3QFKA

2.05 angstrom crystal structure of putative 5'-nucleotidase from staphylococcus aureus in complex with alpha-ketoglutarate
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
510
structure length
510
Chain Sequence
SNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRMAFDFGTLGNHEFNYGLPYLKDTLRRLNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHIQSLTFHSAFEILQQYLPEMKRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITGHQHRQIAERFKQTAVIQPGTRGTTVGRVVLSTDEYENLSVESCELLPVIDDSTFTIDEDDQHLRKQLEDWLDYEITTLPYDMTINHAFEARVAPHPFTNFMNYALLEKSDADVACTALFDSASGFKQVVTMRDVINNYPFPNTFKVLAVSGAKLKEAIERSAEYFDVKNDEVSVSADFLEPKPQHFNYDIYGGVSYTIHVGRPKGQRVSNMMIQGHAVDLKQTYTICVNNYRAVGGGQYDMYIDAPVVKDIQVEGAQLLIDFLSNNNLMRIPQVVDFKVEK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title 2.05 Angstrom Crystal Structure of Putative 5'-Nucleotidase from Staphylococcus aureus in complex with alpha-ketoglutarate.
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Hydrolase
molecule keywords Uncharacterized protein
total genus 157
structure length 510
sequence length 510
ec nomenclature
pdb deposition date 2011-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3qfkA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 3qfkA02
4ZX2A 2IE3C 2Z1AA 3DW8C 4LTYA 2Q8UA 4H2IA 3H62B 3KBPA 3H67A 1II7A 4UWQA 4H2GA 1T71A 3QFNA 4I5NC 3H60A 1U32A 2IAEC 3RL3A 1XZWA 2QFPA 3IB8A 3IVDA 4H1SA 2NPPC 4V0XA 3DSCA 3H64A 3PSOA 1JK7A 1OIDA 2WDDA 3EGHA 4O4KA 1S3MA 4V0VA 3E7AA 1QHWA 4FCXA 1UTEA 5JPEA 3QFKA 4KBPA 4MP0A 2WDCA 1OI8A 4V0WA 4FBKA 1HPUA 2BQ8X 2NYMC 2R17A 2A22A 2YVTA 3THNA 4UT2A 2O8AA 1W24A 1S95A 3N5UA 4JA9A 5C1VA 4F0ZA 3H63A 2CV9A 4LACC 2HYOA 3P71C 2BDXA 2HYPA 4J6OA 4O43A 5J28A 1Z2WA 4WWLA 4B2OA 4ORAA 1Z2XA 1MF8A 4DSYA 1OIEA 4UT3B 4JA7A 4DHLA 2XMOA 4IYPC 2WDEA 2IE4C 3EGGA 3C9FA 1S70A 1T70A 3GVEA 3QFMA 1KBPA 5INBA 4DT2A 3H68A 2NXFA 3LL8A 1IT6A 3HVQA 3FGAC 4MOYA 4UT3A 3H69A 1WAO1 3E7BA 1WARA 4H2FA 1QFCA 1USHA 3AV0A 3TGHA 5IOHA 2BCDA 4TUIA 3C5WC 5DNYA 3ZU0A 1S3NA 2USHA 2WDFA 4ORBA 4Q7FA 5JJTA 4M0VA 3JYFA 2AHDA 4MOVA 1FJMA 2KKNA 3RQZA 3IVEA 2HY1A 3V4YA 4XPNA 2Z06A 2QFRA 3ICFA 3THOB 4HD0A 4TUGA 3DSDA 1SU1A 1G5BA 1S8EA 4ZVZA 3RL4A 4H2BA 4O24A 4YKEA 2NYLC 2Z72A 3PSNA 4FBWA 4H1YP 1HP1A 1HO5A 3K7WC 5GTUA 2P6BA 5HPEA 3QFOA 3AUZA 1NNWA 3RL5A 2O8GA 3T1IA 4NZVA 2ZBMA 1M63A 5JPFA 5EQVA 5F3WA 2JOGA 1TCOA 3K7VC 4FBQA 3CK2A 3H61A 4I5LC 1XM7A 4G9JA 4KKZA 5B8IA 1UF3A 2DFJA 1AUIA 3IB7A 3H66A 2GJUA 4IL1A 4ORCA 3ZTVA 4LU9A 2QJCA 1V73A 3QG5C 4O5GA 1S3LA 4OR9A
