3QMNA

Crystal structure of 4'-phosphopantetheinyl transferase acps from vibrio cholerae o1 biovar eltor
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
126
structure length
126
Chain Sequence
AMIVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAASKALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVENIHLSISDERHYAMATVILER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Holo-[acyl-carrier-protein] synthase
publication title Structural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria.
pubmed doi rcsb
source organism Vibrio cholerae o1 biovar el tor
total genus 39
structure length 126
sequence length 126
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
ec nomenclature ec 2.7.8.7: Holo-[acyl-carrier-protein] synthase.
pdb deposition date 2011-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01648 ACPS 4'-phosphopantetheinyl transferase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.20 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A 4'-phosphopantetheinyl transferase domain 3qmnA00
2QG8A 4JM7A 2BYDA 2WASA 1F7LA 3NE9A 1QR0A 2BDDA 2C43A 3H7QA 1FTEA 2WATA 1F7TA 3NFDA 3NE3B 2JBZA 1F80A 5CMOA 4HC6A 2WDYA 2CG5A 3HYKA 2JCAA 3QMNA 2WDSA 4MRTA 3GWMA 2WDOA 3NE1A 1FTFA 1FTHA 2WASB 3HQJA 4DXEA 5CXDA
chains in the Genus database with same CATH superfamily
2QG8A 2C43A 1YITR 3H7QA 3J7ZS 3NFDA 2OTLR 3I56R 1W2BQ 4IO9P 1F80A 5CMOA 3OW2Q 3QMNA 4MRTA 3CPWQ 1YIJR 3GWMA 3NE1A 4IOAP 2WASB 4DXEA 3J7YT 3G71R 3CCUR 1Q81S 1NJIS 3CMAR 3NE9A 1QR0A 2BDDA 1FTEA 3CCVR 4WFNP 1VQ5R 1S72R 2D0OA 1BXEA 3CD6R 4WCEP 4U67P 1K9MS 1YHQR 1VQ9R 4WF9P 2CG5A 5GAGT 1KQSQ 2JCAA 1VQNR 2WDSA 5DM6P 1YJ9R 2ZJPP 1M1KS 3CCJR 1KD1S 1VQ6R 2QEXR 1VQ8R 5GADT 3CCMR 4JM7A 3CC2R 1F7LA 4V19W 3CXCQ 5HL7P 2WATA 1VQPR 1Q7YS 1JJ2Q 3CCLR 3NE3B 3PIOP 3CCQR 2JBZA 5JVGP 1YJNR 4UY8S 1KC8S 3HYKA 1VQ7R 5DM7P 4IOCP 3PIPP 3I55R 1YJWR 1K73S 2ZJQP 3CCSR 4WFAP 1N8RS 1K8AS 1FTFA 3DLLP 1FTHA 3CCER 5JVHP 3HQJA 4WFBP 1Q86S 1QVGQ 5GAET 5GAHT 5MLCU 3G4SR 1YI2R 2BYDA 1Q82S 2WASA 3G6ER 1I4JA 1F7TA 1NBWA 5H1SU 3CC7R 1VQMR 1M90S 1VQ4R 2OTJR 3CF5P 4HC6A 3CCRR 1VQLR 2ZJRP 2WDYA 1VQKR 3CMER 2WDOA 1VQOR 2D0PA 2QA4R 5CXDA 3CC4R 1QVFQ
chains in the Genus database with same CATH topology
