3PT1A

Structure of duf89 from saccharomyces cerevisiae co-crystallized with f6p.
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
469
structure length
464
Chain Sequence
b'HMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords UPF0364 protein YMR027W
publication title Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases
rcsb
source organism Saccharomyces cerevisiae
molecule tags Hydrolase
total genus 186
structure length 464
sequence length 469
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 3pt1A02
5F13A 5BY0A 3PT1A
chains in the Genus database with same CATH superfamily
3U88C 1YVHA 2VKZG 5ELYA 2N3AB 3OB1B 4JZ0A 3PLFB 3O8ZA 3F9KC 4GPLB 4OC4A 3SJGA 4P44A 2PVWA 1CX8A 4P4DA 2JBJA 3HPGG 4NGRA 3RBUA 3BI1A 3BHXA 5HKYA 3BUNB 1DE4C 3VRPA 2JBKA 4NGSA 3D7HA 3BUWB 2XEIA 2C6CA 4LQGA 4MCRA 3VROA 3S9LA 3S9MA 2XEJA 4X3RA 4NGTA 4A4BA 3OP0A 4MCQA 3D7FA 1FBVA 3FEDA 2Y1MA 3FECA 3BUXB 2DLAA 4MCPA 3OAKA 5HKWA 3OB2B 4RR2B 3HMJG 2Y1NA 3SJXA 3BUOB 4JYWA 5F09A 3HPHE 5J3XA 4MCSA 2B4JC 2XPOA 2XEGA 4OC5A 4P4FA 3PT1A 4OC3A 3FEEA 3NFQA 3FF3A 4NGMA 3VRQA 4P4BA 5HKZA 1WJTA 4NGQA 3BXMA 2XPLA 1EO0A 2XPPA 3BUMB 4NGPA 4P4EA 3D7DA 3ZNIA 3IWWA 4BPWB 2C6GA 1Z9EA 2OR4A 3SJEA 4OC0A 4OC2A 3SJFA 3KASA 2UV8G 2PVVA 5BY0A 3D7GA 2CBLA 4A4CA 4W9YA 4OC1A 4BPUB 4OMEA 3VRRA 4BPXB 3VGOA 4P4IA 1Z8LA 5F13A 1B47A 5D29A 2OOTA 3PFVA 4NGNA 4P4JA 3VRNA 3BI0A 2XPNA 2CIJA 5AXIA 3S9NA 2XEFA 4P45A 4BTFA 2C6PA
chains in the Genus database with same CATH topology
2VKZG 2DLAA 5F13A 2UV8G 4BPWB 4RR2B 3PT1A 4BPUB 3HMJG 5BY0A 4BPXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F13 A;  5BY0 A;  3PT1 A; 
#chains in the Genus database with same CATH topology
 3U88 C;  1YVH A;  2VKZ G;  5ELY A;  2N3A B;  3OB1 B;  4JZ0 A;  3PLF B;  3O8Z A;  3F9K C;  4GPL B;  4OC4 A;  3SJG A;  4P44 A;  2PVW A;  1CX8 A;  4P4D A;  2JBJ A;  3HPG G;  4NGR A;  3RBU A;  3BI1 A;  3BHX A;  5HKY A;  3BUN B;  1DE4 C;  3VRP A;  2JBK A;  4NGS A;  3D7H A;  3BUW B;  2XEI A;  2C6C A;  4LQG A;  4MCR A;  3VRO A;  3S9L A;  3S9M A;  2XEJ A;  4X3R A;  4NGT A;  4A4B A;  3OP0 A;  4MCQ A;  3D7F A;  1FBV A;  3FED A;  2Y1M A;  3FEC A;  3BUX B;  2DLA A;  4MCP A;  3OAK A;  5HKW A;  3OB2 B;  4RR2 B;  3HMJ G;  2Y1N A;  3SJX A;  3BUO B;  4JYW A;  5F09 A;  3HPH E;  5J3X A;  4MCS A;  2B4J C;  2XPO A;  2XEG A;  4OC5 A;  4P4F A;  3PT1 A;  4OC3 A;  3FEE A;  3NFQ A;  3FF3 A;  4NGM A;  3VRQ A;  4P4B A;  5HKZ A;  1WJT A;  4NGQ A;  3BXM A;  2XPL A;  1EO0 A;  2XPP A;  3BUM B;  4NGP A;  4P4E A;  3D7D A;  3ZNI A;  3IWW A;  4BPW B;  2C6G A;  1Z9E A;  2OR4 A;  3SJE A;  4OC0 A;  4OC2 A;  3SJF A;  3KAS A;  2UV8 G;  2PVV A;  5BY0 A;  3D7G A;  2CBL A;  4A4C A;  4W9Y A;  4OC1 A;  4BPU B;  4OME A;  3VRR A;  4BPX B;  3VGO A;  4P4I A;  1Z8L A;  5F13 A;  1B47 A;  5D29 A;  2OOT A;  3PFV A;  4NGN A;  4P4J A;  3VRN A;  3BI0 A;  2XPN A;  2CIJ A;  5AXI A;  3S9N A;  2XEF A;  4P45 A;  4BTF A;  2C6P A; 
#chains in the Genus database with same CATH homology
 2VKZ G;  2DLA A;  5F13 A;  2UV8 G;  4BPW B;  4RR2 B;  3PT1 A;  4BPU B;  3HMJ G;  5BY0 A;  4BPX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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