3QFIA

X-ray crystal structure of transcriptional regulator (ef0465) from enterococcus faecalis, northeast structural genomics consortium target efr190
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
276
structure length
261
Chain Sequence
TANIDAQEPFSVLLMGIDTGDDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLNHAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTGITVPAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDYRKILDAVEANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLRKQLGLKEHASEREKDLAFYNQFSYAVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystal structure of transcriptional regulator (EF0465) from Enterococcus faecalis, Northeast Structural Genomics Consortium Target EfR190
rcsb
source organism Enterococcus faecalis
molecule tags Transcription regulator
molecule keywords Transcriptional regulator
total genus 76
structure length 261
sequence length 276
ec nomenclature
pdb deposition date 2011-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3qfiA00
3QFIA 3TFLA 4OBMA 3OKZA 3TEPA 3PE5A 4DE8A 2XXPA 3MEJA 3OWQA 4DE9A 3NROA 2XXQA 3NXHA 3TELA
chains in the Genus database with same CATH superfamily
3M9LA 3LFPA 3CROL 5DT2A 1ZZ6A 1R69A 3JXBC 4FN3A 4PU4C 1CJGA 1BDHA 1ZVVA 3JXDL 3UWPA 3DNVB 1LCDA 1ZZ8A 2IVBA 2IVQA 1U2ZA 4I6UA 4JCYA 3GZCA 3QQ6A 4Z5DA 2PXDA 2PUEA 2PXTA 3OP9A 4WVLA 1LCCA 4Y42A 1PERL 4X4FA 1NEQA 2PXBA 4I6RA 1YSEA 1ZZCA 2EBYA 2WIUB 3OKZA 2HCSA 1LMB3 4O8BA 2PIJA 5JUWA 3GZDC 3U3WA 4YARA 4JCXA 2PXEA 5GAHi 4Z58A 2IUOA 2MQKA 1S7EA 2GRMA 4EKIA 2XJ3A 3KZ3A 1IC8A 1L1MA 1PRVA 3S8QA 1UXCA 1HQ1A 2L8NA 2AXUA 2BNMA 3HZIB 4HRAA 3OMTA 3SCHA 3NZLA 3SX0A 3TFLA 1UTXA 1ZZ7A 1HF0A 1WH8A 1QB2A 3FMYA 4DE9A 3O9XA 3BDNA 5DTQA 2L1PA 2PUCA 1POUA 3KXAA 3IVPA 5DTRA 2WUSR 2XI8A 2KZ8A 3OQNA 2LYLA 4IVZA 1AU7A 1WIZA 2XXQA 3ZKCA 1DW9A 4FBIA 3UFDA 2ICTA 2PXLA 2CSFA 4X4GA 3GN5A 4Q2JA 2KEJA 2D5VA 3LQXA 4GHJA 2HCNA 2LYSA 2O38A 1R63A 3H5TA 1PNRA 3NXHA 3BD1A 2GZUA 4YBAA 1RZRD 2XXAA 4MCTA 2LNMA 5A7LA 3ME5A 2BJCA 5DSXA 3G5GA 2H8RA 3G7DA 2VEOA 2XSDC 1GT0C 