3QVFA

Crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with mgadp and fosfomycin vanadate
Total Genus 84
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
274
structure length
274
Chain Sequence
HHSSGLVPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural and biochemical insights into the mechanism of fosfomycin phosphorylation by fosfomycin resistance kinase FomA.
pubmed doi rcsb
molecule keywords FomA protein
molecule tags Transferase
source organism Streptomyces wedmorensis
total genus 84
structure length 274
sequence length 274
ec nomenclature
pdb deposition date 2011-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3qvfA00
1E19A 3D41A 1OH9A 3K56A 3LL5A 3S6GA 2AP9A 3K4OA 3WWMA 2BNFA 4AB7A 3AB4A 4F6TB 3K52A 2VA1A 2W21A 2JI5A 3L86A 4NDRB 3QURA 2WE5A 3D40A 4NDOA 2BNEA 3LKKA 2J4JA 1OHAA 4NDQB 2CDQA 2BTYA 3ZZGA 2RD5A 3C20A 2WXBA 3L76A 4NDQA 2R98A 3QUOA 1B7BA 2OGXA 3EK6A 2J0XA 4USJA 1GSJA 3U6UA 2BRIA 4NDOB 2BRXA 2J4KA 2IJ9A 1YBDA 4NDPA 3TVIA 2JJ4A 4JZ8A 3AAWA 2A1FA 3KZFA 4JZ7A 2OGXB 3NWYA 2BNDA 1OHBA 3D2PA 3ZZHA 4A7XA 3AB2A 3ZZFA 2J0WA 2AKOA 4KZTA 4NDPB 2J5TA 1GS5A 3LL9A 1Z9DA 2V4YA 3ZZIA 2R8VA 2WE4A 3B8GA 2X2WA 4JZ9A 3C1NA 2HMFA 3WWNA 3T7BA 2J5VA 3K4YA 2BUFA 3QUNA 2JJXA 2BMUA 3C1MA 3EK5A 2V5HA 3D2MA 3QVFA 4OLCA 4AXSA 4Q1TA 4F6TA 2J4LA 3QVHA 2E9YA 4A7WA 4NDRA 4I49A 3S6KA 3S6HA
chains in the Genus database with same CATH superfamily
1E19A 3D41A 1OH9A 3K56A 3LL5A 3S6GA 2AP9A 3K4OA 3WWMA 2BNFA 4AB7A 3AB4A 4F6TB 3K52A 2VA1A 2W21A 2JI5A 3L86A 4NDRB 3QURA 2WE5A 3D40A 4NDOA 2BNEA 3LKKA 2J4JA 1OHAA 4NDQB 2CDQA 2BTYA 3ZZGA 2RD5A 3C20A 2WXBA 3L76A 4NDQA 2R98A 3QUOA 1B7BA 2OGXA 3EK6A 2J0XA 4USJA 1GSJA 3U6UA 2BRIA 4NDOB 2BRXA 2J4KA 2IJ9A 1YBDA 4NDPA 3TVIA 2JJ4A 4JZ8A 3AAWA 2A1FA 3KZFA 4JZ7A 2OGXB 3NWYA 2BNDA 1OHBA 3D2PA 3ZZHA 4A7XA 3AB2A 3ZZFA 2J0WA 2AKOA 4KZTA 4NDPB 2J5TA 1GS5A 3LL9A 1Z9DA 2V4YA 3ZZIA 2R8VA 2WE4A 3B8GA 2X2WA 4JZ9A 3C1NA 2HMFA 3WWNA 3T7BA 2J5VA 3K4YA 2BUFA 3QUNA 2JJXA 2BMUA 3C1MA 3EK5A 2V5HA 3D2MA 3QVFA 4OLCA 4AXSA 4Q1TA 4F6TA 2J4LA 3QVHA 2E9YA 4A7WA 4NDRA 4I49A 3S6KA 3S6HA
