3QD7X

Crystal structure of ydal, a stand-alone small muts-related protein from escherichia coli
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
131
structure length
131
Chain Sequence
DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Uncharacterized protein ydaL
publication title Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 38
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2011-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3qd7X00
4OCHA 2VKCA 2ZQEA 3QD7X 4OD6A 2D9IA 3FAUA
chains in the Genus database with same CATH superfamily
2DGRA 4X65H 3OSSD 3T1YH 3AEVB 2NN6G 2O4CA 2G8YA 4E9JA 2VQEH 4B3MH 2AXYA 5LL6b 4PDBA 2UXDH 2D9IA 1F0XA 1XNQH 2LTLA 3EZJA 2CTKA 4DV2H 3T1HH 1XMQH 2F4VH 2Z0SA 1ZZIA 5LMNH 4JI0H 2BA0A 1NXUA 1I94H 2FMRA 4DV7H 4JI5H 1WE8A 4X62H 4FJSA 5BR8H 4QMFB 1PQXA 3J81W 1TUAA 3I0PA 4DV5H 4JI6H 2E3UA 4LF5H 4DR6H 1MSZA 1J5KA 4B8CD 4H8AA 2YQRA 4AIMA 2CWFA 1UG8A 4OD6A 4LF7H 5K36G 4JI8H 2JE6I 4WALA 4LF4H 4DR1H 2PT7G 4FJUA 3UOEA 2FFMA 4BA2I 1WTJA 2Y3MA 3OTOH 1WVNA 2UU9H 4LIJA 4YHHH 4LF8H 4JI2H 4BA1I 1J4WA 5FLXW 1V8CA 1HNZH 2M8WA 2OPUA 3KDKA 4B3TH 1N32H 1ZTGA 4OX9H 4DR4H 2K1HA 5A2QW 4K0KH 4KHPH 3U1KA 1SEIA 1ZZKA 2FPHX 3J80W 1ODHA 4X64H 2UUCH 1V9NA 2VKCA 2CPQA 4DUYH 1IBMH 1X4NA 4X66H 1N34H 2JEBI 1X4MA 4DV3H 4JI4H 4LFAH 1AN7A 4DV4H 4JI1H 4OO1G 2UXBH 2P2RA 3JAMW 4JVYA 1X9ZA 2CTFA 4G08A 1S03G 2JA9A 5IWAH 1EC6A 3V69A 1XMOH 1S20A 2HH2A 1WHRA 4LF9H 4EC5A 2QNDA 4GKKH 4DUZH 3L7ZC 2ZQEA 2JZXA 3GR5A 2CPMA 4DR7H 1IBLH 4DR5H 1X0AA 2CTMA 4YY3H 4DV1H 1N36H 4LF6H 2CTEA 2MJHA 4B3RH 1K1GA 2HHHH 1IBKH 5C0XG 2LRRA 4B8TA 3QD7X 5LMUH 1XRHA 2PY9A 1DTJA 4OCHA 2HH3A 2OPVA 2ZM6H 4DR2H 4JVHA 4NZRM 1HR0H 4DV6H 4DV0H 1XNRH 2UUAH 2JVZA 2X06A 4LFCH 2M6QA 4AQYH 3FAUA 3OETA 4B3SH 5DT9A 2ANNA 4JYAH 4NXMH 5IT9W 5JEAG 3VKEA 2JEAI 1DT4A 1VIHA 2CTLA 2LF0A 4DR3H 2A1SA 1ZZJA 1N33H 3J7AK 1FKAH 2PQUA 4AM3A 4LFBH 1HNWH 1KHMA 4NBQA 2VQFH 4JI7H 4IFDG 3SB1A 2BL5A 1VBIA 4NXNH 2E5LH 3KDGA 3GABA 4NZTM 4GKJH 1VIGA 4JV5H 4JI3H 3GKUA 3RF2A 2CWHA 2ANRA 1FJGH 1HNXH 1Z2IA 1J5EH 4WANA 2CTJA 3NCVA 1I6UA 2UXCH 2LTMA 2UUBH
chains in the Genus database with same CATH topology