3QOWA 3NDBB 2PPXA 2OR1L 1DULA 1VPWA 5DRTA 4ER5A 3FYMA 3EUSA 4X4EA 4YG1A 1JWLA 4X4BA 4ER7A 3F52A 1QZXA 3SCGA 1NW3A 2JCGA 4GQMA 4ER0A 3F6WA 3MEJA 3A9YA 2LLVA 2FFHA 1WH6A 4X4CA 1RIOA 3FYAA 2A6CA 1RZRA 1NERA 2AW6A 2PUAA 4X4DA 4JQDA 2PXPA 4IA8A 4EK9A 1LQCA 2LYRA 4YG4A 1LLIA 1O4XA 3TELA 3VWSA 5GAGi 5K98B 4Z5CA 3GZDA 2FJRA 3CECA 2YBDA 1Y9QA 4EZIA 2O49A 4DE8A 3ZHIA 2JVLA 3QWGA 4YG7B 2GRLA 4X4HA 2BNOA 2XXPA 3B7HA 3F51A 2HFZA 1PRUA 4X4IA 4IWRA 2HSGA 3BS3A 2R1JL 2KEIA 1JFTA 2PUDA 1MFQC 2M4HA 2EWTA 1ZS4A 2LYJA 3OQMA 4ER3A 4PU3C 2EF8A 4PU7A 1QP7A 2V3CC 1BDIA 3QFIA 4PU8A 4NDWA 2KEKA 3D1NI 2B5AA 3OWQA 2AXVA 3L1PA 4J1XA 3A9ZA 1QQBA 1CQTA 4OB4A 3DM5A 3R1FA 4I8TA 2BNNA 3ZHMA 3VK0A 3GUUA 1PRAA 2LYPA 1X57A 3R09A 3G0TA 4EKGA 1ZAYA 1ZZ9A 1WETA 4I6TA 2MXDA 2L49A 5DRYA 4MCXA 3GN5B 2MEZA 2OFYA 1XWRA 1OSLA 4Z59A 2LCVA 2IVGA 2XIUA 3QF3A 2HINA 1SQ8A 3SR4A 1QQAA 1RZSA 3LISA 3GBFA 1RPEL 2IV1A 2JQEA 1ZUGA 4OBMA 2PXVA 2PUBA 2LLWA 2XCJA 2PXFA 2CROA 2PUFA 3PXPA 2LYQA 4J1WA 1EFAA 3KJXA 3SCFA 3OQOA 1Y7YA 3NROA 4Z5HA 2KPJA 2PUGA 2ODRD 3KL4A 1ZPQA 1JFSA 2O4AA 1DWKA 1ADRA 3PE5A 1E3OC 3CLCA 1QP4A 1X2LA 3QOXA 4ER6A 2J7UA 3RZZA 2ICPA 2PXKA 2PXUA 3A9XA 3TRBA 3ZPXA 2LYKA 1ZZBA 5DTMA 2AXZA 3TEPA 2PXQA 2PE5A 2AUWA 3QYXA 2AWIA 1JH9A 1QPZA 1UXDA 1OCTC 4F8DA 3MLFA 2J7WA 1B0NA 4EQZA 3JXCL 2IU7A 1QP0A 2R63A
chains in the Genus database with same CATH topology
3A9YA 3A9XA 4OBMA 3M9LA 4HRAA 5DT2A 2XXPA 3ZPXA 3GZCA 5DRTA 2LLWA 4ER5A 2XXQA 2LLVA 2HFZA 3NXHA 5DTMA 3TELA 3NZLA 3SX0A 3QFIA 3TFLA 3VWSA 3TEPA 3PE5A 3GUUA 3GZDA 2LNMA 4EKIA 2YBDA 4WVLA 4EZIA 4ER7A 3ME5A 3R09A 3G0TA 4EKGA 5DSXA 4Q2JA 4DE8A 3OWQA 4DE9A 3SR4A 3OKZA 3A9ZA 3QOXA 1NW3A 5DTQA 2HCSA 2L1PA 3UWPA 4ER6A 2J7WA 2M4HA 5JUWA 3GZDC 2VEOA 2MXDA 4ER0A 2HCNA 2J7UA 3MEJA 3QOWA 3NROA 5DRYA 5DTRA 1U2ZA 4EQZA 4EK9A 4ER3A 2ODRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QFI A;  3TFL A;  4OBM A;  3OKZ A;  3TEP A;  3PE5 A;  4DE8 A;  2XXP A;  3MEJ A;  3OWQ A;  4DE9 A;  3NRO A;  2XXQ A;  3NXH A;  3TEL A; 
#chains in the Genus database with same CATH topology
