3QWZA

Crystal structure of faf1 ubx-p97n-domain complex
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
177
structure length
175
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
publication title Dissection of the interaction between FAF1 UBX and p97
rcsb
source organism Homo sapiens
molecule tags Transport protein
total genus 48
structure length 175
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qwzA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qwzA02
1E32A 2JIPA 1YLEA 1TWAA 3GTKA 1AW8B 3OUGA 2E7ZA 1PYQA 4KLNA 3FKIA 1E18A 2NYAA 3QQ8A 5EPPA 1CZ5A 5C1BA 4QIWA 3HU1A 4DMRA 1I50A 2VUMA 2VPYA 5FTMA 2NVYA 1TWFA 2NVXA 3GTJA 1KQFA 1TWCA 5FTNA 1CZ4A 2PMZA 2JA7A 3HU3A 3GTGA 5GLFA 3H0GA 4AZDA 4GA5A 3IR6A 2NAPA 2JIQA 1CR5A 2YU9A 2VPWA 2KI8A 2JA5A 1Y4ZA 2VPZA 1G8KA 2R92A 1PYUB 5T5ID 1PT1A 3QQ7A 2WB1A 4KODA 1I3QA 3PLXB 2WAQA 1WCMA 4GA6A 4KO8A 1S3SA 2IV2X 1G8JA 1UHEA 2YUJA 4AAYA 3GTLA 4AOKB 1OGYA 2PJHB 1H0HA 3QC8A 2R7ZA 3IR7A 2B63A 4CRZA 2C45A 3HU2A 2E2IA 1FDIA 1VC3B 4C2MA 1FDOA 5FTJA 2JA6A 1IW7D 5FTLA 1SFOA 1AA6A 2Y0SA 1PQEA 1Q16A 5DYGA 5B6CA 1PQHA 2VPXA 4AYBA 4D7ZB 2DMRA 1Y1WA 1TMOA 4KDIA 5DYIA 3GTOA 1R9TA 1KQGA 1R7RA 4CS0A 3GTQA 1PPYA 2JIOA 1WLFA 1EU1A 3CQZA 4AONB 3DMRA 3TM7B 1PQFA 1DMSA 1K83A 1SIWA 3IR5A 1QCSA 2V3VA 3O5AA 2JIRA 2E2HA 5C18A 1UHDA 2R93A 1Y5IA 1TWHA 5T5MD 1TWGA 2JIMA 3GTPA 1E60A 1Y1VA 1H5NA 4CRYG 2JV2A 3HKZA 5FTKA 1QDNA 3QWZA 2V45A 1E61A 1R27A 4RV0A 1ZC1A 1E5VA 1DMRA 1PT0A 4KDLA 3TIWA 3ML1A 2EEOB 3GTMA 3CF2A
chains in the Genus database with same CATH superfamily
3X2IA 1E32A 2JIPA 1YLEA 4FIBA 3ENGA 1TWAA 2BE5D 3GTKA 1AW8B 3OUGA 2E7ZA 1PYQA 4KLNA 3FKIA 5H4UA 1E18A 2NYAA 3QQ8A 5EPPA 1BW4A 1CZ5A 5C1BA 3FPRA 1OA9A 3ZJUA 4QIWA 3HU1A 4DMRA 2A6HD 1I50A 2VUMA 4ZM7A 3ZGZA 4JP6A 2VPYA 5FTMA 4AVRA 2BH0A 5GM9A 2Q1DX 2NVYA 2YVLA 5CD1A 5D6YA 4FFTA 2GAEA 1TWFA 2NVXA 3GTJA 1KQFA 1TWCA 5FTNA 1CZ4A 2PMZA 2JA7A 3HU3A 3GTGA 5GLFA 4ARCA 3H0GA 2KY9A 4AZDA 2MM2A 4GA5A 3IR6A 2O5JD 2NAPA 2MM0A 4UC4A 2JIQA 4FG2A 2PWYA 1YNND 1CR5A 2YU9A 2VPWA 2KI8A 2JA5A 2A69D 1Y4ZA 2VPZA 2QQRA 1N10A 5ERGB 1G8KA 2R92A 2Q1CX 2Q1AX 2G5DA 1PYUB 5T5ID 3X2MA 2ENGA 1PT1A 3QQ7A 2WB1A 4KODA 1I3QA 5CCBA 3PLXB 4JCWA 2WAQA 3M3GA 1WCMA 4NOHA 4GA6A 1ZYRD 1I9GA 4KO8A 1S3SA 2IV2X 3SULA 2KQAA 4AQ7A 1G8JA 3FPTA 