3PS2A

Crystal structure of the escherichia coli lpxc/lpc-012 complex
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
source organism Escherichia coli ihe3034
molecule tags Hydrolase/antibiotic
total genus 80
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps2A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps2A02
2JT2A 4FW5A 2J65A 3P76A 4J3DA 3P3CA 4LCHA 2IERA 4FW3A 4U3BA 4OKGA 2O3ZA 2GO3A 5DRPA 4LCGA 4FW4A 4MDTA 3PS1A 2VESA 1P42A 3U1YA 1YHCA 4IS9A 4U3DA 5DROA 3P3GA 1XXEA 2IESA 5DRRA 3PS3A 5DRQA 3UHMA 3P3EA 2GO4A 4FW6A 1YH8A 4OZEA 3NZKA 4MQYA 4FW7A 4LCFA 4ISAA 3PS2A
chains in the Genus database with same CATH superfamily
1RHYA 4OO1D 4J3DA 5C0XB 2VQFE 2JEBA 3ZZ0A 4DR3I 5IWAE 2UXBE 4X64E 4NBQA 3Q6MA 1NHHA 2NN6C 1U2RA 3CWVA 4NXNI 3JAMQ 1N36E 4YHHE 3QT6A 4DV1I 4LFAI 4DV7E 2A2DA 3M6AA 3UHMA 4DR5I 4DXLA 4JG4A 3T1YI 4FWDA 4HY1A 1BKNA 4DU8A 4PRXA 1Y6ZA 2VQEI 2UUCI 4JI7E 4JI2I 2Z5BA 4U3BA 2ZBKB 1D6TA 4JI1E 1OJ4A 1FKAE 1FNMA 3OTOI 2V2ZA 1KVKA 2VESA 3GONA 4UT4A 4IFDC 2HK2A 1NHIA 4LF5I 1YHCA 2PO2B 2V34A 2BR2B 4JI6I 2BM1A 2V2VA 3PYDA 4IFDD 4DV3E 4OZEA 2PNZB 5JEAA 1HNWI 2HHHE 4ISAA 1IBKE 4LFCI 3QT7A 5JEAF 1K47A 1Z5AA 5C0XE 1H7SA 4P52A 2E5LE 3HJCA 3PYGA 5A2QQ 5JEAD 2IOPA 4B3RE 1WUUA 3J81C 3LNUA 3PS1A 1ZM4A 4JI8I 1N32I 1E3HA 1IBLE 4IS9A 5DROA 1J5EI 4LF6E 4AIDA 4DUYI 5DRQA 5IT9Q 2GO4A 4R1FA 3CDJA 4JI5I 2AJ4A 4DR1E 3T1HI 3ZKBA 1OYPA 3J80Q 4LCHA 2CZ9A 2Q2EB 4GQUA 2VF3A 5K36F 1PVGA 4NXME 4ZVIA 4DR7E 2O1TA 2PO0B 5K36D 4B3MI 5L3JA 1H74A 1NZ0A 4BA2A 2IESA 2LJPA 2UUCE 4JI2E 2V2QA 3P06A 4PU9A 2OI2A 2WNRA 4FW7A 3V2UC 3WU6A 3QT5A 4MYTA 2F1DA 1HNXE 2XEXA 4DV4E 1KTVA 3P3CA 1RR9A 1XMQE 4OO1B 2UXCI 4DV5E 4JI6E 2X7IA 3J80C 1ZXNA 4JV5I 1QZRA 4RPFA 4DUZE 2UUAE 2C39A 3B8HA 3B4TA 4P7AA 1VI7A 1EA6A 4IZKB 4OO1C 2BM0A 4LOMA 4X62E 4LFBI 3WU5A 1N34E 2F4VE 4DPTA 2JEAA 4B3TI 4BA1B 4FWGA 1IBME 3CDIA 1Z5BA 3DD6A 4QNJA 4IZJA 4DR4E 4MU0A 4MDTA 4B3SE 1HNZE 4JI4E 2UU9E 1XHKA 2UXDI 3WU4A 4U3DA 1R6MA 4IZJD 3T1HE 4X66I 4LF9I 1XNQI 4DV2I 4JI3I 4IFDB 4MYUA 4JI0I 3K1JA 3J81Q 2C38A 2J65A 4FW5A 5DNXA 1I94E 5LMNI 4OO1E 3GCMA 4OKGA 4LF8I 1USVA 5DRPA 2ZM6I 5JEAB 4YY3I 1HR0I 1UDQA 3GMEA 4AQYI 2GQ0A 3P3GA 5C0XA 5DRRA 1MG7A 1Z0CA 4FW6A 2A2CA 4DPXA 1YH8A 5DNLA 3NZKA 