 5FXDA 4PWCA 2P13A 5FXFA 4PVEA 1SB3B 2BVFA 3PQBA 3LLBA 4BC7A 4PWBA 1AHZA 2R8DA 4PVKA 2Y4GA 1WVFA 3S1CA 3LAEA 2OAIA 4PYTA 4JB1A 1ZXIC 2MBRA 2W3RA 2VAOA 1N61C 1W1MA 4JAYA 1N5XA 5AE1A 2VFTA 1N62C 4PVJA 4BC9A 5I1WA 3AM9A 4HG0A 3FW8A 4ZOHB 1E0YA 2PLIA 4PZFA 3FWAA 3S1EA 1AHVA 3VTEA 2P4PA 2UUUA 2GQUA 1N63C 3FW7A 3FW9A 2GQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJA A;  5I1V A;  2Y3S A;  2BVG A;  3RJ8 A;  3D2H A;  4PWB A;  3TSJ A;  2WDW A;  4PVK A;  5L6F A;  3TSH A;  3W8Z A;  2IPI A;  3W8W A;  3D2J A;  2Y4G A;  5K8E A;  4PVH A;  3W8X A;  4EC3 A;  5AWV A;  2Y08 A;  4UD8 A;  2AXR A;  4PVJ A;  5I1W A;  3POP A;  3D2D A;  3FW8 A;  4DNS A;  2UUV A;  4PZF A;  2Y3R A;  3FWA A;  5D79 A;  3HSU A;  4XLO A;  2BVH A;  3VTE A;  3FW9 A;  5L6G A;  1ZR6 A;  4PWC A;  2UUU A;  3GSY A;  4PVE A;  3FW7 A;  3PQB A;  2BVF A; 
#chains in the Genus database with same CATH topology
 1RM6 B;  1DIQ A;  3RJA A;  2I0K A;  5I1V A;  2BVG A;  1DZN A;  3B9J B;  2WDW A;  3HRD C;  5G5H B;  3TSH A;  1W1Q A;  1MBT A;  3D2J A;  5HQX A;  2P3H A;  3TX1 A;  1W1R A;  3ETR B;  5AWV A;  1MBB A;  4UD8 A;  1WVE A;  2AXR A;  2O3G A;  3D2D A;  3KJM A;  3NVV B;  2W3S A;  2VFR A;  2UUV A;  5HHZ A;  2W54 A;  3BW7 A;  1DII A;  3HSU A;  4ML8 A;  5AE3 A;  3C0P A;  5L6G A;  1QLU A;  2E3T A;  2VFV A;  3DQ0 A;  2NQW A;  3GSY A;  1W1J A;  2EXR A;  2Y3S A;  4O95 A;  1W1L A;  5ADZ A;  3S1D A;  1W1S A;  3W8W A;  2IPI A;  3I99 A;  5K8E A;  1F0X A;  1FIQ B;  1JRP A;  3AMZ A;  1VAO A;  3JS8 A;  4BCA A;  4EC3 A;  4MLA A;  2PLS A;  1E8F A;  5FXP A;  2VFS A;  1QLT A;  1I19 A;  3POP A;  3AN1 A;  2YVS A;  3NVZ B;  4DNS A;  1AHU A;  3SR6 B;  3DED A;  1VDV A;  2QPM A;  4XLO A;  2BVH A;  1WYG A;  3EUB 3;  5AE2 A;  1V97 A;  1ZR6 A;  2RK5 A;  4BBY A;  1FFV C;  2W55 A;  1FFU C;  3D2H A;  3RJ8 A;  3TSJ A;  2R2Z A;  5FXE A;  5L6F A;  3W8Z A;  4OAL A;  5HMR A;  3NVW B;  1HSK A;  3NVY B;  1W1O A;  4PVH A;  3PM9 A;  3W8X A;  3NRZ B;  5G5G B;  1T3Q C;  3S1F A;  1UXY A;  1E8H A;  2Q4W A;  2Y08 A;  1FO4 A;  2QKN A;  1W1K A;  1JRO A;  3NS1 B;  1E8G A;  1N60 C;  2Y3R A;  5D79 A;  1N5W C;  2VFU A;  2Q85 A;  5FXD A;  4PWC A;  2P13 A;  5FXF A;  4PVE A;  1SB3 B;  2BVF A;  3PQB A;  3LLB A;  4BC7 A;  4PWB A;  1AHZ A;  2R8D A;  