3Q0YA

N-terminal domain of c. reinhardtii sas-6 homolog bld12p
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
145
structure length
145
Chain Sequence
GFDLSTATTLFWRPVPVHVKQQDREDVLEELTFRILTGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFKQLPHITLAFRPGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Centriole protein
publication title Structural basis of the 9-fold symmetry of centrioles.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 32
structure length 145
sequence length 145
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2010-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 3q0yA00
3Q0YA 3Q0XA 4GEXA 4G79A 4CKNA 4CKPA 2Y3VA 2Y3WA 4GFCA 3PYIA 4GEUA 4GFAA 4CKMA
chains in the Genus database with same CATH superfamily
3SR2A 4XA4A 1IK9A 4GFCA 3RWRA 3MUDA 3SR2C 4GFAA 3Q0YA 3Q0XA 4GEXA 4CKPA 2Y3VA 2Y3WA 3PYIA 2QM4A 5CHXA 3II6A 4G79A 4CKNA 2R9AA 5CJ0A 4GEUA 5CJ4A 1FU1A 3RWRD 4CKMA
chains in the Genus database with same CATH topology
3Q0YA 3Q0XA 4GEXA 4G79A 4CKNA 4CKPA 2Y3VA 2Y3WA 4GFCA 3PYIA 4GEUA 4GFAA 4CKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q0Y A;  3Q0X A;  4GEX A;  4G79 A;  4CKN A;  4CKP A;  2Y3V A;  2Y3W A;  4GFC A;  3PYI A;  4GEU A;  4GFA A;  4CKM A; 
#chains in the Genus database with same CATH topology
 3SR2 A;  4XA4 A;  1IK9 A;  4GFC A;  3RWR A;  3MUD A;  3SR2 C;  4GFA A;  3Q0Y A;  3Q0X A;  4GEX A;  4CKP A;  2Y3V A;  2Y3W A;  3PYI A;  2QM4 A;  5CHX A;  3II6 A;  4G79 A;  4CKN A;  2R9A A;  5CJ0 A;  4GEU A;  5CJ4 A;  1FU1 A;  3RWR D;  4CKM A; 
#chains in the Genus database with same CATH homology
 3Q0Y A;  3Q0X A;  4GEX A;  4G79 A;  4CKN A;  4CKP A;  2Y3V A;  2Y3W A;  4GFC A;  3PYI A;  4GEU A;  4GFA A;  4CKM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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