3PS3A

Crystal structure of the escherichia coli lpxc/lpc-053 complex
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
source organism Escherichia coli ihe3034
molecule tags Hydrolase/antibiotic
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 82
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps3A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps3A02
4LCGA 4OKGA 1P42A 2VESA 1YHCA 4OZEA 4J3DA 1XXEA 1YH8A 3PS1A 4FW3A 5DRPA 4MQYA 3NZKA 5DROA 3PS2A 4LCFA 4U3DA 3PS3A 4FW4A 5DRRA 4MDTA 4U3BA 2IERA 2GO3A 3P3GA 3P3EA 2J65A 4FW6A 5DRQA 3U1YA 3P3CA 4LCHA 2O3ZA 3UHMA 2IESA 4FW5A 3P76A 4FW7A 2GO4A 2JT2A 4ISAA 4IS9A
chains in the Genus database with same CATH superfamily
2V2VA 4JG4A 3J80C 1HNWI 3M6AA 2Q2EB 3Q6MA 2UXDE 1XXEA 5LMUI 2CG9A 1N33I 1J5EI 4LF6I 4BA1B 2OI2A 4KHPE 4LCFA 3QT7A 5DNLA 1IBLI 2F1DA 4URLA 4P7AA 4DV0E 2Z5CA 2DEIA 1XMOI 1NZ0A 2A2CA 4DR7I 2HKJA 2PO2B 2GO4A 4OO1C 2E5LI 4MU0A 2NPFA 3ZZTA 1ZM4A 5K36E 2EFGA 3NZKA 1J5EE 3L7ZB 3ZZ0A 4GKJE 4OO1B 4DV2I 2JE6B 2WNRB 4LF8I 1Z0BA 5JEAE 1RHYA 2J65A 2NN6B 4KQVA 4JI1I 1N33E 4B3RE 4UT4A 5C0XB 4LCHA 1Y5YA 3LNUA 4JYAI 2IESA 4OX9I 4USKA 2F4VI 5FLXC 1Y60A 2PO2A 2GS8A 3F0NA 1MU5A 3WU3A 1H73A 4DUYE 4IZJD 4LF7E 5IWAE 2UUCI 5K36A 3T1HE 3K85A 1FWKA 1KTVA 2NN6A 4LF4I 1ZXMA 3J81C 5DRQA 1H7SA 4DR2E 1FJGE 1IBKI 4HXZA 3J81Q 4DPUA 2Z5BA 1XNQI 4LFAI 2C38A 3WU6A 2NN6D 2V2ZA 4PU9A 1YHCA 4IZKA 3PYGA 1N32E 5K36C 5DRPA 3CWVA 2PO0B 1FNMA 4FW4A 5DRRA 4DV1E 4OO1E 4MDTA 2NN6E 4IZJB 1XMQI 3P3EA 1RREA 1UDSA 4DPWA 2E1RA 1Z5BA 2O1UA 2WNRA 3P3GA 2UUBE 4LFBI 4DR6E 1IBKE 4HACB 4JI1E 1Z0WA 1EA6A 4JI5I 2PNLA 4LF4E 4DR2I 4XTJA 3CDJA 4DR3E 1HR0I 2VESA 1OYPA 4YY3E 4I3HA 3T1YE 1HNZE 1IBME 1VI7A 1Z0EA 3DD6A 4X64E 3GLLA 2VQFE 4DR4E 2A2DA 2O1WA 1HK7A 4JI6I 3CDIA 4ZVIA 2BA1D 4DR1I 4PRXA 2UXBE 4PRVA 4QNJA 3HJCA 4HACA 2BV3A 4X65I 1XMQE 4B3SE 4ISAA 1OYRA 4OZEA 4JV5I 4KHPI 1NHJA 2LJPA 1I94I 2HHHI 1YH8A 4GKKE 4LF9I 1R6MA 1MG7A 4X66E 1Z5CA 5JEAB 4MU4A 4NXNI 4DPTA 3GONA 4DR3I 4X62I 1PKPA 1NHIA 4FW6A 2GO3A 3PYEA 4AQYE 2X7IA 4DPXA 2Z5EA 4MU3A 2HKEA 1HNZI 3ZM7A 2UU9I 3V2UC 2DEJA 2Z5CB 4N3OA 4DV4I 2ZM6I 4LF5E 2GQ0A 2PO1B 1N36I 5JEAD 3H4LA 2J7KA 4P52A 4GKKI 3GCMA 1A6FA 4X65E 4IFDA 5LMUE 4JV5E 2IOPA 2X36A 4NXMI 4MU1A 2BR2B 4IFDE 