5C0XF 4USMA 2NN6E 5JEAC 3PS2A 3M7ND 4KHPE 5LMUE 3H1CA 5LL6R 4K0KI 2CGEA 4DV0E 4GKKI 4MU1A 2GO3A 4M1KA 2HFSA 1N33I 4ED4A 1Z5CA 1MX0A 4EMDA 2C37B 4HXZA 4DPYA 5K36B 3WU3A 4JYAI 4DPWA 1RREA 2UUBI 4X65I 4HACA 4IFDE 4MQYA 3PYEA 4DR3E 1ZM3A 2PO2A 4LF4I 1FI4A 1N0UA 5K36C 4LF9E 1UDNA 1S16A 1Z0BA 3L7ZB 4NXNE 3Q1QA 3J7AG 4DV1E 4DU7A 4QNKA 4LFAE 4DR6I 1P42A 1Z0EA 1R6LA 4DR5E 3T1YE 2VQFI 4JI0E 5IWAI 1B63A 4KQVA 4X64I 2VQEE 2Z5CA 3B78A 1EI1A 4LCFA 2ZM6E 2PO1B 1Y60A 3OTOE 2WP8B 1N36I 4YHHI 4WUDA 3PRYA 1B62A 2DEIA 3P76A 4AQYE 4LF5E 2O1UA 2JE6B 2O1VA 3LTOA 3U1YA 5K36E 1HNWE 1KIJA 2DEJA 4JI1I 4LFCE 1XXEA 4GKJI 1Y5YA 3PS3A 5BR8I 2JEBB 4IZJB 4GKKE 3D4JA 1H72C 3U1KA 2PO0A 4JI8E 1N32E 1N0VC 1ZXMA 4DV3I 4JYAE 1J5EE 4X65E 4MU3A 4DUYE 2NPFA 3M7NG 1Y4SA 2C38B 2HFUA 1KKHA 4JI5E 2BA0G 5FWKA 4B3RI 4LF7I 4OO1A 2Z5BB 4LF4E 3LPSA 4OX9I 4AM3A 1UDSA 3QT8A 1ELOA 2V8PA 1MU5A 4DR6E 2BV3A 4LF6I 4WUBA 2GS8A 2JT2A 4FW9A 2WW4A 1H73A 4B3ME 2IERA 4HYMA 5EKWA 4IZKA 1Z0TA 1DARA 2AE8A 1HK7A 1NHJA 2J7KA 5GMEA 4DR1I 2R42A 2NN6A 4BA1A 1XMOI 3V5RA 4DV6I 4NXMI 2NN6F 4N3OA 5C0XC 4DR7I 1Z0VA 3Q6NA 4XTJA 4URLA 1S4EA 3ZZTA 2NN6D 4FN5A 2UXCE 1A6FA 4Z7CA 3K17A 2PNLA 5GMDA 4MU4A 1Z0WA 5C0XD 4JV5E 2E1RA 2CVEA 4AIMA 2HKEA 4HACB 4GKJE 3B82A 2BA0D 5BR8E 1HNXI 4IFDA 3PYFA 4DV4I 1FJGI 4LFBE 1XMQI 4IFDF 4I3HA 4DV5I 1USUA 4B3TE 4UTGA 3JAMC 4DUZI 3HKMA 2UUAI 1OYRA 1UDOA 2O1WA 1Z59A 1Z0GA 4FW3A 4X62I 2BR2A 4BA2B 2PNMA 2UXDE 3KRNA 1H7UA 2O3ZA 1N34I 4LF7E 2F4VI 4LPFA 2Z5CB 2PNZA 4X66E 1XNQE 4FW4A 5JEAE 1OYSA 4DV2E 4DR2I 2WNRB 4JI3E 4OX9E 1E3PA 1XNRI 2EFGA 1IBMI 2Z5EA 5FLXQ 3H4LA 4DR4I 3F0NA 1UEKA 4B3SI 1HNZI 4JI4I 2BA1G 3M85G 5LMNE 2UXBI 2UU9I 4LF8E 2C37A 1ZM9A 4FWHA 5K36A 4YY3E 1HR0E 5ELWA 2C39B 4DV7I 4PRVA 2HK3A 3GLLA 1XMOE 4DV6E 1FWLA 1PKPA 4LCGA 1ZM2A 5A2QC 1I94I 5EL9A 2JEAB 4JI7I 1FWKA 3HULA 4USKA 3L7ZA 4K0KE 2X36A 5FLXC 1VISA 5IT9C 1N33E 1FJGE 4WUCA 4DPUA 2R3VA 1Y4UA 2HHHI 2UUBE 1PIEA 3K85A 2PO1A 1IBKI 4KHPI 3ZM7A 2WP8A 2BA1D 3M85D 5LMUI 3ZKDA 4DV0I 2E5LI 2IOQA 2JE6A 3P3EA 2HKJA 4Z7YA 2CG9A 4OO1F 3ZZUA 2ZITA 1IBLI 4DR2E 2NN6B 3J7AM 1XNRE
chains in the Genus database with same CATH topology