chains in the Genus database with same CATH topology
1E19A 3D41A 1OH9A 3K56A 3LL5A 3S6GA 2AP9A 3K4OA 3WWMA 2BNFA 4AB7A 3AB4A 4F6TB 3K52A 2VA1A 2W21A 2JI5A 3L86A 4NDRB 3QURA 2WE5A 3D40A 4NDOA 2BNEA 3LKKA 2J4JA 1OHAA 4NDQB 2CDQA 2BTYA 3ZZGA 2RD5A 3C20A 2WXBA 3L76A 4NDQA 2R98A 3QUOA 1B7BA 2OGXA 3EK6A 2J0XA 4USJA 1GSJA 3U6UA 2BRIA 4NDOB 2BRXA 2J4KA 2IJ9A 1YBDA 4NDPA 3TVIA 2JJ4A 4JZ8A 3AAWA 2A1FA 3KZFA 4JZ7A 2OGXB 3NWYA 2BNDA 1OHBA 3D2PA 3ZZHA 4A7XA 3AB2A 3ZZFA 2J0WA 2AKOA 4KZTA 4NDPB 2J5TA 1GS5A 3LL9A 1Z9DA 2V4YA 3ZZIA 2R8VA 2WE4A 3B8GA 2X2WA 4JZ9A 3C1NA 2HMFA 3WWNA 3T7BA 2J5VA 3K4YA 2BUFA 3QUNA 2JJXA 2BMUA 3C1MA 3EK5A 2V5HA 3D2MA 3QVFA 4OLCA 4AXSA 4Q1TA 4F6TA 2J4LA 3QVHA 2E9YA 4A7WA 4NDRA 4I49A 3S6KA 3S6HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E19 A;  3D41 A;  1OH9 A;  3K56 A;  3LL5 A;  3S6G A;  2AP9 A;  3K4O A;  3WWM A;  2BNF A;  4AB7 A;  3AB4 A;  4F6T B;  3K52 A;  2VA1 A;  2W21 A;  2JI5 A;  3L86 A;  4NDR B;  3QUR A;  2WE5 A;  3D40 A;  4NDO A;  2BNE A;  3LKK A;  2J4J A;  1OHA A;  4NDQ B;  2CDQ A;  2BTY A;  3ZZG A;  2RD5 A;  3C20 A;  2WXB A;  3L76 A;  4NDQ A;  2R98 A;  3QUO A;  1B7B A;  2OGX A;  3EK6 A;  2J0X A;  4USJ A;  1GSJ A;  3U6U A;  2BRI A;  4NDO B;  2BRX A;  2J4K A;  2IJ9 A;  1YBD A;  4NDP A;  3TVI A;  2JJ4 A;  4JZ8 A;  3AAW A;  2A1F A;  3KZF A;  4JZ7 A;  2OGX B;  3NWY A;  2BND A;  1OHB A;  3D2P A;  3ZZH A;  4A7X A;  3AB2 A;  3ZZF A;  2J0W A;  2AKO A;  4KZT A;  4NDP B;  2J5T A;  1GS5 A;  3LL9 A;  1Z9D A;  2V4Y A;  3ZZI A;  2R8V A;  2WE4 A;  3B8G A;  2X2W A;  4JZ9 A;  3C1N A;  2HMF A;  3WWN A;  3T7B A;  2J5V A;  3K4Y A;  2BUF A;  3QUN A;  2JJX A;  2BMU A;  3C1M A;  3EK5 A;  2V5H A;  3D2M A;  3QVF A;  4OLC A;  4AXS A;  4Q1T A;  4F6T A;  2J4L A;  3QVH A;  2E9Y A;  4A7W A;  4NDR A;  4I49 A;  3S6K A;  3S6H A; 
#chains in the Genus database with same CATH topology
