3PRUA

Crystal structure of phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (fragment 14-158) from synechocystis sp. pcc 6803, northeast structural genomics consortium target sgr182a
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
142
structure length
142
Chain Sequence
YNESRPVELRPDFSLDDAKMVIRAVYRQVLGNDYIMDSERLKGAESLLTNGSISVREFVRTVAKSELYKKKFLYNNFQTRVIELNYKHLLGRAPFSEDEVIFHLDLYENQGFDADIDSYIDSVEYQENFGENIVPYYRFNNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Northeast Structural Genomics Consortium Target SgR182A
rcsb
molecule tags Photosynthesis
source organism Synechocystis sp.
molecule keywords Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-assoc
total genus 42
structure length 142
sequence length 142
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 3pruA01
2L8VA 2L3WA 3OHWA 2KY4A 3OSJA 2L06A 3PRUA 3NPHB
chains in the Genus database with same CATH superfamily
3OHWA 3Q1XA 1S80A 4HZCA 1SSQA 1SSMA 1T3DA 4N69A 4H7OA 4N6AA 3NPHB 2L8VA 1SSTA 4N6BA 2L06A 3F1XA 2L3WA 3GVDA 3MC4A 3PRUA 3P1BA 2KY4A 3OSJA 3P47A 4HZDA
chains in the Genus database with same CATH topology
3OHWA 3Q1XA 1S80A 4HZCA 1SSQA 1SSMA 1T3DA 4N69A 4H7OA 4N6AA 3NPHB 2L8VA 1SSTA 4N6BA 2L06A 3F1XA 2L3WA 3GVDA 3MC4A 3PRUA 3P1BA 2KY4A 3OSJA 3P47A 4HZDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L8V A;  2L3W A;  3OHW A;  2KY4 A;  3OSJ A;  2L06 A;  3PRU A;  3NPH B; 
#chains in the Genus database with same CATH topology
 3OHW A;  3Q1X A;  1S80 A;  4HZC A;  1SSQ A;  1SSM A;  1T3D A;  4N69 A;  4H7O A;  4N6A A;  3NPH B;  2L8V A;  1SST A;  4N6B A;  2L06 A;  3F1X A;  2L3W A;  3GVD A;  3MC4 A;  3PRU A;  3P1B A;  2KY4 A;  3OSJ A;  3P47 A;  4HZD A; 
#chains in the Genus database with same CATH homology
 3OHW A;  3Q1X A;  1S80 A;  4HZC A;  1SSQ A;  1SSM A;  1T3D A;  4N69 A;  4H7O A;  4N6A A;  3NPH B;  2L8V A;  1SST A;  4N6B A;  2L06 A;  3F1X A;  2L3W A;  3GVD A;  3MC4 A;  3PRU A;  3P1B A;  2KY4 A;  3OSJ A;  3P47 A;  4HZD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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