3QD7X

Crystal structure of ydal, a stand-alone small muts-related protein from escherichia coli
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
131
structure length
131
Chain Sequence
DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Uncharacterized protein ydaL
publication title Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 38
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2011-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3qd7X00
2ZQEA 3FAUA 4OCHA 2D9IA 3QD7X 4OD6A 2VKCA
chains in the Genus database with same CATH superfamily
2QNDA 4DR4H 1N33H 4DUZH 1MSZA 4LFAH 2G8YA 3T1HH 2VQFH 1I94H 1ZTGA 2Y3MA 1XNRH 2JEBI 1AN7A 2CPMA 1VIGA 1XRHA 2DGRA 4NZTM 4IFDG 2AXYA 1VIHA 1J5EH 1EC6A 5LMNH 1IBKH 2CTLA 3J80W 2JEAI 3OTOH 1J4WA 2UUAH 4JYAH 2PY9A 1V9NA 3EZJA 2ANNA 3GR5A 2M8WA 4X65H 4JI4H 4DR5H 2HH3A 2VQEH 1N34H 1IBLH 4NZRM 1XMQH 4K0KH 4KHPH 4JI7H 2LTLA 5IWAH 4LF6H 2CTFA 5DT9A 2M6QA 2HHHH 1FJGH 2CTKA 4OX9H 4B3MH 1XNQH 2FMRA 4NBQA 5LMUH 1N36H 1WTJA 2E5LH 3L7ZC 4DV5H 4YHHH 4DV6H 1ZZIA 4B3TH 4JI6H 1ZZJA 4JI5H 1Z2IA 4X66H 4NXNH 2UUCH 4WANA 4LF9H 4QMFB 4WALA 3GABA 4JVYA 3OETA 5LL6b 3NCVA 2CTMA 4BA1I 4YY3H 2FPHX 4LIJA 1X0AA 1SEIA 1F0XA 5IT9W 2UXCH 4DR2H 4B3RH 4X64H 5C0XG 2UU9H 4B3SH 2F4VH 1ZZKA 2NN6G 4JVHA 2LRRA 2UXBH 1DT4A 2BA0A 2ZQEA 2HH2A 1PQXA 3GKUA 1XMOH 4JI3H 4AQYH 2O4CA 3QD7X 5A2QW 2UXDH 4JI1H 4DR6H 4LF5H 1FKAH 1VBIA 2E3UA 1KHMA 4DV7H 1X4MA 2Z0SA 2OPVA 4AIMA 1HNXH 2ANRA 3I0PA 4JI8H 4B8CD 4X62H 2LF0A 1ODHA 1HNWH 4DR7H 4DR3H 1J5KA 4GKKH 1UG8A 1K1GA 4JI2H 3OSSD 4DR1H 1WVNA 1HNZH 3FAUA 5JEAG 4B8TA 4JI0H 4DUYH 4JV5H 4E9JA 4G08A 4OD6A 2OPUA 3J81W 2K1HA 3UOEA 4LF8H 3U1KA 2CTJA 3JAMW 4DV0H 2YQRA 2D9IA 4OCHA 2A1SA 4DV4H 3VKEA 3SB1A 2PQUA 2MJHA 1WHRA 2X06A 4NXMH 1S03G 4GKJH 2JA9A 2UUBH 4EC5A 2ZM6H 4DV1H 1S20A 4FJSA 4DV2H 2CWFA 4OO1G 3J7AK 4AM3A 1X4NA 4BA2I 1X9ZA 1IBMH 1DTJA 5FLXW 4LFCH 1V8CA 4LF7H 2CPQA 4LF4H 4DV3H 3KDGA 4PDBA 2JE6I 3T1YH 4H8AA 3AEVB 1WE8A 3KDKA 4FJUA 5BR8H 2VKCA 1N32H 1I6UA 2JZXA 1TUAA 3V69A 5K36G 2CWHA 2LTMA 1HR0H 2CTEA 4LFBH 2P2RA 1NXUA 2JVZA 2BL5A 3RF2A 2PT7G 2FFMA
chains in the Genus database with same CATH topology