4X65H 3OSSD 3T1YH 3J7AK 2O4CA 2UXDH 4E9JA 2VQEH 4B3MH 5LL6b 4PDBA 2D9IA 1F0XA 1XNQH 3EZJA 4DV2H 3T1HH 1XMQH 2F4VH 5LMNH 4JI0H 4JI5H 1I94H 4DV7H 4X62H 5BR8H 3J81W 4DV5H 4JI6H 4LF5H 4DR6H 4B8CD 4OD6A 4LF7H 4JI8H 4LF4H 4DR1H 2PT7G 3OTOH 2Y3MA 2UU9H 4YHHH 4LF8H 4JI2H 5FLXW 1HNZH 3KDKA 4B3TH 1N32H 4OX9H 4DR4H 5A2QW 4K0KH 4KHPH 2FPHX 1SEIA 3J80W 1ODHA 4X64H 2UUCH 2VKCA 4DUYH 1IBMH 4X66H 1N34H 4DV3H 4JI4H 4LFAH 1AN7A 4DV4H 4JI1H 2UXBH 3JAMW 1X9ZA 4G08A 1S03G 5IWAH 1XMOH 4LF9H 4EC5A 4GKKH 4DUZH 2ZQEA 3GR5A 4DR7H 1IBLH 4DR5H 4YY3H 4DV1H 1N36H 4LF6H 4B3RH 2HHHH 1IBKH 3QD7X 5LMUH 4OCHA 2ZM6H 4DR2H 4NZRM 1HR0H 4DV6H 4DV0H 1XNRH 2UUAH 4LFCH 4AQYH 3OETA 3FAUA 4B3SH 5DT9A 4JYAH 4NXMH 5IT9W 4DR3H 2LF0A 1N33H 1FKAH 4LFBH 1HNWH 2VQFH 4JI7H 3SB1A 4NXNH 2E5LH 3KDGA 3GABA 4NZTM 4GKJH 4JV5H 4JI3H 3RF2A 1FJGH 1HNXH 1J5EH 3NCVA 1I6UA 2UXCH 2UUBH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  2VKC A;  2ZQE A;  3QD7 X;  4OD6 A;  2D9I A;  3FAU A; 
#chains in the Genus database with same CATH topology
 2DGR A;  4X65 H;  3OSS D;  3T1Y H;  3AEV B;  2NN6 G;  2O4C A;  2G8Y A;  4E9J A;  2VQE H;  4B3M H;  2AXY A;  5LL6 b;  4PDB A;  2UXD H;  2D9I A;  1F0X A;  1XNQ H;  2LTL A;  3EZJ A;  2CTK A;  4DV2 H;  3T1H H;  1XMQ H;  2F4V H;  2Z0S A;  1ZZI A;  5LMN H;  4JI0 H;  2BA0 A;  1NXU A;  1I94 H;  2FMR A;  4DV7 H;  4JI5 H;  1WE8 A;  4X62 H;  4FJS A;  5BR8 H;  4QMF B;  1PQX A;  3J81 W;  1TUA A;  3I0P A;  4DV5 H;  4JI6 H;  2E3U A;  4LF5 H;  4DR6 H;  1MSZ A;  1J5K A;  4B8C D;  4H8A A;  2YQR A;  4AIM A;  2CWF A;  1UG8 A;  4OD6 A;  4LF7 H;  5K36 G;  4JI8 H;  2JE6 I;  4WAL A;  4LF4 H;  4DR1 H;  2PT7 G;  4FJU A;  3UOE A;  2FFM A;  4BA2 I;  1WTJ A;  2Y3M A;  3OTO H;  1WVN A;  2UU9 H;  4LIJ A;  4YHH H;  4LF8 H;  4JI2 H;  4BA1 I;  1J4W A;  5FLX W;  1V8C A;  1HNZ H;  2M8W A;  2OPU A;  3KDK A;  4B3T H;  1N32 H;  1ZTG A;  4OX9 H;  4DR4 H;  2K1H A;  5A2Q W;  4K0K H;  4KHP H;  3U1K A;  1SEI A;  1ZZK A;  2FPH X;  3J80 W;  1ODH A;  4X64 H;  2UUC H;  1V9N A;  2VKC A;  2CPQ A;  4DUY H;  1IBM H;  1X4N A;  4X66 H;  1N34 H;  2JEB I;  1X4M A;  4DV3 H;  4JI4 H;  4LFA H;  1AN7 A;  4DV4 H;  4JI1 H;  4OO1 G;  2UXB H;  2P2R A;  3JAM W;  4JVY A;  1X9Z A;  2CTF A;  4G08 A;  1S03 G;  2JA9 A;  5IWA H;  1EC6 A;  3V69 A;  1XMO H;  1S20 A;  2HH2 A;  1WHR A;  4LF9 H;  4EC5 A;  2QND A;  4GKK H;  4DUZ H;  3L7Z C;  2ZQE A;  2JZX A;  3GR5 A;  2CPM A;  4DR7 H;  1IBL H;  4DR5 H;  1X0A A;  2CTM A;  4YY3 H;  