4X66I 1PVGA 3P3CA 4DV5E 1XHKA 4B3TI 4DU7A 4JI0E 5C0XE 3LPSA 1B62A 3K1JA 2C37B 4X64I 1ZM2A 4LCGA 1VISA 4IZKB 1BKNA 4DR4I 1USUA 4LOMA 4IFDD 4AM3A 1QZRA 4DV6I 4M1KA 5IWAI 3M7ND 4WUCA 3L7ZA 4BA1A 4U3DA 5JEAA 3QT6A 1U2RA 3P06A 3U1YA 1UEKA 4FN5A 4RPFA 1H72C 4AQYI 4B3TE 4DV3I 2JEBB 4FW7A 4B3ME 4FW9A 5A2QC 3PRYA 3B4TA 4NBQA 1NHHA 4K0KI 4MYTA 2WP8A 4YHHE 2AJ4A 3M7NG 1Z59A 5FWKA 4U3BA 4IFDB 1XNRI 2PNZB 1Z5AA 4AIMA 1N36E 4BA2B 4WUBA 4JI7I 5IT9Q 4ED4A 1OYSA 4YY3I 1MX0A 4IFDC 4LFCI 3T1YI 1Z0TA 3B8HA 4OKGA 1P42A 1HNXI 5BR8E 2R3VA 4K0KE 2BA0G 3Q1QA 4DUYI 2VF3A 4DXLA 1D6TA 1EI1A 4DU8A 5K36F 5C0XA 2UUAI 4YHHI 2BA1G 2C39A 2BR2A 3QT8A 5A2QQ 3J80Q 2HFUA 2HHHE 3OTOE 2XEXA 4DV7I 2Z5BB 2UXCE 1OJ4A 4B3MI 4LF8E 1ZM9A 2WP8B 2ZITA 4FWGA 4B3RI 4LFAE 2IOQA 3M85G 3PS3A 3KRNA 4Z7YA 4JI8E 4DUZE 1HNXE 1S16A 4DV4E 4QNKA 1IBMI 5L3JA 4LF5I 4DR7E 1R6LA 1FWLA 2VQEE 1FI4A 2UU9E 5LMNE 5LL6R 3UHMA 2E5LE 3JAMQ 5IT9C 3B82A 2UUBI 4LFBE 4IS9A 3B78A 2NN6F 4JI3E 4LPFA 4FWDA 4J3DA 3J7AG 4R1FA 3PYDA 4FW3A 4DV2E 4LF6E 4JI7E 3OTOI 4IFDF 5DROA 1I94E 1ZM3A 2HK3A 3V5RA 2JE6A 4JI0I 3PYFA 4IZJA 3Q6NA 4DV5I 4AIDA 3M85D 3J7AM 2UXDI 1Y4UA 1H74A 2PNZA 1KVKA 2CGEA 4OO1D 4FWHA 1XNQE 2R42A 4DR5I 2O1TA 3ZKDA 1KIJA 1XMOE 2O1VA 4OO1F 5LMNI 1ELOA 1N32I 4WUDA 5C0XD 2C38B 5EKWA 4JI6E 1N0UA 3HKMA 1FKAE 2UXBI 2V2QA 2BM1A 1Y6ZA 4DV6E 4EMDA 1N34E 5JEAF 3K17A 1K47A 4GQUA 4OO1A 1N0VC 2PNMA 4JI2I 1Z0GA 4JI5E 3HULA 4JI4I 4NXNE 2C39B 2JEAB 1E3PA 4JYAE 2O3ZA 4NXME 4DV3E 1S4EA 4FW5A 1ZXNA 3D4JA 3JAMC 4OX9E 2ZM6E 4JI3I 1N34I 1KKHA 1Z0VA 3PS2A 4DR1E 4DPYA 1UDOA 3WU4A 2NN6C 4LFCE 4HY1A 4BA2A 1UDNA 2V34A 5C0XC 2CZ9A 5K36D 4UTGA 1PIEA 2HK2A 5BR8I 5GMEA 2HFSA 4LF9E 3H1CA 1FJGI 2C37A 2PO1A 2WW4A 4X62E 2V8PA 1USVA 5FLXQ 4DR5E 4MQYA 5DNXA 4DV1I 2BA0D 5C0XF 2BM0A 4USMA 1WUUA 1DARA 1UDQA 2IERA 4DV7E 2JEAA 2UXCI 5GMDA 4DR6I 4GKJI 3ZKBA 4JI2E 3QT5A 4HYMA 3P76A 3LTOA 2ZBKB 1HNWE 1H7UA 1HR0E 5K36B 5ELWA 3PS1A 3WU5A 4MYUA 1Z0CA 4JI4E 3ZZUA 3GMEA 2VQEI 2VQFI 1B63A 1E3HA 1RR9A 4JI8I 4DUZI 1IBLE 5JEAC 2PO0A 4Z7CA 5EL9A 1Y4SA 4DV0I 2UUCE 3U1KA 2F4VE 3T1HI 2AE8A 2CVEA 4B3SI 2JEBA 2UUAE 1XNRE 4LF7I 2JT2A
chains in the Genus database with same CATH topology
