3PS3A

Crystal structure of the escherichia coli lpxc/lpc-053 complex
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
source organism Escherichia coli ihe3034
molecule tags Hydrolase/antibiotic
total genus 82
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps3A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps3A02
4J3DA 4LCFA 4OKGA 1XXEA 3U1YA 3UHMA 2VESA 2JT2A 3PS3A 3NZKA 4U3BA 3P3CA 2GO3A 4LCHA 4MQYA 2GO4A 3P76A 3PS2A 3P3EA 4U3DA 2O3ZA 5DRPA 4ISAA 4FW5A 1YHCA 2J65A 4FW4A 2IESA 3P3GA 1P42A 2IERA 4FW6A 4MDTA 5DRRA 3PS1A 4FW3A 4IS9A 4LCGA 4OZEA 1YH8A 4FW7A 5DRQA 5DROA
chains in the Genus database with same CATH superfamily
5IWAE 3T1YI 3WU6A 5C0XF 1BKNA 4DPWA 3V5RA 1XNQI 4DV3I 5IT9Q 1EA6A 1KTVA 4FW5A 2A2CA 3QT7A 4JI1I 4B3MI 1J5EI 2NN6A 5A2QQ 2HKJA 1KIJA 4DR4I 2UXBE 2BM1A 4GKJI 4FWDA 4LFAE 5DROA 4PRXA 2CZ9A 3WU4A 4I3HA 3UHMA 1UDQA 3KRNA 4JI3I 2VF3A 5JEAB 4U3DA 4DV1I 3PRYA 5L3JA 2HFSA 2VQFE 3QT6A 4DV0I 1Z59A 3P3GA 4LFCI 4DV4I 2CG9A 1HR0E 2C37B 1R6MA 4FW3A 4X66I 4LF6E 3M7ND 2Z5CA 4IFDC 4DPYA 5C0XB 4ED4A 2UXDI 4JI2E 4AQYE 1HNWI 2GS8A 2OI2A 1VI7A 3GCMA 5JEAE 2CGEA 1PKPA 1FI4A 2IOQA 4JI7E 4P7AA 2O3ZA 3M6AA 5A2QC 4DV6E 1XNRE 2V2VA 4FW6A 4PRVA 3ZZ0A 1HNXE 5DRRA 2UXCE 4OO1E 4DV5E 3GONA 4URLA 1ZM3A 2F4VI 4OO1C 2BA0G 4USMA 4GKKE 4IZKA 1NHJA 4BA1A 2DEJA 2ZITA 4DR6I 1FJGI 4LF4I 1XMOI 2PO1B 4LF8E 4LCHA 4LF9E 4JYAI 4DR7I 2WNRA 2UUAI 1USVA 4DUYE 4LF5I 1Y5YA 2JEAA 3HJCA 1QZRA 4YY3E 4NXME 1FKAE 4DPXA 5LMNI 4IZJA 4MDTA 2PO0A 5K36F 1Z0WA 1Z5BA 1NHIA 4LCFA 4WUCA 1N36E 2O1UA 1N0VC 2CVEA 3B78A 4UTGA 1PVGA 2Z5EA 1XMQI 2VESA 1Z0GA 1OYRA 4DU7A 2ZM6I 1RREA 2AJ4A 3H1CA 2HHHI 4MQYA 2UU9E 1B62A 1E3PA 2V8PA 5FLXQ 4ISAA 4AM3A 1IBKE 4JI8I 4NXNI 5K36A 1RR9A 4FW4A 1Z5AA 2IERA 3ZZUA 4B3SE 1FNMA 2JEAB 4X65I 4IS9A 4DR3I 4IFDF 1YH8A 1H72C 2JE6B 4IZJB 4JI4E 5BR8I 3K85A 4DV2I 5JEAD 1I94E 1U2RA 4FWGA 1USUA 3M85G 1IBLE 1MG7A 3B8HA 4DV3E 2HK2A 2NN6F 3QT8A 3Q6MA 3J80Q 2BV3A 3CWVA 4LPFA 4P52A 3OTOE 4X64E 4JI1E 2UUCI 5EKWA 4JI5I 2J7KA 4JV5I 4OO1D 1N32E 5C0XD 2UUBE 4IFDA 4GKJE 4DR2E 2Q2EB 2JEBB 5K36B 4DU8A 4LCGA 2E5LI 3B82A 4DV7E 2GQ0A 4J3DA 2PNZA 4OX9E 3J7AG 4HACA 4LF7E 4JI3E 1WUUA 1N33I 2PO2A 3U1YA 4DR1E 5IWAI 3T1HE 3B4TA 1HNZE 3QT5A 1FWKA 3PYGA 1EI1A 