3PYIA

Structure of the n-terminal domain of c. elegans sas-6
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
167
structure length
142
Chain Sequence
TSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNIVPTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis of the 9-fold symmetry of centrioles.
pubmed doi rcsb
molecule tags Structural protein
source organism Caenorhabditis elegans
molecule keywords Spindle assembly abnormal protein 6
total genus 34
structure length 142
sequence length 167
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 3pyiA00
3Q0YA 4CKMA 3PYIA 3Q0XA 2Y3WA 2Y3VA 4CKNA 4GEXA 4CKPA 4GEUA 4GFCA 4G79A 4GFAA
chains in the Genus database with same CATH superfamily
3SR2A 5CJ0A 4CKMA 4XA4A 3MUDA 3RWRD 5CJ4A 1IK9A 4G79A 5CHXA 2Y3WA 2Y3VA 4GFCA 4GFAA 3PYIA 3Q0XA 3II6A 4CKPA 4GEXA 1FU1A 2QM4A 3Q0YA 3RWRA 3SR2C 2R9AA 4CKNA 4GEUA
chains in the Genus database with same CATH topology
3Q0YA 4CKMA 3PYIA 3Q0XA 2Y3WA 2Y3VA 4CKNA 4GEXA 4CKPA 4GEUA 4GFCA 4G79A 4GFAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q0Y A;  4CKM A;  3PYI A;  3Q0X A;  2Y3W A;  2Y3V A;  4CKN A;  4GEX A;  4CKP A;  4GEU A;  4GFC A;  4G79 A;  4GFA A; 
#chains in the Genus database with same CATH topology
 3SR2 A;  5CJ0 A;  4CKM A;  4XA4 A;  3MUD A;  3RWR D;  5CJ4 A;  1IK9 A;  4G79 A;  5CHX A;  2Y3W A;  2Y3V A;  4GFC A;  4GFA A;  3PYI A;  3Q0X A;  3II6 A;  4CKP A;  4GEX A;  1FU1 A;  2QM4 A;  3Q0Y A;  3RWR A;  3SR2 C;  2R9A A;  4CKN A;  4GEU A; 
#chains in the Genus database with same CATH homology
 3Q0Y A;  4CKM A;  3PYI A;  3Q0X A;  2Y3W A;  2Y3V A;  4CKN A;  4GEX A;  4CKP A;  4GEU A;  4GFC A;  4G79 A;  4GFA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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