3QF6A

Neutron structure of type-iii antifreeze protein allows the reconstruction of afp-ice interface
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
65
structure length
65
Chain Sequence
NQASVVANQLIPINTALTLVMMRSEVVTPVGIPADDIPRLVSMQVNRAVPLGTTLMPDMVKGYPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords Type-3 ice-structuring protein HPLC 12
publication title Neutron structure of type-III antifreeze protein allows the reconstruction of AFP-ice interface.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 16
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2011-01-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 3qf6A00
4UR4A 8MSIA 5MSIA 8AMEA 1B7JA 2LX3A 4MSIA 2LX2A 2ZDRA 1JABA 1UCSA 1MSIA 3NLAA 6MSIA 7AMEA 1C89A 3AMEA 1MSJA 1B7KA 3MSIA 7MSIA 4AMEA 1WVOA 3RDNA 1C8AA 2MSJA 1AMEA 2AMEA 2JIAA 1HG7A 2WQPA 1OPSA 3CM4A 3FRNA 1XUZA 4IPIA 1GZIA 1VLIA 9AMEA 4NY6A 1KDFA 1XUUA 2SPGA 3G8RA 4UR6A 6AMEA 9MSIA 2MSIA 1KDEA 1EKLA 4IPJA 3QF6A 1B7IA
chains in the Genus database with same CATH superfamily
4UR4A 8MSIA 5MSIA 8AMEA 1B7JA 2LX3A 4MSIA 2LX2A 2ZDRA 1JABA 1UCSA 1MSIA 3NLAA 6MSIA 7AMEA 1C89A 3AMEA 1MSJA 1B7KA 3MSIA 7MSIA 4AMEA 1WVOA 3RDNA 1C8AA 2MSJA 3K3SA 1AMEA 2AMEA 2JIAA 1HG7A 2WQPA 1OPSA 3CM4A 3FRNA 1XUZA 3LAZA 4IPIA 1GZIA 1VLIA 9AMEA 4NY6A 1KDFA 1XUUA 2SPGA 3G8RA 4UR6A 6AMEA 9MSIA 2MSIA 1KDEA 1EKLA 4IPJA 3QF6A 1B7IA
chains in the Genus database with same CATH topology
4UR4A 8MSIA 5MSIA 8AMEA 1B7JA 2LX3A 4MSIA 2LX2A 2ZDRA 1JABA 1UCSA 1MSIA 3NLAA 6MSIA 7AMEA 1C89A 3AMEA 1MSJA 1B7KA 3MSIA 7MSIA 4AMEA 1WVOA 3RDNA 1C8AA 2MSJA 1AMEA 2AMEA 2JIAA 1HG7A 2WQPA 1OPSA 3CM4A 3FRNA 1XUZA 4IPIA 1GZIA 1VLIA 9AMEA 4NY6A 1KDFA 1XUUA 2SPGA 3G8RA 4UR6A 6AMEA 9MSIA 2MSIA 1KDEA 1EKLA 4IPJA 3QF6A 1B7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UR4 A;  8MSI A;  5MSI A;  8AME A;  1B7J A;  2LX3 A;  4MSI A;  2LX2 A;  2ZDR A;  1JAB A;  1UCS A;  1MSI A;  3NLA A;  6MSI A;  7AME A;  1C89 A;  3AME A;  1MSJ A;  1B7K A;  3MSI A;  7MSI A;  4AME A;  1WVO A;  3RDN A;  1C8A A;  2MSJ A;  1AME A;  2AME A;  2JIA A;  1HG7 A;  2WQP A;  1OPS A;  3CM4 A;  3FRN A;  1XUZ A;  4IPI A;  1GZI A;  1VLI A;  9AME A;  4NY6 A;  1KDF A;  1XUU A;  2SPG A;  3G8R A;  4UR6 A;  6AME A;  9MSI A;  2MSI A;  1KDE A;  1EKL A;  4IPJ A;  3QF6 A;  1B7I A; 
#chains in the Genus database with same CATH topology
 4UR4 A;  8MSI A;  5MSI A;  8AME A;  1B7J A;  2LX3 A;  4MSI A;  2LX2 A;  2ZDR A;  1JAB A;  1UCS A;  1MSI A;  3NLA A;  6MSI A;  7AME A;  1C89 A;  3AME A;  1MSJ A;  1B7K A;  3MSI A;  7MSI A;  4AME A;  1WVO A;  3RDN A;  1C8A A;  2MSJ A;  3K3S A;  1AME A;  2AME A;  2JIA A;  1HG7 A;  2WQP A;  1OPS A;  3CM4 A;  3FRN A;  1XUZ A;  3LAZ A;  4IPI A;  1GZI A;  1VLI A;  9AME A;  4NY6 A;  1KDF A;  1XUU A;  2SPG A;  3G8R A;  4UR6 A;  6AME A;  9MSI A;  2MSI A;  1KDE A;  1EKL A;  4IPJ A;  3QF6 A;  1B7I A; 
#chains in the Genus database with same CATH homology
 4UR4 A;  8MSI A;  5MSI A;  8AME A;  1B7J A;  2LX3 A;  4MSI A;  2LX2 A;  2ZDR A;  1JAB A;  1UCS A;  1MSI A;  3NLA A;  6MSI A;  7AME A;  1C89 A;  3AME A;  1MSJ A;  1B7K A;  3MSI A;  7MSI A;  4AME A;  1WVO A;  3RDN A;  1C8A A;  2MSJ A;  1AME A;  2AME A;  2JIA A;  1HG7 A;  2WQP A;  1OPS A;  3CM4 A;  3FRN A;  1XUZ A;  4IPI A;  1GZI A;  1VLI A;  9AME A;  4NY6 A;  1KDF A;  1XUU A;  2SPG A;  3G8R A;  4UR6 A;  6AME A;  9MSI A;  2MSI A;  1KDE A;  1EKL A;  4IPJ A;  3QF6 A;  1B7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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