3PT1A

Structure of duf89 from saccharomyces cerevisiae co-crystallized with f6p.
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
469
structure length
464
Chain Sequence
HMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases
rcsb
source organism Saccharomyces cerevisiae
molecule tags Hydrolase
molecule keywords UPF0364 protein YMR027W
total genus 186
structure length 464
sequence length 469
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 3pt1A02
3PT1A 5F13A 5BY0A
chains in the Genus database with same CATH superfamily
3BUOB 3SJXA 4GPLB 4NGQA 3PLFB 3RBUA 2C6GA 2B4JC 3BUWB 3D7FA 3VGOA 5HKWA 3BUXB 4BPUB 4RR2B 1EO0A 3BUNB 4BPWB 4OC4A 3O8ZA 2UV8G 2XEFA 2C6CA 2XEGA 4NGSA 4MCQA 2XPNA 4BPXB 3D7DA 3BHXA 3FEDA 5D29A 2PVVA 5HKYA 3SJEA 3D7GA 2JBJA 3SJGA 2XEJA 4P4FA 4X3RA 4OC2A 3BUMB 3S9LA 2XPPA 3S9MA 3ZNIA 3S9NA 1Z8LA 4NGRA 3VRNA 4BTFA 5BY0A 2PVWA 1WJTA 3D7HA 2Y1NA 4MCSA 4NGNA 4W9YA 4NGMA 4NGPA 5ELYA 2VKZG 5J3XA 3HMJG 3OP0A 3BXMA 3PFVA 3OB2B 3PT1A 3NFQA 3U88C 3FECA 4P45A 4P4JA 5F09A 4OC5A 3F9KC 4P4BA 3SJFA 3KASA 2C6PA 3IWWA 3BI0A 4P4IA 4P4EA 4A4BA 4MCPA 1Z9EA 2CBLA 4P4DA 3FEEA 4JYWA 1FBVA 2OOTA 5AXIA 4NGTA 4P44A 5HKZA 5F13A 1B47A 4OMEA 2XPOA 2JBKA 3FF3A 4OC3A 2N3AB 3VROA 2OR4A 3HPHE 4OC1A 3VRRA 3BI1A 4JZ0A 2DLAA 2CIJA 2Y1MA 3VRPA 4MCRA 4OC0A 4LQGA 3HPGG 2XEIA 1DE4C 3OAKA 3OB1B 1YVHA 4A4CA 3VRQA 2XPLA 1CX8A
chains in the Genus database with same CATH topology
5F13A 2VKZG 5BY0A 3PT1A 3HMJG 4BPXB 2DLAA 4BPWB 4BPUB 2UV8G 4RR2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PT1 A;  5F13 A;  5BY0 A; 
#chains in the Genus database with same CATH topology
 3BUO B;  3SJX A;  4GPL B;  4NGQ A;  3PLF B;  3RBU A;  2C6G A;  2B4J C;  3BUW B;  3D7F A;  3VGO A;  5HKW A;  3BUX B;  4BPU B;  4RR2 B;  1EO0 A;  3BUN B;  4BPW B;  4OC4 A;  3O8Z A;  2UV8 G;  2XEF A;  2C6C A;  2XEG A;  4NGS A;  4MCQ A;  2XPN A;  4BPX B;  3D7D A;  3BHX A;  3FED A;  5D29 A;  2PVV A;  5HKY A;  3SJE A;  3D7G A;  2JBJ A;  3SJG A;  2XEJ A;  4P4F A;  4X3R A;  4OC2 A;  3BUM B;  3S9L A;  2XPP A;  3S9M A;  3ZNI A;  3S9N A;  1Z8L A;  4NGR A;  3VRN A;  4BTF A;  5BY0 A;  2PVW A;  1WJT A;  3D7H A;  2Y1N A;  4MCS A;  4NGN A;  4W9Y A;  4NGM A;  4NGP A;  5ELY A;  2VKZ G;  5J3X A;  3HMJ G;  3OP0 A;  3BXM A;  3PFV A;  3OB2 B;  3PT1 A;  3NFQ A;  3U88 C;  3FEC A;  4P45 A;  4P4J A;  5F09 A;  4OC5 A;  3F9K C;  4P4B A;  3SJF A;  3KAS A;  2C6P A;  3IWW A;  3BI0 A;  4P4I A;  4P4E A;  4A4B A;  4MCP A;  1Z9E A;  2CBL A;  4P4D A;  3FEE A;  4JYW A;  1FBV A;  2OOT A;  5AXI A;  4NGT A;  4P44 A;  5HKZ A;  5F13 A;  1B47 A;  4OME A;  2XPO A;  2JBK A;  3FF3 A;  4OC3 A;  2N3A B;  3VRO A;  2OR4 A;  3HPH E;  4OC1 A;  3VRR A;  3BI1 A;  4JZ0 A;  2DLA A;  2CIJ A;  2Y1M A;  3VRP A;  4MCR A;  4OC0 A;  4LQG A;  3HPG G;  2XEI A;  1DE4 C;  3OAK A;  3OB1 B;  1YVH A;  4A4C A;  3VRQ A;  2XPL A;  1CX8 A; 
#chains in the Genus database with same CATH homology
 5F13 A;  2VKZ G;  5BY0 A;  3PT1 A;  3HMJ G;  4BPX B;  2DLA A;  4BPW B;  4BPU B;  2UV8 G;  4RR2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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