2QG8A 4JM7A 2BYDA 2WASA 1F7LA 3NE9A 1QR0A 2BDDA 2C43A 3H7QA 1FTEA 2WATA 1F7TA 3NFDA 3NE3B 2JBZA 1F80A 5CMOA 4HC6A 2WDYA 2CG5A 3HYKA 2JCAA 3QMNA 2WDSA 4MRTA 3GWMA 2WDOA 3NE1A 1FTFA 1FTHA 2WASB 3HQJA 4DXEA 5CXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QG8 A;  4JM7 A;  2BYD A;  2WAS A;  1F7L A;  3NE9 A;  1QR0 A;  2BDD A;  2C43 A;  3H7Q A;  1FTE A;  2WAT A;  1F7T A;  3NFD A;  3NE3 B;  2JBZ A;  1F80 A;  5CMO A;  4HC6 A;  2WDY A;  2CG5 A;  3HYK A;  2JCA A;  3QMN A;  2WDS A;  4MRT A;  3GWM A;  2WDO A;  3NE1 A;  1FTF A;  1FTH A;  2WAS B;  3HQJ A;  4DXE A;  5CXD A; 
#chains in the Genus database with same CATH topology
 2QG8 A;  2C43 A;  1YIT R;  3H7Q A;  3J7Z S;  3NFD A;  2OTL R;  3I56 R;  1W2B Q;  4IO9 P;  1F80 A;  5CMO A;  3OW2 Q;  3QMN A;  4MRT A;  3CPW Q;  1YIJ R;  3GWM A;  3NE1 A;  4IOA P;  2WAS B;  4DXE A;  3J7Y T;  3G71 R;  3CCU R;  1Q81 S;  1NJI S;  3CMA R;  3NE9 A;  1QR0 A;  2BDD A;  1FTE A;  3CCV R;  4WFN P;  1VQ5 R;  1S72 R;  2D0O A;  1BXE A;  3CD6 R;  4WCE P;  4U67 P;  1K9M S;  1YHQ R;  1VQ9 R;  4WF9 P;  2CG5 A;  5GAG T;  1KQS Q;  2JCA A;  1VQN R;  2WDS A;  5DM6 P;  1YJ9 R;  2ZJP P;  1M1K S;  3CCJ R;  1KD1 S;  1VQ6 R;  2QEX R;  1VQ8 R;  5GAD T;  3CCM R;  4JM7 A;  3CC2 R;  1F7L A;  4V19 W;  3CXC Q;  5HL7 P;  2WAT A;  1VQP R;  1Q7Y S;  1JJ2 Q;  3CCL R;  3NE3 B;  3PIO P;  3CCQ R;  2JBZ A;  5JVG P;  1YJN R;  4UY8 S;  1KC8 S;  3HYK A;  1VQ7 R;  5DM7 P;  4IOC P;  3PIP P;  3I55 R;  1YJW R;  1K73 S;  2ZJQ P;  3CCS R;  4WFA P;  1N8R S;  1K8A S;  1FTF A;  3DLL P;  1FTH A;  3CCE R;  5JVH P;  3HQJ A;  4WFB P;  1Q86 S;  1QVG Q;  5GAE T;  5GAH T;  5MLC U;  3G4S R;  1YI2 R;  2BYD A;  1Q82 S;  2WAS A;  3G6E R;  1I4J A;  1F7T A;  1NBW A;  5H1S U;  3CC7 R;  1VQM R;  1M90 S;  1VQ4 R;  2OTJ R;  3CF5 P;  4HC6 A;  3CCR R;  1VQL R;  2ZJR P;  2WDY A;  1VQK R;  3CME R;  2WDO A;  1VQO R;  2D0P A;  2QA4 R;  5CXD A;  3CC4 R;  1QVF Q; 
#chains in the Genus database with same CATH homology
 2QG8 A;  4JM7 A;  2BYD A;  2WAS A;  1F7L A;  3NE9 A;  1QR0 A;  2BDD A;  2C43 A;  3H7Q A;  1FTE A;  2WAT A;  1F7T A;  3NFD A;  3NE3 B;  2JBZ A;  1F80 A;  5CMO A;  4HC6 A;  2WDY A;  2CG5 A;  3HYK A;  2JCA A;  3QMN A;  2WDS A;  4MRT A;  3GWM A;  2WDO A;  3NE1 A;  1FTF A;  1FTH A;  2WAS B;  3HQJ A;  4DXE A;  5CXD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...