 1E19 A;  3D41 A;  1OH9 A;  3K56 A;  3LL5 A;  3S6G A;  2AP9 A;  3K4O A;  3WWM A;  2BNF A;  4AB7 A;  3AB4 A;  4F6T B;  3K52 A;  2VA1 A;  2W21 A;  2JI5 A;  3L86 A;  4NDR B;  3QUR A;  2WE5 A;  3D40 A;  4NDO A;  2BNE A;  3LKK A;  2J4J A;  1OHA A;  4NDQ B;  2CDQ A;  2BTY A;  3ZZG A;  2RD5 A;  3C20 A;  2WXB A;  3L76 A;  4NDQ A;  2R98 A;  3QUO A;  1B7B A;  2OGX A;  3EK6 A;  2J0X A;  4USJ A;  1GSJ A;  3U6U A;  2BRI A;  4NDO B;  2BRX A;  2J4K A;  2IJ9 A;  1YBD A;  4NDP A;  3TVI A;  2JJ4 A;  4JZ8 A;  3AAW A;  2A1F A;  3KZF A;  4JZ7 A;  2OGX B;  3NWY A;  2BND A;  1OHB A;  3D2P A;  3ZZH A;  4A7X A;  3AB2 A;  3ZZF A;  2J0W A;  2AKO A;  4KZT A;  4NDP B;  2J5T A;  1GS5 A;  3LL9 A;  1Z9D A;  2V4Y A;  3ZZI A;  2R8V A;  2WE4 A;  3B8G A;  2X2W A;  4JZ9 A;  3C1N A;  2HMF A;  3WWN A;  3T7B A;  2J5V A;  3K4Y A;  2BUF A;  3QUN A;  2JJX A;  2BMU A;  3C1M A;  3EK5 A;  2V5H A;  3D2M A;  3QVF A;  4OLC A;  4AXS A;  4Q1T A;  4F6T A;  2J4L A;  3QVH A;  2E9Y A;  4A7W A;  4NDR A;  4I49 A;  3S6K A;  3S6H A; 
#chains in the Genus database with same CATH homology
 1E19 A;  3D41 A;  1OH9 A;  3K56 A;  3LL5 A;  3S6G A;  2AP9 A;  3K4O A;  3WWM A;  2BNF A;  4AB7 A;  3AB4 A;  4F6T B;  3K52 A;  2VA1 A;  2W21 A;  2JI5 A;  3L86 A;  4NDR B;  3QUR A;  2WE5 A;  3D40 A;  4NDO A;  2BNE A;  3LKK A;  2J4J A;  1OHA A;  4NDQ B;  2CDQ A;  2BTY A;  3ZZG A;  2RD5 A;  3C20 A;  2WXB A;  3L76 A;  4NDQ A;  2R98 A;  3QUO A;  1B7B A;  2OGX A;  3EK6 A;  2J0X A;  4USJ A;  1GSJ A;  3U6U A;  2BRI A;  4NDO B;  2BRX A;  2J4K A;  2IJ9 A;  1YBD A;  4NDP A;  3TVI A;  2JJ4 A;  4JZ8 A;  3AAW A;  2A1F A;  3KZF A;  4JZ7 A;  2OGX B;  3NWY A;  2BND A;  1OHB A;  3D2P A;  3ZZH A;  4A7X A;  3AB2 A;  3ZZF A;  2J0W A;  2AKO A;  4KZT A;  4NDP B;  2J5T A;  1GS5 A;  3LL9 A;  1Z9D A;  2V4Y A;  3ZZI A;  2R8V A;  2WE4 A;  3B8G A;  2X2W A;  4JZ9 A;  3C1N A;  2HMF A;  3WWN A;  3T7B A;  2J5V A;  3K4Y A;  2BUF A;  3QUN A;  2JJX A;  2BMU A;  3C1M A;  3EK5 A;  2V5H A;  3D2M A;  3QVF A;  4OLC A;  4AXS A;  4Q1T A;  4F6T A;  2J4L A;  3QVH A;  2E9Y A;  4A7W A;  4NDR A;  4I49 A;  3S6K A;  3S6H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...