4LCGA 4OKGA 1P42A 2VESA 1YHCA 4OZEA 4J3DA 1XXEA 1YH8A 3PS1A 4FW3A 5DRPA 4MQYA 3NZKA 5DROA 3PS2A 4LCFA 4U3DA 3PS3A 4FW4A 5DRRA 4MDTA 4U3BA 2IERA 2GO3A 3P3GA 3P3EA 2J65A 4FW6A 5DRQA 3U1YA 3P3CA 4LCHA 2O3ZA 3UHMA 2IESA 4FW5A 3P76A 4FW7A 2GO4A 2JT2A 4ISAA 4IS9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LCG A;  4OKG A;  1P42 A;  2VES A;  1YHC A;  4OZE A;  4J3D A;  1XXE A;  1YH8 A;  3PS1 A;  4FW3 A;  5DRP A;  4MQY A;  3NZK A;  5DRO A;  3PS2 A;  4LCF A;  4U3D A;  3PS3 A;  4FW4 A;  5DRR A;  4MDT A;  4U3B A;  2IER A;  2GO3 A;  3P3G A;  3P3E A;  2J65 A;  4FW6 A;  5DRQ A;  3U1Y A;  3P3C A;  4LCH A;  2O3Z A;  3UHM A;  2IES A;  4FW5 A;  3P76 A;  4FW7 A;  2GO4 A;  2JT2 A;  4ISA A;  4IS9 A; 
#chains in the Genus database with same CATH topology
 2V2V A;  4JG4 A;  3J80 C;  1HNW I;  3M6A A;  2Q2E B;  3Q6M A;  2UXD E;  1XXE A;  5LMU I;  2CG9 A;  1N33 I;  1J5E I;  4LF6 I;  4BA1 B;  2OI2 A;  4KHP E;  4LCF A;  3QT7 A;  5DNL A;  1IBL I;  2F1D A;  4URL A;  4P7A A;  4DV0 E;  2Z5C A;  2DEI A;  1XMO I;  1NZ0 A;  2A2C A;  4DR7 I;  2HKJ A;  2PO2 B;  2GO4 A;  4OO1 C;  2E5L I;  4MU0 A;  2NPF A;  3ZZT A;  1ZM4 A;  5K36 E;  2EFG A;  3NZK A;  1J5E E;  3L7Z B;  3ZZ0 A;  4GKJ E;  4OO1 B;  4DV2 I;  2JE6 B;  2WNR B;  4LF8 I;  1Z0B A;  5JEA E;  1RHY A;  2J65 A;  2NN6 B;  4KQV A;  4JI1 I;  1N33 E;  4B3R E;  4UT4 A;  5C0X B;  4LCH A;  1Y5Y A;  3LNU A;  4JYA I;  2IES A;  4OX9 I;  4USK A;  2F4V I;  5FLX C;  1Y60 A;  2PO2 A;  2GS8 A;  3F0N A;  1MU5 A;  3WU3 A;  1H73 A;  4DUY E;  4IZJ D;  4LF7 E;  5IWA E;  2UUC I;  5K36 A;  3T1H E;  3K85 A;  1FWK A;  1KTV A;  2NN6 A;  4LF4 I;  1ZXM A;  3J81 C;  5DRQ A;  1H7S A;  4DR2 E;  1FJG E;  1IBK I;  4HXZ A;  3J81 Q;  4DPU A;  2Z5B A;  1XNQ I;  4LFA I;  2C38 A;  3WU6 A;  2NN6 D;  2V2Z A;  4PU9 A;  1YHC A;  4IZK A;  3PYG A;  1N32 E;  5K36 C;  5DRP A;  3CWV A;  2PO0 B;  1FNM A;  4FW4 A;  5DRR A;  4DV1 E;  4OO1 E;  4MDT A;  2NN6 E;  4IZJ B;  1XMQ I;  3P3E A;  1RRE A;  1UDS A;  4DPW A;  2E1R A;  1Z5B A;  2O1U A;  2WNR A;  3P3G A;  2UUB E;  4LFB I;  4DR6 E;  1IBK E;  4HAC B;  4JI1 E;  1Z0W A;  1EA6 A;  4JI5 I;  2PNL A;  4LF4 E;  4DR2 I;  4XTJ A;  3CDJ A;  4DR3 E;  1HR0 I;  2VES A;  1OYP A;  4YY3 E;  4I3H A;  3T1Y E;  1HNZ E;  1IBM E;  1VI7 A;  1Z0E A;  3DD6 A;  4X64 E;  3GLL A;  2VQF E;  4DR4 E;  2A2D