chains in the Genus database with same CATH superfamily
3E0JA 4ZX2A 2IE3C 2Z1AA 3DW8C 4LTYA 2Q8UA 4H2IA 3H62B 3KBPA 3H67A 1II7A 4UWQA 4H2GA 1T71A 3QFNA 4I5NC 3H60A 1U32A 2IAEC 3RL3A 1XZWA 2QFPA 3IB8A 3IVDA 4H1SA 2NPPC 4V0XA 3DSCA 3H64A 3PSOA 1JK7A 1OIDA 2WDDA 3EGHA 4O4KA 1S3MA 4V0VA 3E7AA 2ZOAA 1QHWA 4FCXA 1UTEA 5JPEA 3QFKA 4KBPA 4MP0A 2WDCA 1OI8A 4V0WA 4FBKA 1HPUA 2BQ8X 2NYMC 2R17A 2A22A 2YVTA 3THNA 4UT2A 2O8AA 1W24A 1S95A 3N5UA 4JA9A 5C1VA 4F0ZA 3H63A 2CV9A 4LACC 2HYOA 3P71C 2BDXA 2HYPA 4J6OA 4O43A 5J28A 1Z2WA 4WWLA 2DXLA 4B2OA 4ORAA 1Z2XA 1MF8A 4DSYA 1OIEA 4UT3B 4JA7A 4DHLA 2XMOA 2DXNA 4IYPC 2WDEA 2IE4C 3EGGA 3C9FA 1S70A 1T70A 3GVEA 3QFMA 1KBPA 3D03A 5INBA 4DT2A 3H68A 2NXFA 3LL8A 1IT6A 3HVQA 3FGAC 4MOYA 4UT3A 3H69A 1WAO1 3E7BA 1WARA 4H2FA 1QFCA 1USHA 3AV0A 3TGHA 5IOHA 2BCDA 4TUIA 3C5WC 5DNYA 3ZU0A 1S3NA 2USHA 2WDFA 4ORBA 4Q7FA 5JJTA 4M0VA 3JYFA 2AHDA 4MOVA 1FJMA 2KKNA 3RQZA 3IVEA 2HY1A 3V4YA 4XPNA 2Z06A 2QFRA 3ICFA 3THOB 4HD0A 4TUGA 3DSDA 3FLOA 1SU1A 1G5BA 1S8EA 4ZVZA 3RL4A 4H2BA 4O24A 4YKEA 2NYLC 2Z72A 3PSNA 4FBWA 4H1YP 1HP1A 1HO5A 3K7WC 5GTUA 2P6BA 5HPEA 3QFOA 3AUZA 1NNWA 3RL5A 2YEQA 2O8GA 3T1IA 4NZVA 2ZBMA 1M63A 5JPFA 5EQVA 5F3WA 2JOGA 1TCOA 3K7VC 4FBQA 3CK2A 2ZO9B 3H61A 4I5LC 1XM7A 4G9JA 4KKZA 5B8IA 1UF3A 2DFJA 1AUIA 3IB7A 3H66A 2GJUA 4IL1A 4ORCA 3ZTVA 4LU9A 2QJCA 1V73A 3QG5C 4O5GA 1S3LA 4OR9A
chains in the Genus database with same CATH topology
3E0JA 4ZX2A 2IE3C 2Z1AA 3DW8C 4LTYA 2Q8UA 4H2IA 3H62B 3KBPA 3H67A 1II7A 4UWQA 4H2GA 1T71A 3QFNA 4I5NC 3H60A 1U32A 2IAEC 3RL3A 1XZWA 2QFPA 3IB8A 3IVDA 4H1SA 2NPPC 4V0XA 3DSCA 3H64A 3PSOA 1JK7A 1OIDA 2WDDA 3EGHA 4O4KA 1S3MA 4V0VA 3E7AA 2ZOAA 1QHWA 4FCXA 1UTEA 5JPEA 3QFKA 4KBPA 4MP0A 2WDCA 1OI8A 4V0WA 4FBKA 1HPUA 2BQ8X 2NYMC 2R17A 2A22A 2YVTA 3THNA 4UT2A 2O8AA 1W24A 1S95A 3N5UA 4JA9A 5C1VA 4F0ZA 3H63A 2CV9A 4LACC 2HYOA 3P71C 2BDXA 2HYPA 4J6OA 4O43A 5J28A 1Z2WA 4WWLA 2DXLA 4B2OA 4ORAA 1Z2XA 1MF8A 4DSYA 1OIEA 4UT3B 4JA7A 4DHLA 2XMOA 2DXNA 4IYPC 2WDEA 2IE4C 3EGGA 3C9FA 