 3M9L A;  3LFP A;  3CRO L;  5DT2 A;  1ZZ6 A;  1R69 A;  3JXB C;  4FN3 A;  4PU4 C;  1CJG A;  1BDH A;  1ZVV A;  3JXD L;  3UWP A;  3DNV B;  1LCD A;  1ZZ8 A;  2IVB A;  2IVQ A;  1U2Z A;  4I6U A;  4JCY A;  3GZC A;  3QQ6 A;  4Z5D A;  2PXD A;  2PUE A;  2PXT A;  3OP9 A;  4WVL A;  1LCC A;  4Y42 A;  1PER L;  4X4F A;  1NEQ A;  2PXB A;  4I6R A;  1YSE A;  1ZZC A;  2EBY A;  2WIU B;  3OKZ A;  2HCS A;  1LMB 3;  4O8B A;  2PIJ A;  5JUW A;  3GZD C;  3U3W A;  4YAR A;  4JCX A;  2PXE A;  5GAH i;  4Z58 A;  2IUO A;  2MQK A;  1S7E A;  2GRM A;  4EKI A;  2XJ3 A;  3KZ3 A;  1IC8 A;  1L1M A;  1PRV A;  3S8Q A;  1UXC A;  1HQ1 A;  2L8N A;  2AXU A;  2BNM A;  3HZI B;  4HRA A;  3OMT A;  3SCH A;  3NZL A;  3SX0 A;  3TFL A;  1UTX A;  1ZZ7 A;  1HF0 A;  1WH8 A;  1QB2 A;  3FMY A;  4DE9 A;  3O9X A;  3BDN A;  5DTQ A;  2L1P A;  2PUC A;  1POU A;  3KXA A;  3IVP A;  5DTR A;  2WUS R;  2XI8 A;  2KZ8 A;  3OQN A;  2LYL A;  4IVZ A;  1AU7 A;  1WIZ A;  2XXQ A;  3ZKC A;  1DW9 A;  4FBI A;  3UFD A;  2ICT A;  2PXL A;  2CSF A;  4X4G A;  3GN5 A;  4Q2J A;  2KEJ A;  2D5V A;  3LQX A;  4GHJ A;  2HCN A;  2LYS A;  2O38 A;  1R63 A;  3H5T A;  1PNR A;  3NXH A;  3BD1 A;  2GZU A;  4YBA A;  1RZR D;  2XXA A;  4MCT A;  2LNM A;  5A7L A;  3ME5 A;  2BJC A;  5DSX A;  3G5G A;  2H8R A;  3G7D A;  2VEO A;  2XSD C;  1GT0 C;  3QOW A;  3NDB B;  2PPX A;  2OR1 L;  1DUL A;  1VPW A;  5DRT A;  4ER5 A;  3FYM A;  3EUS A;  4X4E A;  4YG1 A;  1JWL A;  4X4B A;  4ER7 A;  3F52 A;  1QZX A;  3SCG A;  1NW3 A;  2JCG A;  4GQM A;  4ER0 A;  3F6W A;  3MEJ A;  3A9Y A;  2LLV A;  2FFH A;  1WH6 A;  4X4C A;  1RIO A;  3FYA A;  2A6C A;  1RZR A;  1NER A;  2AW6 A;  2PUA A;  4X4D A;  4JQD A;  2PXP A;  4IA8 A;  4EK9 A;  1LQC A;  2LYR A;  4YG4 A;  1LLI A;  1O4X A;  3TEL A;  3VWS A;  5GAG i;  5K98 B;  4Z5C A;  3GZD A;  2FJR A;  3CEC A;  2YBD A;  1Y9Q A;  4EZI A;  2O49 A;  4DE8 A;  3ZHI A;  2JVL A;  3QWG A;  4YG7 B;  2GRL A;  4X4H A;  2BNO A;  2XXP A;  3B7H A;  3F51 A;  2HFZ A;  1PRU A;  4X4I A;  4IWR A;  2HSG A;  3BS3 A;  2R1J L;  2KEI A;  1JFT A;  2PUD A;  1MFQ C;  