3PVPA

Structure of mycobacterium tuberculosis dnaa-dbd in complex with box2 dna
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
96
structure length
96
Chain Sequence
ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein/dna
molecule keywords Chromosomal replication initiator protein dnaA
publication title Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 38
structure length 96
sequence length 96
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08299 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1750.10 Mainly Alpha Orthogonal Bundle Chromosomal Replication Initiator Protein Dnaa; Chain: A; Chromosomal Replication Initiator Protein Dnaa; Chain: A; 3pvpA00
1L8QA 3R8FA 2HCBA 1J1VA 3PVVA 3PVPA
chains in the Genus database with same CATH superfamily
1L8QA 3R8FA 2HCBA 1J1VA 3PVVA 3PVPA
chains in the Genus database with same CATH topology
1L8QA 3R8FA 2HCBA 1J1VA 3PVVA 3PVPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L8Q A;  3R8F A;  2HCB A;  1J1V A;  3PVV A;  3PVP A; 
#chains in the Genus database with same CATH topology
 1L8Q A;  3R8F A;  2HCB A;  1J1V A;  3PVV A;  3PVP A; 
#chains in the Genus database with same CATH homology
 1L8Q A;  3R8F A;  2HCB A;  1J1V A;  3PVV A;  3PVP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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