2JT2A 4FW5A 2J65A 3P76A 4J3DA 3P3CA 4LCHA 2IERA 4FW3A 4U3BA 4OKGA 2O3ZA 2GO3A 5DRPA 4LCGA 4FW4A 4MDTA 3PS1A 2VESA 1P42A 3U1YA 1YHCA 4IS9A 4U3DA 5DROA 3P3GA 1XXEA 2IESA 5DRRA 3PS3A 5DRQA 3UHMA 3P3EA 2GO4A 4FW6A 1YH8A 4OZEA 3NZKA 4MQYA 4FW7A 4LCFA 4ISAA 3PS2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JT2 A;  4FW5 A;  2J65 A;  3P76 A;  4J3D A;  3P3C A;  4LCH A;  2IER A;  4FW3 A;  4U3B A;  4OKG A;  2O3Z A;  2GO3 A;  5DRP A;  4LCG A;  4FW4 A;  4MDT A;  3PS1 A;  2VES A;  1P42 A;  3U1Y A;  1YHC A;  4IS9 A;  4U3D A;  5DRO A;  3P3G A;  1XXE A;  2IES A;  5DRR A;  3PS3 A;  5DRQ A;  3UHM A;  3P3E A;  2GO4 A;  4FW6 A;  1YH8 A;  4OZE A;  3NZK A;  4MQY A;  4FW7 A;  4LCF A;  4ISA A;  3PS2 A; 
#chains in the Genus database with same CATH topology
 1RHY A;  4OO1 D;  4J3D A;  5C0X B;  2VQF E;  2JEB A;  3ZZ0 A;  4DR3 I;  5IWA E;  2UXB E;  4X64 E;  4NBQ A;  3Q6M A;  1NHH A;  2NN6 C;  1U2R A;  3CWV A;  4NXN I;  3JAM Q;  1N36 E;  4YHH E;  3QT6 A;  4DV1 I;  4LFA I;  4DV7 E;  2A2D A;  3M6A A;  3UHM A;  4DR5 I;  4DXL A;  4JG4 A;  3T1Y I;  4FWD A;  4HY1 A;  1BKN A;  4DU8 A;  4PRX A;  1Y6Z A;  2VQE I;  2UUC I;  4JI7 E;  4JI2 I;  2Z5B A;  4U3B A;  2ZBK B;  1D6T A;  4JI1 E;  1OJ4 A;  1FKA E;  1FNM A;  3OTO I;  2V2Z A;  1KVK A;  2VES A;  3GON A;  4UT4 A;  4IFD C;  2HK2 A;  1NHI A;  4LF5 I;  1YHC A;  2PO2 B;  2V34 A;  2BR2 B;  4JI6 I;  2BM1 A;  2V2V A;  3PYD A;  4IFD D;  4DV3 E;  4OZE A;  2PNZ B;  5JEA A;  1HNW I;  2HHH E;  4ISA A;  1IBK E;  4LFC I;  3QT7 A;  5JEA F;  1K47 A;  1Z5A A;  5C0X E;  1H7S A;  4P52 A;  2E5L E;  3HJC A;  3PYG A;  5A2Q Q;  5JEA D;  2IOP A;  4B3R E;  1WUU A;  3J81 C;  3LNU A;  3PS1 A;  1ZM4 A;  4JI8 I;  1N32 I;  1E3H A;  1IBL E;  4IS9 A;  5DRO A;  1J5E I;  4LF6 E;  4AID A;  4DUY I;  5DRQ A;  5IT9 Q;  2GO4 A;  4R1F A;  3CDJ A;  4JI5 I;  2AJ4 A;  4DR1 E;  3T1H I;  3ZKB A;  1OYP A;  3J80 Q;  4LCH A;  2CZ9 A;  2Q2E B;  4GQU A;  2VF3 A;  5K36 F;  1PVG A;  4NXM E;  4ZVI A;  4DR7 E;  2O1T A;  2PO0 B;  5K36 D;  4B3M I;  5L3J A;  1H74 A;  1NZ0 A;  4BA2 A;  2IES A;  2LJP A;  2UUC E;  4JI2 E;  2V2Q A;  3P06 A;  4PU9 A;  2OI2 A;  2WNR A;  4FW7 A;  3V2U C;  3WU6 A;  3QT5 A;  4MYT A;  2F1D A;  1HNX E;  2XEX A;  4DV4 E;  1KTV A;  3P3C A;  1RR9 A;  1XMQ E;  4OO1 B;  2UXC I;  4DV5 E;  4JI6 E;  2X7I A;  3J80 C;  1ZXN A;  4JV5 I;  1QZR