2M4H A;  2EWT A;  1ZS4 A;  2LYJ A;  3OQM A;  4ER3 A;  4PU3 C;  2EF8 A;  4PU7 A;  1QP7 A;  2V3C C;  1BDI A;  3QFI A;  4PU8 A;  4NDW A;  2KEK A;  3D1N I;  2B5A A;  3OWQ A;  2AXV A;  3L1P A;  4J1X A;  3A9Z A;  1QQB A;  1CQT A;  4OB4 A;  3DM5 A;  3R1F A;  4I8T A;  2BNN A;  3ZHM A;  3VK0 A;  3GUU A;  1PRA A;  2LYP A;  1X57 A;  3R09 A;  3G0T A;  4EKG A;  1ZAY A;  1ZZ9 A;  1WET A;  4I6T A;  2MXD A;  2L49 A;  5DRY A;  4MCX A;  3GN5 B;  2MEZ A;  2OFY A;  1XWR A;  1OSL A;  4Z59 A;  2LCV A;  2IVG A;  2XIU A;  3QF3 A;  2HIN A;  1SQ8 A;  3SR4 A;  1QQA A;  1RZS A;  3LIS A;  3GBF A;  1RPE L;  2IV1 A;  2JQE A;  1ZUG A;  4OBM A;  2PXV A;  2PUB A;  2LLW A;  2XCJ A;  2PXF A;  2CRO A;  2PUF A;  3PXP A;  2LYQ A;  4J1W A;  1EFA A;  3KJX A;  3SCF A;  3OQO A;  1Y7Y A;  3NRO A;  4Z5H A;  2KPJ A;  2PUG A;  2ODR D;  3KL4 A;  1ZPQ A;  1JFS A;  2O4A A;  1DWK A;  1ADR A;  3PE5 A;  1E3O C;  3CLC A;  1QP4 A;  1X2L A;  3QOX A;  4ER6 A;  2J7U A;  3RZZ A;  2ICP A;  2PXK A;  2PXU A;  3A9X A;  3TRB A;  3ZPX A;  2LYK A;  1ZZB A;  5DTM A;  2AXZ A;  3TEP A;  2PXQ A;  2PE5 A;  2AUW A;  3QYX A;  2AWI A;  1JH9 A;  1QPZ A;  1UXD A;  1OCT C;  4F8D A;  3MLF A;  2J7W A;  1B0N A;  4EQZ A;  3JXC L;  2IU7 A;  1QP0 A;  2R63 A; 
#chains in the Genus database with same CATH homology
 3A9Y A;  3A9X A;  4OBM A;  3M9L A;  4HRA A;  5DT2 A;  2XXP A;  3ZPX A;  3GZC A;  5DRT A;  2LLW A;  4ER5 A;  2XXQ A;  2LLV A;  2HFZ A;  3NXH A;  5DTM A;  3TEL A;  3NZL A;  3SX0 A;  3QFI A;  3TFL A;  3VWS A;  3TEP A;  3PE5 A;  3GUU A;  3GZD A;  2LNM A;  4EKI A;  2YBD A;  4WVL A;  4EZI A;  4ER7 A;  3ME5 A;  3R09 A;  3G0T A;  4EKG A;  5DSX A;  4Q2J A;  4DE8 A;  3OWQ A;  4DE9 A;  3SR4 A;  3OKZ A;  3A9Z A;  3QOX A;  1NW3 A;  5DTQ A;  2HCS A;  2L1P A;  3UWP A;  4ER6 A;  2J7W A;  2M4H A;  5JUW A;  3GZD C;  2VEO A;  2MXD A;  4ER0 A;  2HCN A;  2J7U A;  3MEJ A;  3QOW A;  3NRO A;  5DRY A;  5DTR A;  1U2Z A;  4EQZ A;  4EK9 A;  4ER3 A;  2ODR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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