4DR4H 1N33H 4DUZH 4LFAH 3T1HH 2VQFH 1I94H 1XNRH 2Y3MA 1AN7A 4NZTM 1J5EH 5LMNH 1IBKH 3J80W 4JYAH 2UUAH 3EZJA 3GR5A 4X65H 4JI4H 4DR5H 2VQEH 1N34H 1IBLH 4NZRM 1XMQH 4K0KH 4KHPH 4JI7H 5IWAH 4LF6H 5DT9A 2HHHH 1FJGH 4OX9H 4B3MH 1XNQH 5LMUH 1N36H 2E5LH 4DV5H 4YHHH 4DV6H 4B3TH 4JI6H 4NXNH 4JI5H 4X66H 2UUCH 4LF9H 3GABA 3OETA 5LL6b 3NCVA 4YY3H 2FPHX 1SEIA 1F0XA 5IT9W 2UXCH 4DR2H 4B3RH 4X64H 2UU9H 4B3SH 2F4VH 2UXBH 2ZQEA 1XMOH 4JI3H 4AQYH 2O4CA 3QD7X 5A2QW 2UXDH 4JI1H 4DR6H 4LF5H 1FKAH 4DV7H 1HNXH 4JI8H 4B8CD 4X62H 2LF0A 1ODHA 1HNWH 4DR7H 4DR3H 4GKKH 4JI2H 3OSSD 4DR1H 1HNZH 4JI0H 3FAUA 4JV5H 4DUYH 4E9JA 4G08A 4OD6A 3J81W 4LF8H 3JAMW 4DV0H 4OCHA 2D9IA 4DV4H 3SB1A 4NXMH 1S03G 4GKJH 2UUBH 4EC5A 2ZM6H 4DV1H 4DV2H 3J7AK 1X9ZA 1IBMH 5FLXW 4LFCH 4LF7H 4LF4H 4DV3H 3KDGA 4PDBA 3T1YH 3KDKA 5BR8H 2VKCA 1N32H 1I6UA 1HR0H 4LFBH 3OTOH 3RF2A 2PT7G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQE A;  3FAU A;  4OCH A;  2D9I A;  3QD7 X;  4OD6 A;  2VKC A; 
#chains in the Genus database with same CATH topology
 2QND A;  4DR4 H;  1N33 H;  4DUZ H;  1MSZ A;  4LFA H;  2G8Y A;  3T1H H;  2VQF H;  1I94 H;  1ZTG A;  2Y3M A;  1XNR H;  2JEB I;  1AN7 A;  2CPM A;  1VIG A;  1XRH A;  2DGR A;  4NZT M;  4IFD G;  2AXY A;  1VIH A;  1J5E H;  1EC6 A;  5LMN H;  1IBK H;  2CTL A;  3J80 W;  2JEA I;  3OTO H;  1J4W A;  2UUA H;  4JYA H;  2PY9 A;  1V9N A;  3EZJ A;  2ANN A;  3GR5 A;  2M8W A;  4X65 H;  4JI4 H;  4DR5 H;  2HH3 A;  2VQE H;  1N34 H;  1IBL H;  4NZR M;  1XMQ H;  4K0K H;  4KHP H;  4JI7 H;  2LTL A;  5IWA H;  4LF6 H;  2CTF A;  5DT9 A;  2M6Q A;  2HHH H;  1FJG H;  2CTK A;  4OX9 H;  4B3M H;  1XNQ H;  2FMR A;  4NBQ A;  5LMU H;  1N36 H;  1WTJ A;  2E5L H;  3L7Z C;  4DV5 H;  4YHH H;  4DV6 H;  1ZZI A;  4B3T H;  4JI6 H;  1ZZJ A;  4JI5 H;  1Z2I A;  4X66 H;  4NXN H;  2UUC H;  4WAN A;  4LF9 H;  4QMF B;  4WAL A;  3GAB A;  4JVY A;  3OET A;  5LL6 b;  3NCV A;  2CTM A;  4BA1 I;  4YY3 H;  2FPH X;  4LIJ A;  1X0A A;  1SEI A;  1F0X A;  5IT9 W;  2UXC H;  4DR2 H;  4B3R H;  4X64 H;  5C0X G;  2UU9 H;  4B3S H;  2F4V H;  1ZZK A;  2NN6 G;  4JVH A;  2LRR A;  2UXB H;  1DT4 A;  2BA0 A;  2ZQE A;  2HH2 A;  1PQX A;  3GKU A;  1XMO H;  4JI3 H;  4AQY H;  2O4C A;  3QD7 X;  5A2Q W;  2UXD H;  4JI1 H;  4DR6 H;  4LF5 H;  1FKA H;  1VBI A;  2E3U A;  1KHM A;  4DV7 H;  1X4M A;  2Z0S A;  2OPV A;  4AIM A;  1HNX H;  2ANR A;  3I0P A;  4JI8 H;  4B8C D;  4X62 H;  2LF0 A;  1ODH A;  1HNW H;  4DR7 H;  