A;  4RPF A;  4DUZ E;  2UUA E;  2C39 A;  3B8H A;  3B4T A;  4P7A A;  1VI7 A;  1EA6 A;  4IZK B;  4OO1 C;  2BM0 A;  4LOM A;  4X62 E;  4LFB I;  3WU5 A;  1N34 E;  2F4V E;  4DPT A;  2JEA A;  4B3T I;  4BA1 B;  4FWG A;  1IBM E;  3CDI A;  1Z5B A;  3DD6 A;  4QNJ A;  4IZJ A;  4DR4 E;  4MU0 A;  4MDT A;  4B3S E;  1HNZ E;  4JI4 E;  2UU9 E;  1XHK A;  2UXD I;  3WU4 A;  4U3D A;  1R6M A;  4IZJ D;  3T1H E;  4X66 I;  4LF9 I;  1XNQ I;  4DV2 I;  4JI3 I;  4IFD B;  4MYU A;  4JI0 I;  3K1J A;  3J81 Q;  2C38 A;  2J65 A;  4FW5 A;  5DNX A;  1I94 E;  5LMN I;  4OO1 E;  3GCM A;  4OKG A;  4LF8 I;  1USV A;  5DRP A;  2ZM6 I;  5JEA B;  4YY3 I;  1HR0 I;  1UDQ A;  3GME A;  4AQY I;  2GQ0 A;  3P3G A;  5C0X A;  5DRR A;  1MG7 A;  1Z0C A;  4FW6 A;  2A2C A;  4DPX A;  1YH8 A;  5DNL A;  3NZK A;  5C0X F;  4USM A;  2NN6 E;  5JEA C;  3PS2 A;  3M7N D;  4KHP E;  5LMU E;  3H1C A;  5LL6 R;  4K0K I;  2CGE A;  4DV0 E;  4GKK I;  4MU1 A;  2GO3 A;  4M1K A;  2HFS A;  1N33 I;  4ED4 A;  1Z5C A;  1MX0 A;  4EMD A;  2C37 B;  4HXZ A;  4DPY A;  5K36 B;  3WU3 A;  4JYA I;  4DPW A;  1RRE A;  2UUB I;  4X65 I;  4HAC A;  4IFD E;  4MQY A;  3PYE A;  4DR3 E;  1ZM3 A;  2PO2 A;  4LF4 I;  1FI4 A;  1N0U A;  5K36 C;  4LF9 E;  1UDN A;  1S16 A;  1Z0B A;  3L7Z B;  4NXN E;  3Q1Q A;  3J7A G;  4DV1 E;  4DU7 A;  4QNK A;  4LFA E;  4DR6 I;  1P42 A;  1Z0E A;  1R6L A;  4DR5 E;  3T1Y E;  2VQF I;  4JI0 E;  5IWA I;  1B63 A;  4KQV A;  4X64 I;  2VQE E;  2Z5C A;  3B78 A;  1EI1 A;  4LCF A;  2ZM6 E;  2PO1 B;  1Y60 A;  3OTO E;  2WP8 B;  1N36 I;  4YHH I;  4WUD A;  3PRY A;  1B62 A;  2DEI A;  3P76 A;  4AQY E;  4LF5 E;  2O1U A;  2JE6 B;  2O1V A;  3LTO A;  3U1Y A;  5K36 E;  1HNW E;  1KIJ A;  2DEJ A;  4JI1 I;  4LFC E;  1XXE A;  4GKJ I;  1Y5Y A;  3PS3 A;  5BR8 I;  2JEB B;  4IZJ B;  4GKK E;  3D4J A;  1H72 C;  3U1K A;  2PO0 A;  4JI8 E;  1N32 E;  1N0V C;  1ZXM A;  4DV3 I;  4JYA E;  1J5E E;  4X65 E;  4MU3 A;  4DUY E;  2NPF A;  3M7N G;  1Y4S A;  2C38 B;  2HFU A;  1KKH A;  4JI5 E;  2BA0 G;  5FWK A;  4B3R I;  4LF7 I;  4OO1 A;  2Z5B B;  4LF4 E;  3LPS A;  4OX9 I;  4AM3 A;  1UDS A;  3QT8 A;  1ELO A;  2V8P A;  1MU5 A;  4DR6 E;  2BV3 A;  4LF6 I;  4WUB A;  2GS8 A;  2JT2 A;  4FW9 A;  2WW4 A;  1H73 A;  4B3M E;  2IER A;  4HYM A;  5EKW A;  4IZK