1S70A 1T70A 3GVEA 3QFMA 1KBPA 3D03A 5INBA 4DT2A 3H68A 2NXFA 3LL8A 1IT6A 3HVQA 3FGAC 4MOYA 4UT3A 3H69A 1WAO1 3E7BA 1WARA 4H2FA 1QFCA 1USHA 3AV0A 3TGHA 5IOHA 2BCDA 4TUIA 3C5WC 5DNYA 3ZU0A 1S3NA 2USHA 2WDFA 4ORBA 4Q7FA 5JJTA 4M0VA 3JYFA 2AHDA 4MOVA 1FJMA 2KKNA 3RQZA 3IVEA 2HY1A 3V4YA 4XPNA 2Z06A 2QFRA 3ICFA 3THOB 4HD0A 4TUGA 3DSDA 3FLOA 1SU1A 1G5BA 1S8EA 4ZVZA 3RL4A 4H2BA 4O24A 4YKEA 2NYLC 2Z72A 3PSNA 4FBWA 4H1YP 1HP1A 1HO5A 3K7WC 5GTUA 2P6BA 5HPEA 3QFOA 3AUZA 1NNWA 3RL5A 2YEQA 2O8GA 3T1IA 4NZVA 2ZBMA 1M63A 5JPFA 5EQVA 5F3WA 2JOGA 1TCOA 3K7VC 4FBQA 3CK2A 2ZO9B 3H61A 4I5LC 1XM7A 4G9JA 4KKZA 5B8IA 1UF3A 2DFJA 1AUIA 3IB7A 3H66A 2GJUA 4IL1A 4ORCA 3ZTVA 4LU9A 2QJCA 1V73A 3QG5C 4O5GA 1S3LA 4OR9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZX2 A;  2IE3 C;  2Z1A A;  3DW8 C;  4LTY A;  2Q8U A;  4H2I A;  3H62 B;  3KBP A;  3H67 A;  1II7 A;  4UWQ A;  4H2G A;  1T71 A;  3QFN A;  4I5N C;  3H60 A;  1U32 A;  2IAE C;  3RL3 A;  1XZW A;  2QFP A;  3IB8 A;  3IVD A;  4H1S A;  2NPP C;  4V0X A;  3DSC A;  3H64 A;  3PSO A;  1JK7 A;  1OID A;  2WDD A;  3EGH A;  4O4K A;  1S3M A;  4V0V A;  3E7A A;  1QHW A;  4FCX A;  1UTE A;  5JPE A;  3QFK A;  4KBP A;  4MP0 A;  2WDC A;  1OI8 A;  4V0W A;  4FBK A;  1HPU A;  2BQ8 X;  2NYM C;  2R17 A;  2A22 A;  2YVT A;  3THN A;  4UT2 A;  2O8A A;  1W24 A;  1S95 A;  3N5U A;  4JA9 A;  5C1V A;  4F0Z A;  3H63 A;  2CV9 A;  4LAC C;  2HYO A;  3P71 C;  2BDX A;  2HYP A;  4J6O A;  4O43 A;  5J28 A;  1Z2W A;  4WWL A;  4B2O A;  4ORA A;  1Z2X A;  1MF8 A;  4DSY A;  1OIE A;  4UT3 B;  4JA7 A;  4DHL A;  2XMO A;  4IYP C;  2WDE A;  2IE4 C;  3EGG A;  3C9F A;  1S70 A;  1T70 A;  3GVE A;  3QFM A;  1KBP A;  5INB A;  4DT2 A;  3H68 A;  2NXF A;  3LL8 A;  1IT6 A;  3HVQ A;  3FGA C;  4MOY A;  4UT3 A;  3H69 A;  1WAO 1;  3E7B A;  1WAR A;  4H2F A;  1QFC A;  1USH A;  3AV0 A;  3TGH A;  5IOH A;  2BCD A;  4TUI A;  3C5W C;  5DNY A;  3ZU0 A;  1S3N A;  2USH A;  2WDF A;  4ORB A;  4Q7F A;  5JJT A;  4M0V A;  3JYF A;  2AHD A;  4MOV A;  1FJM A;  2KKN A;  3RQZ A;  3IVE A;  2HY1 A;  3V4Y A;  4XPN A;  2Z06 A;  2QFR A;  3ICF A;  3THO B;  4HD0 A;  4TUG A;  3DSD A;  1SU1 A;  1G5B A;  1S8E A;  4ZVZ A;  3RL4 A;  4H2B A;  4O24 A;  4YKE A;  2NYL C;  2Z72 A;  3PSN A;  4FBW A;  4H1Y P;  1HP1 A;  1HO5 A;  3K7W C;  5GTU A;  2P6B A;  5HPE A;  3QFO A;  3AUZ A;  1NNW A;  3RL5 A;  2O8G A;  3T1I A;  4NZV A;  2ZBM A;  1M63 A;  5JPF A;  5EQV A;  5F3W A;  2JOG A;  1TCO A;  3K7V C;  4FBQ A;  3CK2 A;  3H61 A;  4I5L C;  1XM7 A;  4G9J A;  4KKZ A;  5B8I A;  1UF3 A;  2DFJ A;  1AUI A;  3IB7 A;  3H66 A;  2GJU A;  4IL1 A;  4ORC A;  3ZTV A;  4LU9 A;  2QJC A;  1V73 A;  3QG5 C;  4O5G A;  1S3L A;  4OR9 A; 
#chains in the Genus database with same CATH topology
 3E0J A;  4ZX2 A;  2IE3 C;  2Z1A A;  3DW8 C;  4LTY A;  2Q8U A;  4H2I A;  3H62 B;  3KBP A;  3H67 A;  1II7 A;  4UWQ A;  4H2G A;  1T71 A;  3QFN A;  4I5N C;  3H60 A;  1U32 A;  2IAE C;  3RL3 A;  1XZW A;  2QFP A;  3IB8 A;  3IVD A;  4H1S A;  2NPP C;  4V0X A;  3DSC A;  3H64 A;  3PSO A;  1JK7 A;  1OID A;  2WDD A;  3EGH A;  4O4K A;  1S3M A;  4V0V A;  3E7A A;  2ZOA A;  1QHW A;  4FCX A;  1UTE A;  5JPE A;  3QFK A;  4KBP A;  4MP0 A;  2WDC A;  1OI8 A;  4V0W A;  4FBK A;  1HPU A;  2BQ8 X;  2NYM C;  2R17 A;  2A22 A;  2YVT A;  3THN A;  4UT2 A;  2O8A A;  1W24 A;  1S95 A;  3N5U A;  4JA9 A;  5C1V A;  4F0Z A;  3H63 A;  2CV9 A;  4LAC C;  2HYO A;  3P71 C;  2BDX A;  2HYP A;  4J6O A;  4O43 A;  5J28 A;  1Z2W A;  4WWL A;  2DXL A;  4B2O A;  4ORA A;  1Z2X A;  1MF8 A;  4DSY A;  1OIE A;  4UT3 B;  4JA7 A;  4DHL A;  2XMO A;  2DXN A;  4IYP C;  2WDE A;  2IE4 C;  3EGG A;  3C9F A;  1S70 A;  1T70 A;  3GVE A;  3QFM A;  1KBP A;  3D03 A;  5INB A;  4DT2 A;  3H68 A;  2NXF A;  3LL8 A;  1IT6 A;  3HVQ A;  3FGA C;  4MOY A;  4UT3 A;  3H69 A;  1WAO 1;  3E7B A;  1WAR A;  4H2F A;  1QFC A;  1USH A;  3AV0 A;  3TGH A;  5IOH A;  2BCD A;  4TUI A;  3C5W C;  5DNY A;  3ZU0 A;  1S3N A;  2USH A;  2WDF A;  4ORB A;  4Q7F A;  5JJT A;  4M0V A;  3JYF A;  2AHD A;  4MOV A;  1FJM A;  2KKN A;  3RQZ A;  3IVE A;  2HY1 A;  3V4Y A;  4XPN A;  2Z06 A;  2QFR A;  3ICF A;  3THO B;  4HD0 A;  4TUG A;  3DSD A;  3FLO A;  1SU1 A;  1G5B A;  1S8E A;  4ZVZ A;  3RL4 A;  4H2B A;  4O24 A;  4YKE A;  2NYL C;  2Z72 A;  3PSN A;  4FBW A;  4H1Y P;  1HP1 A;  1HO5 A;  3K7W C;  5GTU A;  2P6B A;  5HPE A;  3QFO A;  3AUZ A;  1NNW A;  3RL5 A;  2YEQ A;  2O8G A;  3T1I A;  4NZV A;  2ZBM A;  1M63 A;  5JPF A;  5EQV A;  5F3W A;  2JOG A;  1TCO A;  3K7V C;  4FBQ A;  3CK2 A;  2ZO9 B;  3H61 A;  4I5L C;  1XM7 A;  4G9J A;  4KKZ A;  5B8I A;  1UF3 A;  2DFJ A;  1AUI A;  3IB7 A;  3H66 A;  2GJU A;  4IL1 A;  4ORC A;  3ZTV A;  4LU9 A;  2QJC A;  1V73 A;  3QG5 C;  4O5G A;  1S3L A;  4OR9 A; 