4DV1 H;  1N36 H;  4LF6 H;  2CTE A;  2MJH A;  4B3R H;  1K1G A;  2HHH H;  1IBK H;  5C0X G;  2LRR A;  4B8T A;  3QD7 X;  5LMU H;  1XRH A;  2PY9 A;  1DTJ A;  4OCH A;  2HH3 A;  2OPV A;  2ZM6 H;  4DR2 H;  4JVH A;  4NZR M;  1HR0 H;  4DV6 H;  4DV0 H;  1XNR H;  2UUA H;  2JVZ A;  2X06 A;  4LFC H;  2M6Q A;  4AQY H;  3FAU A;  3OET A;  4B3S H;  5DT9 A;  2ANN A;  4JYA H;  4NXM H;  5IT9 W;  5JEA G;  3VKE A;  2JEA I;  1DT4 A;  1VIH A;  2CTL A;  2LF0 A;  4DR3 H;  2A1S A;  1ZZJ A;  1N33 H;  3J7A K;  1FKA H;  2PQU A;  4AM3 A;  4LFB H;  1HNW H;  1KHM A;  4NBQ A;  2VQF H;  4JI7 H;  4IFD G;  3SB1 A;  2BL5 A;  1VBI A;  4NXN H;  2E5L H;  3KDG A;  3GAB A;  4NZT M;  4GKJ H;  1VIG A;  4JV5 H;  4JI3 H;  3GKU A;  3RF2 A;  2CWH A;  2ANR A;  1FJG H;  1HNX H;  1Z2I A;  1J5E H;  4WAN A;  2CTJ A;  3NCV A;  1I6U A;  2UXC H;  2LTM A;  2UUB H; 
#chains in the Genus database with same CATH homology
 4X65 H;  3OSS D;  3T1Y H;  3J7A K;  2O4C A;  2UXD H;  4E9J A;  2VQE H;  4B3M H;  5LL6 b;  4PDB A;  2D9I A;  1F0X A;  1XNQ H;  3EZJ A;  4DV2 H;  3T1H H;  1XMQ H;  2F4V H;  5LMN H;  4JI0 H;  4JI5 H;  1I94 H;  4DV7 H;  4X62 H;  5BR8 H;  3J81 W;  4DV5 H;  4JI6 H;  4LF5 H;  4DR6 H;  4B8C D;  4OD6 A;  4LF7 H;  4JI8 H;  4LF4 H;  4DR1 H;  2PT7 G;  3OTO H;  2Y3M A;  2UU9 H;  4YHH H;  4LF8 H;  4JI2 H;  5FLX W;  1HNZ H;  3KDK A;  4B3T H;  1N32 H;  4OX9 H;  4DR4 H;  5A2Q W;  4K0K H;  4KHP H;  2FPH X;  1SEI A;  3J80 W;  1ODH A;  4X64 H;  2UUC H;  2VKC A;  4DUY H;  1IBM H;  4X66 H;  1N34 H;  4DV3 H;  4JI4 H;  4LFA H;  1AN7 A;  4DV4 H;  4JI1 H;  2UXB H;  3JAM W;  1X9Z A;  4G08 A;  1S03 G;  5IWA H;  1XMO H;  4LF9 H;  4EC5 A;  4GKK H;  4DUZ H;  2ZQE A;  3GR5 A;  4DR7 H;  1IBL H;  4DR5 H;  4YY3 H;  4DV1 H;  1N36 H;  4LF6 H;  4B3R H;  2HHH H;  1IBK H;  3QD7 X;  5LMU H;  4OCH A;  2ZM6 H;  4DR2 H;  4NZR M;  1HR0 H;  4DV6 H;  4DV0 H;  1XNR H;  2UUA H;  4LFC H;  4AQY H;  3OET A;  3FAU A;  4B3S H;  5DT9 A;  4JYA H;  4NXM H;  5IT9 W;  4DR3 H;  2LF0 A;  1N33 H;  1FKA H;  4LFB H;  1HNW H;  2VQF H;  4JI7 H;  3SB1 A;  4NXN H;  2E5L H;  3KDG A;  3GAB A;  4NZT M;  4GKJ H;  4JV5 H;  4JI3 H;  3RF2 A;  1FJG H;  1HNX H;  1J5E H;  3NCV A;  1I6U A;  2UXC H;  2UUB H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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