3PT1A

Structure of duf89 from saccharomyces cerevisiae co-crystallized with f6p.
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
469
structure length
464
Chain Sequence
HMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords UPF0364 protein YMR027W
publication title Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases
rcsb
source organism Saccharomyces cerevisiae
molecule tags Hydrolase
total genus 186
structure length 464
sequence length 469
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 3pt1A02
5BY0A 3PT1A 5F13A
chains in the Genus database with same CATH superfamily
3ZNIA 2C6CA 3OP0A 4NGTA 4P4DA 2PVWA 1CX8A 3PT1A 3O8ZA 2UV8G 2CBLA 3S9LA 1DE4C 4BTFA 3FEDA 2Y1NA 2XPLA 4X3RA 3SJEA 4GPLB 3D7GA 3D7FA 2VKZG 3OAKA 3PFVA 5D29A 5HKWA 2CIJA 5J3XA 2C6GA 3FF3A 1WJTA 4MCQA 2OOTA 3OB2B 2N3AB 4NGMA 4OC0A 4P4FA 4BPXB 5AXIA 4P4EA 3BUOB 3S9MA 4P45A 3VRPA 4A4BA 2XEGA 3FEEA 3OB1B 4P44A 3NFQA 3VROA 3RBUA 5ELYA 5HKYA 3D7DA 3HPGG 4MCSA 3VRQA 4OC1A 3IWWA 2XPNA 3VRRA 3PLFB 3VRNA 5BY0A 2XPOA 2JBKA 3SJXA 4OC4A 4RR2B 3BHXA 4BPUB 3KASA 5F09A 3BXMA 4JZ0A 4OC3A 3SJGA 4OC2A 4NGNA 1B47A 2JBJA 4JYWA 2PVVA 4NGQA 1FBVA 4NGRA 4BPWB 3BUMB 3BUNB 3FECA 1YVHA 4P4IA 4OMEA 4P4JA 3U88C 3BI1A 3VGOA 4W9YA 4LQGA 1Z9EA 3BUWB 4NGPA 2B4JC 4OC5A 3D7HA 2XEFA 4MCRA 3HMJG 2XEIA 4A4CA 2XPPA 5HKZA 3F9KC 1EO0A 3SJFA 2XEJA 3HPHE 3BI0A 4MCPA 4P4BA 1Z8LA 2C6PA 2Y1MA 2OR4A 3S9NA 5F13A 2DLAA 3BUXB 4NGSA
chains in the Genus database with same CATH topology
4RR2B 3HMJG 4BPUB 2VKZG 5BY0A 3PT1A 4BPXB 5F13A 4BPWB 2DLAA 2UV8G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BY0 A;  3PT1 A;  5F13 A; 
#chains in the Genus database with same CATH topology
 3ZNI A;  2C6C A;  3OP0 A;  4NGT A;  4P4D A;  2PVW A;  1CX8 A;  3PT1 A;  3O8Z A;  2UV8 G;  2CBL A;  3S9L A;  1DE4 C;  4BTF A;  3FED A;  2Y1N A;  2XPL A;  4X3R A;  3SJE A;  4GPL B;  3D7G A;  3D7F A;  2VKZ G;  3OAK A;  3PFV A;  5D29 A;  5HKW A;  2CIJ A;  5J3X A;  2C6G A;  3FF3 A;  1WJT A;  4MCQ A;  2OOT A;  3OB2 B;  2N3A B;  4NGM A;  4OC0 A;  4P4F A;  4BPX B;  5AXI A;  4P4E A;  3BUO B;  3S9M A;  4P45 A;  3VRP A;  4A4B A;  2XEG A;  3FEE A;  3OB1 B;  4P44 A;  3NFQ A;  3VRO A;  3RBU A;  5ELY A;  5HKY A;  3D7D A;  3HPG G;  4MCS A;  3VRQ A;  4OC1 A;  3IWW A;  2XPN A;  3VRR A;  3PLF B;  3VRN A;  5BY0 A;  2XPO A;  2JBK A;  3SJX A;  4OC4 A;  4RR2 B;  3BHX A;  4BPU B;  3KAS A;  5F09 A;  3BXM A;  4JZ0 A;  4OC3 A;  3SJG A;  4OC2 A;  4NGN A;  1B47 A;  2JBJ A;  4JYW A;  2PVV A;  4NGQ A;  1FBV A;  4NGR A;  4BPW B;  3BUM B;  3BUN B;  3FEC A;  1YVH A;  4P4I A;  4OME A;  4P4J A;  3U88 C;  3BI1 A;  3VGO A;  4W9Y A;  4LQG A;  1Z9E A;  3BUW B;  4NGP A;  2B4J C;  4OC5 A;  3D7H A;  2XEF A;  4MCR A;  3HMJ G;  2XEI A;  4A4C A;  2XPP A;  5HKZ A;  3F9K C;  1EO0 A;  3SJF A;  2XEJ A;  3HPH E;  3BI0 A;  4MCP A;  4P4B A;  1Z8L A;  2C6P A;  2Y1M A;  2OR4 A;  3S9N A;  5F13 A;  2DLA A;  3BUX B;  4NGS A; 
#chains in the Genus database with same CATH homology
 4RR2 B;  3HMJ G;  4BPU B;  2VKZ G;  5BY0 A;  3PT1 A;  4BPX B;  5F13 A;  4BPW B;  2DLA A;  2UV8 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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