A;  2O1W A;  1HK7 A;  4JI6 I;  3CDI A;  4ZVI A;  2BA1 D;  4DR1 I;  4PRX A;  2UXB E;  4PRV A;  4QNJ A;  3HJC A;  4HAC A;  2BV3 A;  4X65 I;  1XMQ E;  4B3S E;  4ISA A;  1OYR A;  4OZE A;  4JV5 I;  4KHP I;  1NHJ A;  2LJP A;  1I94 I;  2HHH I;  1YH8 A;  4GKK E;  4LF9 I;  1R6M A;  1MG7 A;  4X66 E;  1Z5C A;  5JEA B;  4MU4 A;  4NXN I;  4DPT A;  3GON A;  4DR3 I;  4X62 I;  1PKP A;  1NHI A;  4FW6 A;  2GO3 A;  3PYE A;  4AQY E;  2X7I A;  4DPX A;  2Z5E A;  4MU3 A;  2HKE A;  1HNZ I;  3ZM7 A;  2UU9 I;  3V2U C;  2DEJ A;  2Z5C B;  4N3O A;  4DV4 I;  2ZM6 I;  4LF5 E;  2GQ0 A;  2PO1 B;  1N36 I;  5JEA D;  3H4L A;  2J7K A;  4P52 A;  4GKK I;  3GCM A;  1A6F A;  4X65 E;  4IFD A;  5LMU E;  4JV5 E;  2IOP A;  2X36 A;  4NXM I;  4MU1 A;  2BR2 B;  4IFD E;  4X66 I;  1PVG A;  3P3C A;  4DV5 E;  1XHK A;  4B3T I;  4DU7 A;  4JI0 E;  5C0X E;  3LPS A;  1B62 A;  3K1J A;  2C37 B;  4X64 I;  1ZM2 A;  4LCG A;  1VIS A;  4IZK B;  1BKN A;  4DR4 I;  1USU A;  4LOM A;  4IFD D;  4AM3 A;  1QZR A;  4DV6 I;  4M1K A;  5IWA I;  3M7N D;  4WUC A;  3L7Z A;  4BA1 A;  4U3D A;  5JEA A;  3QT6 A;  1U2R A;  3P06 A;  3U1Y A;  1UEK A;  4FN5 A;  4RPF A;  1H72 C;  4AQY I;  4B3T E;  4DV3 I;  2JEB B;  4FW7 A;  4B3M E;  4FW9 A;  5A2Q C;  3PRY A;  3B4T A;  4NBQ A;  1NHH A;  4K0K I;  4MYT A;  2WP8 A;  4YHH E;  2AJ4 A;  3M7N G;  1Z59 A;  5FWK A;  4U3B A;  4IFD B;  1XNR I;  2PNZ B;  1Z5A A;  4AIM A;  1N36 E;  4BA2 B;  4WUB A;  4JI7 I;  5IT9 Q;  4ED4 A;  1OYS A;  4YY3 I;  1MX0 A;  4IFD C;  4LFC I;  3T1Y I;  1Z0T A;  3B8H A;  4OKG A;  1P42 A;  1HNX I;  5BR8 E;  2R3V A;  4K0K E;  2BA0 G;  3Q1Q A;  4DUY I;  2VF3 A;  4DXL A;  1D6T A;  1EI1 A;  4DU8 A;  5K36 F;  5C0X A;  2UUA I;  4YHH I;  2BA1 G;  2C39 A;  2BR2 A;  3QT8 A;  5A2Q Q;  3J80 Q;  2HFU A;  2HHH E;  3OTO E;  2XEX A;  4DV7 I;  2Z5B B;  2UXC E;  1OJ4 A;  4B3M I;  4LF8 E;  1ZM9 A;  2WP8 B;  2ZIT A;  4FWG A;  4B3R I;  4LFA E;  2IOQ A;  3M85 G;  3PS3 A;  3KRN A;  4Z7Y A;  4JI8 E;  4DUZ E;  1HNX E;  1S16 A;  4DV4 E;  4QNK A;  1IBM I;  5L3J A;  4LF5 I;  4DR7 E;  1R6L A;  1FWL A;  2VQE E;  1FI4 A;  2UU9 E;  5LMN E;  5LL6 R;  3UHM A;  2E5L E;  3JAM Q;  5IT9 C;  3B82 A;  2UUB I;  4LFB E;  4IS9 A;  3B78 A;  2NN6 F;  4JI3 E;  4LPF A;  4FWD A;  4J3D A;  3J7A G;  4R1F