1UHEA 3X2LA 2YUJA 4AAYA 3GTLA 4AOKB 3ZJTA 1OGYA 2PJHB 3FPUA 1H0HA 3QC8A 2R7ZA 3IR7A 5D6WA 2B63A 4CRZA 2C45A 3LGAA 3HU2A 2E2IA 4ARIA 1FDIA 1VC3B 4C2MA 1FDOA 5FTJA 2JA6A 1IW7D 2HCZX 5FTLA 1SFOA 2AE0X 2PNWA 4JS7A 3SUMA 1AA6A 2Y0SA 3ZJVA 2G6GA 1PQEA 1Q16A 5DYGA 3X2NA 5B6CA 3LHDA 2A6ED 3X2GA 3X2OA 1PQHA 2VPXA 4AYBA 4D7ZB 2XDPA 5D6XA 5EQJB 1WC2A 2DMRA 3X2KA 1TMOA 1Y1WA 4KDIA 5DYIA 3GTOA 3CZBA 1BW3A 1R9TA 1KQGA 1R7RA 4CS0A 3GTQA 5GLXA 2GF7A 1L8FA 3MB5A 1PPYA 2JIOA 2Q18X 3BQBA 1WLFA 1EU1A 3CQZA 4JJOA 4AONB 2QQSA 4FG4A 2PICA 3DMRA 3TM7B 1PQFA 1DMSA 1K83A 4AS1A 3X2PA 1SIWA 3IR5A 1QCSA 2LW6A 2V3VA 1YNJD 3O5AA 1HD5A 2JIRA 1O54A 4L48A 2E2HA 5C18A 1UHDA 2R93A 2CW0D 1Y5IA 4JP7A 1SMYD 2GFAA 5CCXA 1TWHA 5T5MD 3X2HA 1TWGA 2JIMA 2B25A 3GTPA 1E60A 1Y1VA 1H5NA 2Q19X 4CRYG 5GLYA 3SUJA 2JV2A 4CQNA 2PJJA 4ENGA 3SUKA 4FERA 3HKZA 5FTKA 3D30A 1QDNA 3QWZA 3X2JA 2V45A 2PI8A 1E61A 1R27A 1ZC1A 4RV0A 1E5VA 1DMRA 1PT0A 4KDLA 3TIWA 3ML1A 1OA7A 2EEOB 3GTMA 2A68D 3CF2A
chains in the Genus database with same CATH topology
1E32A 2JIPA 1YLEA 4FIBA 1TWAA 2BE5D 3GTKA 1AW8B 3OUGA 2E7ZA 1PYQA 4KLNA 3FKIA 1E18A 2NYAA 3QQ8A 5EPPA 1CZ5A 3FPRA 5C1BA 3ZJUA 4QIWA 3HU1A 4DMRA 2A6HD 1I50A 2VUMA 3ZGZA 2VPYA 5FTMA 2Q1DX 2NVYA 2YVLA 5CD1A 5D6YA 2GAEA 1TWFA 2NVXA 3GTJA 1KQFA 1TWCA 5FTNA 1CZ4A 2PMZA 2JA7A 3HU3A 3GTGA 5GLFA 4ARCA 3H0GA 2KY9A 4AZDA 2MM2A 4GA5A 3IR6A 2O5JD 2NAPA 2MM0A 4UC4A 2JIQA 2PWYA 1YNND 1CR5A 2YU9A 2VPWA 2KI8A 2JA5A 2A69D 1Y4ZA 2VPZA 2QQRA 5ERGB 1G8KA 2R92A 2Q1CX 2Q1AX 2G5DA 1PYUB 5T5ID 1PT1A 3QQ7A 2WB1A 4KODA 1I3QA 5CCBA 3PLXB 2WAQA 1WCMA 4NOHA 4GA6A 1ZYRD 1I9GA 4KO8A 1S3SA 2IV2X 4AQ7A 1G8JA 3FPTA 1UHEA 2YUJA 4AAYA 3GTLA 4AOKB 3ZJTA 1OGYA 2PJHB 3FPUA 1H0HA 3QC8A 2R7ZA 3IR7A 5D6WA 2B63A 4CRZA 2C45A 3LGAA 3HU2A 2E2IA 4ARIA 1FDIA 1VC3B 4C2MA 1FDOA 5FTJA 2JA6A 1IW7D 5FTLA 1SFOA 2AE0X 2PNWA 3ZJVA 1AA6A 2Y0SA 2G6GA 1PQEA 1Q16A 5DYGA 5B6CA 3LHDA 2A6ED 2XDPA 1PQHA 2VPXA 4AYBA 4D7ZB 5D6XA 5EQJB 2DMRA 1Y1WA 1TMOA 4KDIA 5DYIA 3GTOA 3CZBA 1R9TA 1KQGA 1R7RA 4CS0A 3GTQA 2GF7A 3MB5A 1PPYA 2JIOA 2Q18X 3BQBA 1WLFA 1EU1A 3CQZA 4AONB 2QQSA 2PICA 3DMRA 3TM7B 1PQFA 1DMSA 1K83A 4AS1A 1SIWA 3IR5A 1QCSA 2LW6A 2V3VA 1YNJD 3O5AA 2JIRA 1O54A 2E2HA 5C18A 1UHDA 2R93A 2CW0D 1Y5IA 1SMYD 2GFAA 5CCXA 1TWHA 5T5MD 1TWGA 2JIMA 2B25A 3GTPA 1E60A 1Y1VA 