3QO4A

The crystal structure of death receptor 6
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
163
structure length
163
Chain Sequence
LIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Tumor necrosis factor receptor superfamily member 21
publication title The crystal structure of death receptor 6 (DR6): a potential receptor of the amyloid precursor protein (APP).
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2011-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3qo4A02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3qo4A01
5L36B 3U3TA 3TJEF 1ZA3R 3ME4A 4KGGC 3URFZ 4KGQC 5CIRE 4E4DR 1D4VA 1SG1X 3BUKC 3THMF 1JMAB 2X10A 1FT4A 4I9XC 5IHLA 4BK4A 2HEVR 5BNQR 1TNRR 4M4RA 3FL7A 1DU3A 2H9GR 4MSVB 4GIQR 3WVTA 4BK5A 4J6GC 3MHDD 3K51B 4RSUD 3ME2R 2UWIA 2AW2B 3QD6R 3MI8D 3IJ2X 3U3PA 3U3VA 2HEYR 4OD2S 5DMJA 4YN0A 3MBWA 1D0GR 4FHQA 4N90R 4MXWR 4M4PA 3U3QA 3U3SA 1NCFA 3X3FA 3QO4A 1EXTA 3QBQB 3ALQR
chains in the Genus database with same CATH superfamily
5L36B 3U3TA 2E4WA 3TJEF 1ZA3R 3ME4A 4KGGC 3URFZ 4KGQC 5CIRE 4E4DR 1D4VA 1SG1X 3BUKC 3THMF 1JMAB 2X10A 1FT4A 4I9XC 5IHLA 2E4XA 4BK4A 2E4UA 2HEVR 5BNQR 1TNRR 4M4RA 3FL7A 1DU3A 2H9GR 4MSVB 4GIQR 3WVTA 4BK5A 2E4YA 4J6GC 3MHDD 3K51B 4RSUD 3ME2R 2UWIA 2AW2B 3QD6R 3MI8D 3IJ2X 3U3PA 3U3VA 2HEYR 4OD2S 5DMJA 4YN0A 3MBWA 1D0GR 4FHQA 4N90R 4MXWR 4M4PA 3U3QA 2E4VA 1NCFA 3U3SA 3X3FA 3QO4A 2QR6A 1EXTA 3QBQB 3ALQR
chains in the Genus database with same CATH topology
5L36B 3U3TA 3TJEF 1ZA3R 3ME4A 4KGGC 3URFZ 4KGQC 5CIRE 4E4DR 1D4VA 1SG1X 3BUKC 3THMF 1JMAB 2X10A 1FT4A 4I9XC 5IHLA 4BK4A 2HEVR 5BNQR 1TNRR 4M4RA 3FL7A 1DU3A 2H9GR 4MSVB 4GIQR 3WVTA 4BK5A 4J6GC 3MHDD 3K51B 4RSUD 3ME2R 2UWIA 2AW2B 3QD6R 3MI8D 3IJ2X 3U3PA 3U3VA 2HEYR 4OD2S 5DMJA 4YN0A 3MBWA 1D0GR 4FHQA 4N90R 4MXWR 4M4PA 3U3QA 3U3SA 1NCFA 3X3FA 3QO4A 1EXTA 3QBQB 3ALQR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L36 B;  3U3T A;  3TJE F;  1ZA3 R;  3ME4 A;  4KGG C;  3URF Z;  4KGQ C;  5CIR E;  4E4D R;  1D4V A;  1SG1 X;  3BUK C;  3THM F;  1JMA B;  2X10 A;  1FT4 A;  4I9X C;  5IHL A;  4BK4 A;  2HEV R;  5BNQ R;  1TNR R;  4M4R A;  3FL7 A;  1DU3 A;  2H9G R;  4MSV B;  4GIQ R;  3WVT A;  4BK5 A;  4J6G C;  3MHD D;  3K51 B;  4RSU D;  3ME2 R;  2UWI A;  2AW2 B;  3QD6 R;  3MI8 D;  3IJ2 X;  3U3P A;  3U3V A;  2HEY R;  4OD2 S;  5DMJ A;  4YN0 A;  3MBW A;  1D0G R;  4FHQ A;  4N90 R;  4MXW R;  4M4P A;  3U3Q A;  3U3S A;  1NCF A;  3X3F A;  3QO4 A;  1EXT A;  3QBQ B;  3ALQ R; 
#chains in the Genus database with same CATH topology
 5L36 B;  3U3T A;  2E4W A;  3TJE F;  1ZA3 R;  3ME4 A;  4KGG C;  3URF Z;  4KGQ C;  5CIR E;  4E4D R;  1D4V A;  1SG1 X;  3BUK C;  3THM F;  1JMA B;  2X10 A;  1FT4 A;  4I9X C;  5IHL A;  2E4X A;  4BK4 A;  2E4U A;  2HEV R;  5BNQ R;  1TNR R;  4M4R A;  3FL7 A;  1DU3 A;  2H9G R;  4MSV B;  4GIQ R;  3WVT A;  4BK5 A;  2E4Y A;  4J6G C;  3MHD D;  3K51 B;  4RSU D;  3ME2 R;  2UWI A;  2AW2 B;  3QD6 R;  3MI8 D;  3IJ2 X;  3U3P A;  3U3V A;  2HEY R;  4OD2 S;  5DMJ A;  4YN0 A;  3MBW A;  1D0G R;  4FHQ A;  4N90 R;  4MXW R;  4M4P A;  3U3Q A;  2E4V A;  1NCF A;  3U3S A;  3X3F A;  3QO4 A;  2QR6 A;  1EXT A;  3QBQ B;  3ALQ R; 
#chains in the Genus database with same CATH homology
 5L36 B;  3U3T A;  3TJE F;  1ZA3 R;  3ME4 A;  4KGG C;  3URF Z;  4KGQ C;  5CIR E;  4E4D R;  1D4V A;  1SG1 X;  3BUK C;  3THM F;  1JMA B;  2X10 A;  1FT4 A;  4I9X C;  5IHL A;  4BK4 A;  2HEV R;  5BNQ R;  1TNR R;  4M4R A;  3FL7 A;  1DU3 A;  2H9G R;  4MSV B;  4GIQ R;  3WVT A;  4BK5 A;  4J6G C;  3MHD D;  3K51 B;  4RSU D;  3ME2 R;  2UWI A;  2AW2 B;  3QD6 R;  3MI8 D;  3IJ2 X;  3U3P A;  3U3V A;  2HEY R;  4OD2 S;  5DMJ A;  4YN0 A;  3MBW A;  1D0G R;  4FHQ A;  4N90 R;  4MXW R;  4M4P A;  3U3Q A;  3U3S A;  1NCF A;  3X3F A;  3QO4 A;  1EXT A;  3QBQ B;  3ALQ R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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