A;  3PYD A;  4FW3 A;  4DV2 E;  4LF6 E;  4JI7 E;  3OTO I;  4IFD F;  5DRO A;  1I94 E;  1ZM3 A;  2HK3 A;  3V5R A;  2JE6 A;  4JI0 I;  3PYF A;  4IZJ A;  3Q6N A;  4DV5 I;  4AID A;  3M85 D;  3J7A M;  2UXD I;  1Y4U A;  1H74 A;  2PNZ A;  1KVK A;  2CGE A;  4OO1 D;  4FWH A;  1XNQ E;  2R42 A;  4DR5 I;  2O1T A;  3ZKD A;  1KIJ A;  1XMO E;  2O1V A;  4OO1 F;  5LMN I;  1ELO A;  1N32 I;  4WUD A;  5C0X D;  2C38 B;  5EKW A;  4JI6 E;  1N0U A;  3HKM A;  1FKA E;  2UXB I;  2V2Q A;  2BM1 A;  1Y6Z A;  4DV6 E;  4EMD A;  1N34 E;  5JEA F;  3K17 A;  1K47 A;  4GQU A;  4OO1 A;  1N0V C;  2PNM A;  4JI2 I;  1Z0G A;  4JI5 E;  3HUL A;  4JI4 I;  4NXN E;  2C39 B;  2JEA B;  1E3P A;  4JYA E;  2O3Z A;  4NXM E;  4DV3 E;  1S4E A;  4FW5 A;  1ZXN A;  3D4J A;  3JAM C;  4OX9 E;  2ZM6 E;  4JI3 I;  1N34 I;  1KKH A;  1Z0V A;  3PS2 A;  4DR1 E;  4DPY A;  1UDO A;  3WU4 A;  2NN6 C;  4LFC E;  4HY1 A;  4BA2 A;  1UDN A;  2V34 A;  5C0X C;  2CZ9 A;  5K36 D;  4UTG A;  1PIE A;  2HK2 A;  5BR8 I;  5GME A;  2HFS A;  4LF9 E;  3H1C A;  1FJG I;  2C37 A;  2PO1 A;  2WW4 A;  4X62 E;  2V8P A;  1USV A;  5FLX Q;  4DR5 E;  4MQY A;  5DNX A;  4DV1 I;  2BA0 D;  5C0X F;  2BM0 A;  4USM A;  1WUU A;  1DAR A;  1UDQ A;  2IER A;  4DV7 E;  2JEA A;  2UXC I;  5GMD A;  4DR6 I;  4GKJ I;  3ZKB A;  4JI2 E;  3QT5 A;  4HYM A;  3P76 A;  3LTO A;  2ZBK B;  1HNW E;  1H7U A;  1HR0 E;  5K36 B;  5ELW A;  3PS1 A;  3WU5 A;  4MYU A;  1Z0C A;  4JI4 E;  3ZZU A;  3GME A;  2VQE I;  2VQF I;  1B63 A;  1E3H A;  1RR9 A;  4JI8 I;  4DUZ I;  1IBL E;  5JEA C;  2PO0 A;  4Z7C A;  5EL9 A;  1Y4S A;  4DV0 I;  2UUC E;  3U1K A;  2F4V E;  3T1H I;  2AE8 A;  2CVE A;  4B3S I;  2JEB A;  2UUA E;  1XNR E;  4LF7 I;  2JT2 A; 
#chains in the Genus database with same CATH homology
 4LCG A;  4OKG A;  1P42 A;  2VES A;  1YHC A;  4OZE A;  4J3D A;  1XXE A;  1YH8 A;  3PS1 A;  4FW3 A;  5DRP A;  4MQY A;  3NZK A;  5DRO A;  3PS2 A;  4LCF A;  4U3D A;  3PS3 A;  4FW4 A;  5DRR A;  4MDT A;  4U3B A;  2IER A;  2GO3 A;  3P3G A;  3P3E A;  2J65 A;  4FW6 A;  5DRQ A;  3U1Y A;  3P3C A;  4LCH A;  2O3Z A;  3UHM A;  2IES A;  4FW5 A;  3P76 A;  4FW7 A;  2GO4 A;  2JT2 A;  4ISA A;  4IS9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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