#chains in the Genus database with same CATH homology
 3E0J A;  4ZX2 A;  2IE3 C;  2Z1A A;  3DW8 C;  4LTY A;  2Q8U A;  4H2I A;  3H62 B;  3KBP A;  3H67 A;  1II7 A;  4UWQ A;  4H2G A;  1T71 A;  3QFN A;  4I5N C;  3H60 A;  1U32 A;  2IAE C;  3RL3 A;  1XZW A;  2QFP A;  3IB8 A;  3IVD A;  4H1S A;  2NPP C;  4V0X A;  3DSC A;  3H64 A;  3PSO A;  1JK7 A;  1OID A;  2WDD A;  3EGH A;  4O4K A;  1S3M A;  4V0V A;  3E7A A;  2ZOA A;  1QHW A;  4FCX A;  1UTE A;  5JPE A;  3QFK A;  4KBP A;  4MP0 A;  2WDC A;  1OI8 A;  4V0W A;  4FBK A;  1HPU A;  2BQ8 X;  2NYM C;  2R17 A;  2A22 A;  2YVT A;  3THN A;  4UT2 A;  2O8A A;  1W24 A;  1S95 A;  3N5U A;  4JA9 A;  5C1V A;  4F0Z A;  3H63 A;  2CV9 A;  4LAC C;  2HYO A;  3P71 C;  2BDX A;  2HYP A;  4J6O A;  4O43 A;  5J28 A;  1Z2W A;  4WWL A;  2DXL A;  4B2O A;  4ORA A;  1Z2X A;  1MF8 A;  4DSY A;  1OIE A;  4UT3 B;  4JA7 A;  4DHL A;  2XMO A;  2DXN A;  4IYP C;  2WDE A;  2IE4 C;  3EGG A;  3C9F A;  1S70 A;  1T70 A;  3GVE A;  3QFM A;  1KBP A;  3D03 A;  5INB A;  4DT2 A;  3H68 A;  2NXF A;  3LL8 A;  1IT6 A;  3HVQ A;  3FGA C;  4MOY A;  4UT3 A;  3H69 A;  1WAO 1;  3E7B A;  1WAR A;  4H2F A;  1QFC A;  1USH A;  3AV0 A;  3TGH A;  5IOH A;  2BCD A;  4TUI A;  3C5W C;  5DNY A;  3ZU0 A;  1S3N A;  2USH A;  2WDF A;  4ORB A;  4Q7F A;  5JJT A;  4M0V A;  3JYF A;  2AHD A;  4MOV A;  1FJM A;  2KKN A;  3RQZ A;  3IVE A;  2HY1 A;  3V4Y A;  4XPN A;  2Z06 A;  2QFR A;  3ICF A;  3THO B;  4HD0 A;  4TUG A;  3DSD A;  3FLO A;  1SU1 A;  1G5B A;  1S8E A;  4ZVZ A;  3RL4 A;  4H2B A;  4O24 A;  4YKE A;  2NYL C;  2Z72 A;  3PSN A;  4FBW A;  4H1Y P;  1HP1 A;  1HO5 A;  3K7W C;  5GTU A;  2P6B A;  5HPE A;  3QFO A;  3AUZ A;  1NNW A;  3RL5 A;  2YEQ A;  2O8G A;  3T1I A;  4NZV A;  2ZBM A;  1M63 A;  5JPF A;  5EQV A;  5F3W A;  2JOG A;  1TCO A;  3K7V C;  4FBQ A;  3CK2 A;  2ZO9 B;  3H61 A;  4I5L C;  1XM7 A;  4G9J A;  4KKZ A;  5B8I A;  1UF3 A;  2DFJ A;  1AUI A;  3IB7 A;  3H66 A;  2GJU A;  4IL1 A;  4ORC A;  3ZTV A;  4LU9 A;  2QJC A;  1V73 A;  3QG5 C;  4O5G A;  1S3L A;  4OR9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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