1MX0A 4MYUA 5DNLA 4JI0E 3GMEA 1DARA 5LL6R 2PNMA 4FN5A 1FWLA 2NN6B 1NZ0A 3HULA 2O1VA 2Z5BA 4AIDA 4JI6I 3J80C 4LFAI 3F0NA 2VQEE 3PS3A 5IT9C 1B63A 1KVKA 2PO2B 1A6FA 3WU3A 3JAMQ 1Y60A 4BA2A 5JEAC 2J65A 2VQFI 2NN6E 1Z0EA 5DNXA 5C0XE 4K0KE 5GMDA 1OYPA 1HR0I 3J7AM 2BA0D 4X62E 3PYEA 5C0XC 4GQUA 4LF6I 1E3HA 2Z5BB 2Z5CB 1Y4UA 4DR5I 1IBME 4JI2I 4AQYI 4UT4A 1PIEA 5FWKA 4DUZE 3LTOA 2BR2A 1OYSA 1N34I 4JI7I 3ZKBA 3L7ZA 4DV6I 1XNRI 2AE8A 1HNXI 4LFBE 2UXCI 4NBQA 4DV5I 2WP8A 4DPUA 3CDJA 2HFUA 2C38A 3JAMC 4GKKI 1D6TA 2C39A 4IZKB 3P06A 5LMUE 3P3EA 4BA1B 1H7SA 5DRPA 1KKHA 4YHHE 4LF8I 4DR3E 4LF9I 4FWHA 4KHPE 4B3RE 2R42A 4N3OA 4DUYI 2WNRB 1N0UA 2PNLA 3T1YE 4NXMI 4YY3I 3Q6NA 3D4JA 3L7ZB 3M85D 4HY1A 4PU9A 2PO0B 1XNQE 2BA1G 1ZM4A 1N36I 1K47A 2IOPA 1Y4SA 5JEAF 3PS2A 4B3ME 1J5EE 2NN6D 2V2ZA 4WUDA 2UU9I 4B3TI 2C39B 4DR4E 3ZZTA 4XTJA 1IBKI 1ZM9A 2EFGA 5EL9A 2O1WA 4B3SI 4OO1F 4OKGA 2O1TA 4DXLA 4Z7YA 4JI4I 1NHHA 5JEAA 2A2DA 1I94I 1Z0CA 2JT2A 1Y6ZA 4HXZA 1IBLI 4DV1E 3P3CA 5FLXC 1Z0TA 3OTOI 2X7IA 4DV0E 4DV4E 1Z5CA 2C37A 4X64I 4LFCE 3K1JA 1UDSA 2HKEA 4X66E 5K36E 4OO1A 2ZBKB 3PYFA 4JI6E 5C0XA 1N32I 2UUBI 4DR2I 4KQVA 2UXDE 4IFDB 5K36C 1HNWE 1H7UA 4DV7I 3J81Q 2UXBI 1RHYA 4OX9I 4LF7I 4LOMA 2PNZB 1UDOA 4HACB 1HK7A 2WW4A 4MU0A 5ELWA 4DR1I 3Q1QA 3CDIA 3T1HI 1OJ4A 1HNZI 3K17A 1Z0VA 2V34A 4R1FA 4AIMA 2NPFA 4IFDE 3U1KA 2F4VE 4JI0I 3H4LA 5DRQA 4OO1B 1MU5A 4FW9A 4QNJA 4DR5E 3M7NG 2NN6C 2V2QA 2PO1A 1H74A 4QNKA 1FJGE 4DR6E 4LF4E 1XMOE 4JYAE 4DR7E 4Z7CA 2UUAE 4LF5E 3ZKDA 1UEKA 2GO3A 1N34E 2X36A 2VQEI 4MU4A 2DEIA 5LMNE 4IZJD 2XEXA 4DPTA 4MU3A 4BA2B 2HK3A 3PS1A 4OZEA 1ZXMA 2E1RA 2LJPA 4FW7A 4MYTA 4ZVIA 3LNUA 3J81C 1XMQE 1ELOA 1XXEA 2ZM6E 4K0KI 2HHHE 2R3VA 3GLLA 1R6LA 4X62I 3NZKA 5GMEA 2F1DA 2BM0A 4U3BA 1S4EA 4JI8E 4NXNE 3HKMA 2GO4A 5K36D 3DD6A 4RPFA 1IBMI 1S16A 4EMDA 1YHCA 4X65E 1XHKA 2JE6A 1P42A 4HYMA 4DUZI 5BR8E 4DV2E 2BR2B 4MU1A 3LPSA 2BA1D 1VISA 2UUCE 4LFBI 3ZM7A 4M1KA 4USKA 4B3TE 4JI5E 4JV5E 3WU5A 2WP8B 4IFDD 3P76A 2JEBA 4JG4A 2C38B 2E5LE 5LMUI 2IESA 1H73A 3PYDA 3V2UC 4YHHI 1Z0BA 1ZXNA 4KHPI 1ZM2A 4B3RI 1UDNA 4WUBA 1N33E
chains in the Genus database with same CATH topology