A;  1Z0T A;  1DAR A;  2AE8 A;  1HK7 A;  1NHJ A;  2J7K A;  5GME A;  4DR1 I;  2R42 A;  2NN6 A;  4BA1 A;  1XMO I;  3V5R A;  4DV6 I;  4NXM I;  2NN6 F;  4N3O A;  5C0X C;  4DR7 I;  1Z0V A;  3Q6N A;  4XTJ A;  4URL A;  1S4E A;  3ZZT A;  2NN6 D;  4FN5 A;  2UXC E;  1A6F A;  4Z7C A;  3K17 A;  2PNL A;  5GMD A;  4MU4 A;  1Z0W A;  5C0X D;  4JV5 E;  2E1R A;  2CVE A;  4AIM A;  2HKE A;  4HAC B;  4GKJ E;  3B82 A;  2BA0 D;  5BR8 E;  1HNX I;  4IFD A;  3PYF A;  4DV4 I;  1FJG I;  4LFB E;  1XMQ I;  4IFD F;  4I3H A;  4DV5 I;  1USU A;  4B3T E;  4UTG A;  3JAM C;  4DUZ I;  3HKM A;  2UUA I;  1OYR A;  1UDO A;  2O1W A;  1Z59 A;  1Z0G A;  4FW3 A;  4X62 I;  2BR2 A;  4BA2 B;  2PNM A;  2UXD E;  3KRN A;  1H7U A;  2O3Z A;  1N34 I;  4LF7 E;  2F4V I;  4LPF A;  2Z5C B;  2PNZ A;  4X66 E;  1XNQ E;  4FW4 A;  5JEA E;  1OYS A;  4DV2 E;  4DR2 I;  2WNR B;  4JI3 E;  4OX9 E;  1E3P A;  1XNR I;  2EFG A;  1IBM I;  2Z5E A;  5FLX Q;  3H4L A;  4DR4 I;  3F0N A;  1UEK A;  4B3S I;  1HNZ I;  4JI4 I;  2BA1 G;  3M85 G;  5LMN E;  2UXB I;  2UU9 I;  4LF8 E;  2C37 A;  1ZM9 A;  4FWH A;  5K36 A;  4YY3 E;  1HR0 E;  5ELW A;  2C39 B;  4DV7 I;  4PRV A;  2HK3 A;  3GLL A;  1XMO E;  4DV6 E;  1FWL A;  1PKP A;  4LCG A;  1ZM2 A;  5A2Q C;  1I94 I;  5EL9 A;  2JEA B;  4JI7 I;  1FWK A;  3HUL A;  4USK A;  3L7Z A;  4K0K E;  2X36 A;  5FLX C;  1VIS A;  5IT9 C;  1N33 E;  1FJG E;  4WUC A;  4DPU A;  2R3V A;  1Y4U A;  2HHH I;  2UUB E;  1PIE A;  3K85 A;  2PO1 A;  1IBK I;  4KHP I;  3ZM7 A;  2WP8 A;  2BA1 D;  3M85 D;  5LMU I;  3ZKD A;  4DV0 I;  2E5L I;  2IOQ A;  2JE6 A;  3P3E A;  2HKJ A;  4Z7Y A;  2CG9 A;  4OO1 F;  3ZZU A;  2ZIT A;  1IBL I;  4DR2 E;  2NN6 B;  3J7A M;  1XNR E; 
#chains in the Genus database with same CATH homology
 2JT2 A;  4FW5 A;  2J65 A;  3P76 A;  4J3D A;  3P3C A;  4LCH A;  2IER A;  4FW3 A;  4U3B A;  4OKG A;  2O3Z A;  2GO3 A;  5DRP A;  4LCG A;  4FW4 A;  4MDT A;  3PS1 A;  2VES A;  1P42 A;  3U1Y A;  1YHC A;  4IS9 A;  4U3D A;  5DRO A;  3P3G A;  1XXE A;  2IES A;  5DRR A;  3PS3 A;  5DRQ A;  3UHM A;  3P3E A;  2GO4 A;  4FW6 A;  1YH8 A;  4OZE A;  3NZK A;  4MQY A;  4FW7 A;  4LCF A;  4ISA A;  3PS2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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