4DR3 H;  1J5K A;  4GKK H;  1UG8 A;  1K1G A;  4JI2 H;  3OSS D;  4DR1 H;  1WVN A;  1HNZ H;  3FAU A;  5JEA G;  4B8T A;  4JI0 H;  4DUY H;  4JV5 H;  4E9J A;  4G08 A;  4OD6 A;  2OPU A;  3J81 W;  2K1H A;  3UOE A;  4LF8 H;  3U1K A;  2CTJ A;  3JAM W;  4DV0 H;  2YQR A;  2D9I A;  4OCH A;  2A1S A;  4DV4 H;  3VKE A;  3SB1 A;  2PQU A;  2MJH A;  1WHR A;  2X06 A;  4NXM H;  1S03 G;  4GKJ H;  2JA9 A;  2UUB H;  4EC5 A;  2ZM6 H;  4DV1 H;  1S20 A;  4FJS A;  4DV2 H;  2CWF A;  4OO1 G;  3J7A K;  4AM3 A;  1X4N A;  4BA2 I;  1X9Z A;  1IBM H;  1DTJ A;  5FLX W;  4LFC H;  1V8C A;  4LF7 H;  2CPQ A;  4LF4 H;  4DV3 H;  3KDG A;  4PDB A;  2JE6 I;  3T1Y H;  4H8A A;  3AEV B;  1WE8 A;  3KDK A;  4FJU A;  5BR8 H;  2VKC A;  1N32 H;  1I6U A;  2JZX A;  1TUA A;  3V69 A;  5K36 G;  2CWH A;  2LTM A;  1HR0 H;  2CTE A;  4LFB H;  2P2R A;  1NXU A;  2JVZ A;  2BL5 A;  3RF2 A;  2PT7 G;  2FFM A; 
#chains in the Genus database with same CATH homology
 4DR4 H;  1N33 H;  4DUZ H;  4LFA H;  3T1H H;  2VQF H;  1I94 H;  1XNR H;  2Y3M A;  1AN7 A;  4NZT M;  1J5E H;  5LMN H;  1IBK H;  3J80 W;  4JYA H;  2UUA H;  3EZJ A;  3GR5 A;  4X65 H;  4JI4 H;  4DR5 H;  2VQE H;  1N34 H;  1IBL H;  4NZR M;  1XMQ H;  4K0K H;  4KHP H;  4JI7 H;  5IWA H;  4LF6 H;  5DT9 A;  2HHH H;  1FJG H;  4OX9 H;  4B3M H;  1XNQ H;  5LMU H;  1N36 H;  2E5L H;  4DV5 H;  4YHH H;  4DV6 H;  4B3T H;  4JI6 H;  4NXN H;  4JI5 H;  4X66 H;  2UUC H;  4LF9 H;  3GAB A;  3OET A;  5LL6 b;  3NCV A;  4YY3 H;  2FPH X;  1SEI A;  1F0X A;  5IT9 W;  2UXC H;  4DR2 H;  4B3R H;  4X64 H;  2UU9 H;  4B3S H;  2F4V H;  2UXB H;  2ZQE A;  1XMO H;  4JI3 H;  4AQY H;  2O4C A;  3QD7 X;  5A2Q W;  2UXD H;  4JI1 H;  4DR6 H;  4LF5 H;  1FKA H;  4DV7 H;  1HNX H;  4JI8 H;  4B8C D;  4X62 H;  2LF0 A;  1ODH A;  1HNW H;  4DR7 H;  4DR3 H;  4GKK H;  4JI2 H;  3OSS D;  4DR1 H;  1HNZ H;  4JI0 H;  3FAU A;  4JV5 H;  4DUY H;  4E9J A;  4G08 A;  4OD6 A;  3J81 W;  4LF8 H;  3JAM W;  4DV0 H;  4OCH A;  2D9I A;  4DV4 H;  3SB1 A;  4NXM H;  1S03 G;  4GKJ H;  2UUB H;  4EC5 A;  2ZM6 H;  4DV1 H;  4DV2 H;  3J7A K;  1X9Z A;  1IBM H;  5FLX W;  4LFC H;  4LF7 H;  4LF4 H;  4DV3 H;  3KDG A;  4PDB A;  3T1Y H;  3KDK A;  5BR8 H;  2VKC A;  1N32 H;  1I6U A;  1HR0 H;  4LFB H;  3OTO H;  3RF2 A;  2PT7 G; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...