4J3DA 4LCFA 4OKGA 1XXEA 3U1YA 3UHMA 2VESA 2JT2A 3PS3A 3NZKA 4U3BA 3P3CA 2GO3A 4LCHA 4MQYA 2GO4A 3P76A 3PS2A 3P3EA 4U3DA 2O3ZA 5DRPA 4ISAA 4FW5A 1YHCA 2J65A 4FW4A 2IESA 3P3GA 1P42A 2IERA 4FW6A 4MDTA 5DRRA 3PS1A 4FW3A 4IS9A 4LCGA 4OZEA 1YH8A 4FW7A 5DRQA 5DROA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J3D A;  4LCF A;  4OKG A;  1XXE A;  3U1Y A;  3UHM A;  2VES A;  2JT2 A;  3PS3 A;  3NZK A;  4U3B A;  3P3C A;  2GO3 A;  4LCH A;  4MQY A;  2GO4 A;  3P76 A;  3PS2 A;  3P3E A;  4U3D A;  2O3Z A;  5DRP A;  4ISA A;  4FW5 A;  1YHC A;  2J65 A;  4FW4 A;  2IES A;  3P3G A;  1P42 A;  2IER A;  4FW6 A;  4MDT A;  5DRR A;  3PS1 A;  4FW3 A;  4IS9 A;  4LCG A;  4OZE A;  1YH8 A;  4FW7 A;  5DRQ A;  5DRO A; 
#chains in the Genus database with same CATH topology
 5IWA E;  3T1Y I;  3WU6 A;  5C0X F;  1BKN A;  4DPW A;  3V5R A;  1XNQ I;  4DV3 I;  5IT9 Q;  1EA6 A;  1KTV A;  4FW5 A;  2A2C A;  3QT7 A;  4JI1 I;  4B3M I;  1J5E I;  2NN6 A;  5A2Q Q;  2HKJ A;  1KIJ A;  4DR4 I;  2UXB E;  2BM1 A;  4GKJ I;  4FWD A;  4LFA E;  5DRO A;  4PRX A;  2CZ9 A;  3WU4 A;  4I3H A;  3UHM A;  1UDQ A;  3KRN A;  4JI3 I;  2VF3 A;  5JEA B;  4U3D A;  4DV1 I;  3PRY A;  5L3J A;  2HFS A;  2VQF E;  3QT6 A;  4DV0 I;  1Z59 A;  3P3G A;  4LFC I;  4DV4 I;  2CG9 A;  1HR0 E;  2C37 B;  1R6M A;  4FW3 A;  4X66 I;  4LF6 E;  3M7N D;  2Z5C A;  4IFD C;  4DPY A;  5C0X B;  4ED4 A;  2UXD I;  4JI2 E;  4AQY E;  1HNW I;  2GS8 A;  2OI2 A;  1VI7 A;  3GCM A;  5JEA E;  2CGE A;  1PKP A;  1FI4 A;  2IOQ A;  4JI7 E;  4P7A A;  2O3Z A;  3M6A A;  5A2Q C;  4DV6 E;  1XNR E;  2V2V A;  4FW6 A;  4PRV A;  3ZZ0 A;  1HNX E;  5DRR A;  2UXC E;  4OO1 E;  4DV5 E;  3GON A;  4URL A;  1ZM3 A;  2F4V I;  4OO1 C;  2BA0 G;  4USM A;  4GKK E;  4IZK A;  1NHJ A;  4BA1 A;  2DEJ A;  2ZIT A;  4DR6 I;  1FJG I;  4LF4 I;  1XMO I;  2PO1 B;  4LF8 E;  4LCH A;  4LF9 E;  4JYA I;  4DR7 I;  2WNR A;  2UUA I;  1USV A;  4DUY E;  4LF5 I;  1Y5Y A;  2JEA A;  3HJC A;  1QZR A;  4YY3 E;  4NXM E;  1FKA E;  4DPX A;  5LMN I;  4IZJ A;  4MDT A;  2PO0 A;  5K36 F;  1Z0W A;  1Z5B A;  1NHI A;  4LCF A;  4WUC A;  1N36 E;  2O1U A;  1N0V C;  2CVE A;  3B78 A;  4UTG A;  1PVG A;  2Z5E A;  1XMQ I;  2VES A;  1Z0G A;  1OYR A;  4DU7 A;  2ZM6 I;  1RRE A;  2AJ4 A;  3H1C A;  2HHH I;  4MQY A;  2UU9 E;  1B62 A;  1E3P A;  2V8P A;  5FLX Q;  4ISA A;  4AM3 A;  1IBK E;  4JI8 I;  4NXN