4PVK A;  2Y4G A;  1WVF A;  3S1C A;  3LAE A;  2OAI A;  4PYT A;  4JB1 A;  1ZXI C;  2MBR A;  2W3R A;  2VAO A;  1N61 C;  1W1M A;  4JAY A;  1N5X A;  5AE1 A;  2VFT A;  1N62 C;  4PVJ A;  4BC9 A;  5I1W A;  3AM9 A;  4HG0 A;  3FW8 A;  4ZOH B;  1E0Y A;  2PLI A;  4PZF A;  3FWA A;  3S1E A;  1AHV A;  3VTE A;  2P4P A;  2UUU A;  2GQU A;  1N63 C;  3FW7 A;  3FW9 A;  2GQT A; 
#chains in the Genus database with same CATH homology
 1RM6 B;  1DIQ A;  3RJA A;  2I0K A;  5I1V A;  2BVG A;  1DZN A;  3B9J B;  2WDW A;  3HRD C;  5G5H B;  3TSH A;  1W1Q A;  1MBT A;  3D2J A;  5HQX A;  2P3H A;  3TX1 A;  1W1R A;  3ETR B;  5AWV A;  1MBB A;  4UD8 A;  1WVE A;  2AXR A;  2O3G A;  3D2D A;  3KJM A;  3NVV B;  2W3S A;  2VFR A;  2UUV A;  5HHZ A;  2W54 A;  3BW7 A;  1DII A;  3HSU A;  4ML8 A;  5AE3 A;  3C0P A;  5L6G A;  1QLU A;  2E3T A;  2VFV A;  3DQ0 A;  2NQW A;  3GSY A;  1W1J A;  2EXR A;  2Y3S A;  4O95 A;  1W1L A;  5ADZ A;  3S1D A;  1W1S A;  3W8W A;  2IPI A;  3I99 A;  5K8E A;  1F0X A;  1FIQ B;  1JRP A;  3AMZ A;  1VAO A;  3JS8 A;  4BCA A;  4EC3 A;  4MLA A;  2PLS A;  1E8F A;  5FXP A;  2VFS A;  1QLT A;  1I19 A;  3POP A;  3AN1 A;  2YVS A;  3NVZ B;  4DNS A;  1AHU A;  3SR6 B;  3DED A;  1VDV A;  2QPM A;  4XLO A;  2BVH A;  1WYG A;  3EUB 3;  5AE2 A;  1V97 A;  1ZR6 A;  2RK5 A;  4BBY A;  1FFV C;  2W55 A;  1FFU C;  3D2H A;  3RJ8 A;  3TSJ A;  2R2Z A;  5FXE A;  5L6F A;  3W8Z A;  4OAL A;  5HMR A;  3NVW B;  1HSK A;  3NVY B;  1W1O A;  4PVH A;  3PM9 A;  3W8X A;  3NRZ B;  5G5G B;  1T3Q C;  3S1F A;  1UXY A;  1E8H A;  2Q4W A;  2Y08 A;  1FO4 A;  2QKN A;  1W1K A;  1JRO A;  3NS1 B;  1E8G A;  1N60 C;  2Y3R A;  5D79 A;  1N5W C;  2VFU A;  2Q85 A;  5FXD A;  4PWC A;  2P13 A;  5FXF A;  4PVE A;  1SB3 B;  2BVF A;  3PQB A;  3LLB A;  4BC7 A;  4PWB A;  1AHZ A;  2R8D A;  4PVK A;  2Y4G A;  1WVF A;  3S1C A;  3LAE A;  2OAI A;  4PYT A;  4JB1 A;  1ZXI C;  2MBR A;  2W3R A;  2VAO A;  1N61 C;  1W1M A;  4JAY A;  1N5X A;  5AE1 A;  2VFT A;  1N62 C;  4PVJ A;  4BC9 A;  5I1W A;  3AM9 A;  4HG0 A;  3FW8 A;  4ZOH B;  1E0Y A;  2PLI A;  4PZF A;  3FWA A;  3S1E A;  1AHV A;  3VTE A;  2P4P A;  2UUU A;  2GQU A;  1N63 C;  3FW7 A;  3FW9 A;  2GQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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