I;  5K36 A;  1RR9 A;  4FW4 A;  1Z5A A;  2IER A;  3ZZU A;  4B3S E;  1FNM A;  2JEA B;  4X65 I;  4IS9 A;  4DR3 I;  4IFD F;  1YH8 A;  1H72 C;  2JE6 B;  4IZJ B;  4JI4 E;  5BR8 I;  3K85 A;  4DV2 I;  5JEA D;  1I94 E;  1U2R A;  4FWG A;  1USU A;  3M85 G;  1IBL E;  1MG7 A;  3B8H A;  4DV3 E;  2HK2 A;  2NN6 F;  3QT8 A;  3Q6M A;  3J80 Q;  2BV3 A;  3CWV A;  4LPF A;  4P52 A;  3OTO E;  4X64 E;  4JI1 E;  2UUC I;  5EKW A;  4JI5 I;  2J7K A;  4JV5 I;  4OO1 D;  1N32 E;  5C0X D;  2UUB E;  4IFD A;  4GKJ E;  4DR2 E;  2Q2E B;  2JEB B;  5K36 B;  4DU8 A;  4LCG A;  2E5L I;  3B82 A;  4DV7 E;  2GQ0 A;  4J3D A;  2PNZ A;  4OX9 E;  3J7A G;  4HAC A;  4LF7 E;  4JI3 E;  1WUU A;  1N33 I;  2PO2 A;  3U1Y A;  4DR1 E;  5IWA I;  3T1H E;  3B4T A;  1HNZ E;  3QT5 A;  1FWK A;  3PYG A;  1EI1 A;  1MX0 A;  4MYU A;  5DNL A;  4JI0 E;  3GME A;  1DAR A;  5LL6 R;  2PNM A;  4FN5 A;  1FWL A;  2NN6 B;  1NZ0 A;  3HUL A;  2O1V A;  2Z5B A;  4AID A;  4JI6 I;  3J80 C;  4LFA I;  3F0N A;  2VQE E;  3PS3 A;  5IT9 C;  1B63 A;  1KVK A;  2PO2 B;  1A6F A;  3WU3 A;  3JAM Q;  1Y60 A;  4BA2 A;  5JEA C;  2J65 A;  2VQF I;  2NN6 E;  1Z0E A;  5DNX A;  5C0X E;  4K0K E;  5GMD A;  1OYP A;  1HR0 I;  3J7A M;  2BA0 D;  4X62 E;  3PYE A;  5C0X C;  4GQU A;  4LF6 I;  1E3H A;  2Z5B B;  2Z5C B;  1Y4U A;  4DR5 I;  1IBM E;  4JI2 I;  4AQY I;  4UT4 A;  1PIE A;  5FWK A;  4DUZ E;  3LTO A;  2BR2 A;  1OYS A;  1N34 I;  4JI7 I;  3ZKB A;  3L7Z A;  4DV6 I;  1XNR I;  2AE8 A;  1HNX I;  4LFB E;  2UXC I;  4NBQ A;  4DV5 I;  2WP8 A;  4DPU A;  3CDJ A;  2HFU A;  2C38 A;  3JAM C;  4GKK I;  1D6T A;  2C39 A;  4IZK B;  3P06 A;  5LMU E;  3P3E A;  4BA1 B;  1H7S A;  5DRP A;  1KKH A;  4YHH E;  4LF8 I;  4DR3 E;  4LF9 I;  4FWH A;  4KHP E;  4B3R E;  2R42 A;  4N3O A;  4DUY I;  2WNR B;  1N0U A;  2PNL A;  3T1Y E;  4NXM I;  4YY3 I;  3Q6N A;  3D4J A;  3L7Z B;  3M85 D;  4HY1 A;  4PU9 A;  2PO0 B;  1XNQ E;  2BA1 G;  1ZM4 A;  1N36 I;  1K47 A;  2IOP A;  1Y4S A;  5JEA F;  3PS2 A;  4B3M E;  1J5E E;  2NN6 D;  2V2Z A;  4WUD A;  2UU9 I;  4B3T I;  2C39 B;  4DR4 E;  3ZZT A;  4XTJ A;  1IBK I;  1ZM9 A;  2EFG A;  5EL9 A;  2O1W A;  4B3S I;  4OO1 F;  4OKG A;  2O1T A;  4DXL A;  4Z7Y A;  4JI4 I;  1NHH A;  5JEA A;  2A2D A;  1I94 I;  1Z0C A;  2JT2 A;  1Y6Z A;  4HXZ A;  1IBL I;  4DV1 E;  3P3C A;  5FLX C;  1Z0T A;  3OTO I;  2X7I A;  4DV0 E;  4DV4 E;  1Z5C A;  2C37 A;  4X64 I;  4LFC E;  3K1J A;  1UDS A;  2HKE A;  4X66 E;  5K36 E;  4OO1 A;  2ZBK B;  3PYF A;  4JI6 E;  5C0X A;  1N32 I;  2UUB I;  4DR2 I;  4KQV A;  2UXD E;  4IFD B;  5K36 C;  1HNW E;  1H7U A;  4DV7 I;  3J81 Q;  2UXB I;  1RHY A;  4OX9 I;  4LF7 I;  4LOM A;  2PNZ B;  1UDO A;  4HAC B;  1HK7 A;  2WW4 A;  4MU0 A;  5ELW A;  4DR1 I;  3Q1Q A;  3CDI A;  3T1H I;  1OJ4 A;  1HNZ I;  3K17 A;  1Z0V A;  2V34 A;  4R1F A;  4AIM A;  2NPF A;  4IFD E;  3U1K A;  2F4V E;  4JI0 I;  3H4L A;  5DRQ A;  4OO1 B;  1MU5 A;  4FW9 A;  4QNJ A;  4DR5 E;  3M7N G;  2NN6 C;  2V2Q A;  2PO1 A;  1H74 A;  4QNK A;  1FJG E;  4DR6 E;  4LF4 E;  1XMO E;  4JYA E;  4DR7 E;  4Z7C A;  2UUA E;  4LF5 E;  3ZKD A;  1UEK A;  2GO3 A;  1N34 E;  2X36 A;  2VQE I;  4MU4 A;  2DEI A;  5LMN E;  4IZJ D;  2XEX A;  4DPT A;  4MU3 A;  4BA2 B;  2HK3 A;  3PS1 A;  4OZE A;  1ZXM A;  2E1R A;  2LJP A;  4FW7 A;  4MYT A;  4ZVI A;  3LNU A;  3J81 C;  1XMQ E;  1ELO A;  1XXE A;  2ZM6 E;  4K0K I;  2HHH E;  2R3V A;  3GLL A;  1R6L A;  4X62 I;  3NZK A;  5GME A;  2F1D A;  2BM0 A;  4U3B A;  1S4E A;  4JI8 E;  4NXN E;  3HKM A;  2GO4 A;  5K36 D;  3DD6 A;  4RPF A;  1IBM I;  1S16 A;  4EMD A;  1YHC A;  4X65 E;  1XHK A;  2JE6 A;  1P42 A;  4HYM A;  4DUZ I;  5BR8 E;  4DV2 E;  2BR2 B;  4MU1 A;  3LPS A;  2BA1 D;  1VIS A;  2UUC E;  4LFB I;  3ZM7 A;  4M1K A;  4USK A;  4B3T E;  4JI5 E;  4JV5 E;  3WU5 A;  2WP8 B;  4IFD D;  3P76 A;  2JEB A;  4JG4 A;  2C38 B;  2E5L E;  5LMU I;  2IES A;  1H73 A;  3PYD A;  3V2U C;  4YHH I;  1Z0B A;  1ZXN A;  4KHP I;  1ZM2 A;  4B3R I;  1UDN A;  4WUB A;  1N33 E; 
#chains in the Genus database with same CATH homology
 4J3D A;  4LCF A;  4OKG A;  1XXE A;  3U1Y A;  3UHM A;  2VES A;  2JT2 A;  3PS3 A;  3NZK A;  4U3B A;  3P3C A;  2GO3 A;  4LCH A;  4MQY A;  2GO4 A;  3P76 A;  3PS2 A;  3P3E A;  4U3D A;  2O3Z A;  5DRP A;  4ISA A;  4FW5 A;  1YHC A;  2J65 A;  4FW4 A;  2IES A;  3P3G A;  1P42 A;  2IER A;  4FW6 A;  4MDT A;  5DRR A;  3PS1 A;  4FW3 A;  4IS9 A;  4LCG A;  4OZE A;  1YH8 A;  4FW7 A;  5DRQ A;  5DRO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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