1H5NA 2Q19X 4CRYG 2JV2A 4CQNA 2PJJA 3HKZA 5FTKA 1QDNA 3QWZA 2V45A 2PI8A 1E61A 1R27A 1ZC1A 4RV0A 1E5VA 1DMRA 1PT0A 4KDLA 3TIWA 3ML1A 2EEOB 3GTMA 2A68D 3CF2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E32 A;  2JIP A;  1YLE A;  1TWA A;  3GTK A;  1AW8 B;  3OUG A;  2E7Z A;  1PYQ A;  4KLN A;  3FKI A;  1E18 A;  2NYA A;  3QQ8 A;  5EPP A;  1CZ5 A;  5C1B A;  4QIW A;  3HU1 A;  4DMR A;  1I50 A;  2VUM A;  2VPY A;  5FTM A;  2NVY A;  1TWF A;  2NVX A;  3GTJ A;  1KQF A;  1TWC A;  5FTN A;  1CZ4 A;  2PMZ A;  2JA7 A;  3HU3 A;  3GTG A;  5GLF A;  3H0G A;  4AZD A;  4GA5 A;  3IR6 A;  2NAP A;  2JIQ A;  1CR5 A;  2YU9 A;  2VPW A;  2KI8 A;  2JA5 A;  1Y4Z A;  2VPZ A;  1G8K A;  2R92 A;  1PYU B;  5T5I D;  1PT1 A;  3QQ7 A;  2WB1 A;  4KOD A;  1I3Q A;  3PLX B;  2WAQ A;  1WCM A;  4GA6 A;  4KO8 A;  1S3S A;  2IV2 X;  1G8J A;  1UHE A;  2YUJ A;  4AAY A;  3GTL A;  4AOK B;  1OGY A;  2PJH B;  1H0H A;  3QC8 A;  2R7Z A;  3IR7 A;  2B63 A;  4CRZ A;  2C45 A;  3HU2 A;  2E2I A;  1FDI A;  1VC3 B;  4C2M A;  1FDO A;  5FTJ A;  2JA6 A;  1IW7 D;  5FTL A;  1SFO A;  1AA6 A;  2Y0S A;  1PQE A;  1Q16 A;  5DYG A;  5B6C A;  1PQH A;  2VPX A;  4AYB A;  4D7Z B;  2DMR A;  1Y1W A;  1TMO A;  4KDI A;  5DYI A;  3GTO A;  1R9T A;  1KQG A;  1R7R A;  4CS0 A;  3GTQ A;  1PPY A;  2JIO A;  1WLF A;  1EU1 A;  3CQZ A;  4AON B;  3DMR A;  3TM7 B;  1PQF A;  1DMS A;  1K83 A;  1SIW A;  3IR5 A;  1QCS A;  2V3V A;  3O5A A;  2JIR A;  2E2H A;  5C18 A;  1UHD A;  2R93 A;  1Y5I A;  1TWH A;  5T5M D;  1TWG A;  2JIM A;  3GTP A;  1E60 A;  1Y1V A;  1H5N A;  4CRY G;  2JV2 A;  3HKZ A;  5FTK A;  1QDN A;  3QWZ A;  2V45 A;  1E61 A;  1R27 A;  4RV0 A;  1ZC1 A;  1E5V A;  1DMR A;  1PT0 A;  4KDL A;  3TIW A;  3ML1 A;  2EEO B;  3GTM A;  3CF2 A; 
#chains in the Genus database with same CATH topology
 3X2I A;  1E32 A;  2JIP A;  1YLE A;  4FIB A;  3ENG A;  1TWA A;  2BE5 D;  3GTK A;  1AW8 B;  3OUG A;  2E7Z A;  1PYQ A;  4KLN A;  3FKI A;  5H4U A;  1E18 A;  2NYA A;  3QQ8 A;  5EPP A;  1BW4 A;  1CZ5 A;  5C1B A;  3FPR A;  1OA9 A;  3ZJU A;  4QIW A;  3HU1 A;  4DMR A;  2A6H D;  1I50 A;  2VUM A;  4ZM7 A;  3ZGZ A;  4JP6 A;  2VPY A;  5FTM A;  4AVR A;  2BH0 A;  5GM9 A;  2Q1D X;  2NVY A;  2YVL A;  5CD1 A;  5D6Y A;  4FFT A;  2GAE A;  1TWF A;  2NVX A;  3GTJ A;  1KQF A;  1TWC A;  5FTN A;  1CZ4 A;  2PMZ A;  2JA7 A;  3HU3 A;  3GTG A;  5GLF A;  4ARC A;  3H0G A;  2KY9 A;  4AZD A;  2MM2 A;  4GA5 A;  3IR6 A;  2O5J D;  2NAP A;  2MM0 A;  4UC4 A;  2JIQ A;  4FG2 A;  2PWY A;  1YNN D;  1CR5 A;  2YU9 A;  2VPW A;  2KI8 A;  2JA5 A;  2A69 D;  1Y4Z A;  2VPZ A;  2QQR A;  1N10 A;  5ERG B;  1G8K A;  2R92 A;  2Q1C X;  2Q1A X;  2G5D A;  1PYU B;  5T5I D;  3X2M A;  2ENG A;  1PT1 A;  3QQ7 A;  2WB1 A;  4KOD A;  1I3Q A;  5CCB A;  3PLX B;  4JCW A;  2WAQ A;  3M3G A;  1WCM A;  4NOH A;  4GA6 A;  1ZYR D;  1I9G A;  4KO8 A;  1S3S A;  2IV2 X;  3SUL A;  2KQA A;  4AQ7 A;  1G8J A;  3FPT A;  1UHE A;  3X2L A;  2YUJ A;  4AAY A;  3GTL A;  4AOK B;  3ZJT A;  1OGY A;  2PJH B;  3FPU A;  1H0H A;  3QC8 A;  2R7Z A;  3IR7 A;  5D6W A;  2B63 A;  4CRZ A;  2C45 A;  3LGA A;  3HU2 A;  2E2I A;  4ARI A;  1FDI A;  1VC3 B;  4C2M A;  1FDO A;  5FTJ A;  2JA6 A;  1IW7 D;  2HCZ X;  5FTL A;  1SFO A;  2AE0 X;  2PNW A;  4JS7 A;  3SUM A;  1AA6 A;  2Y0S A;  3ZJV A;  2G6G A;  1PQE A;  1Q16 A;  5DYG A;  3X2N A;  5B6C A;  3LHD A;  2A6E D;  3X2G A;  3X2O A;  1PQH A;  2VPX A;  4AYB A;  4D7Z B;  2XDP A;  5D6X A;  5EQJ B;  1WC2 A;  2DMR A;  3X2K A;  1TMO A;  1Y1W A;  4KDI A;  5DYI A;  3GTO A;  3CZB A;  1BW3 A;  1R9T A;  1KQG A;  1R7R A;  4CS0 A;  3GTQ A;  5GLX A;  2GF7 A;  1L8F A;  3MB5 A;  1PPY A;  2JIO A;  2Q18 X;  3BQB A;  1WLF A;  1EU1 A;  3CQZ A;  4JJO A;  4AON B;  2QQS A;  4FG4 A;  2PIC A;  3DMR A;  3TM7 B;  1PQF A;  1DMS A;  1K83 A;  4AS1 A;  3X2P A;  1SIW A;  3IR5 A;  1QCS A;  2LW6 A;  2V3V A;  1YNJ D;  3O5A A;  1HD5 A;  2JIR A;  1O54 A;  4L48 A;  2E2H A;  5C18 A;  1UHD A;  2R93 A;  2CW0 D;  1Y5I A;  4JP7 A;  1SMY D;  2GFA A;  5CCX A;  1TWH A;  5T5M D;  3X2H A;  1TWG A;  2JIM A;  2B25 A;  3GTP A;  1E60 A;  1Y1V A;  1H5N A;  2Q19 X;  4CRY G;  5GLY A;  3SUJ A;  2JV2 A;  4CQN A;  2PJJ A;  4ENG A;  3SUK A;  4FER A;  3HKZ A;  5FTK A;  3D30 A;  1QDN A;  3QWZ A;  3X2J A;  2V45 A;  2PI8 A;  1E61 A;  1R27 A;  1ZC1 A;  4RV0 A;  1E5V A;  1DMR A;  1PT0 A;  4KDL A;  3TIW A;  3ML1 A;  1OA7 A;  2EEO B;  3GTM A;  2A68 D;  3CF2 A; 
#chains in the Genus database with same CATH homology
 1E32 A;  2JIP A;  1YLE A;  4FIB A;  1TWA A;  2BE5 D;  3GTK A;  1AW8 B;  3OUG A;  2E7Z A;  1PYQ A;  4KLN A;  3FKI A;  1E18 A;  2NYA A;  3QQ8 A;  5EPP A;  1CZ5 A;  3FPR A;  5C1B A;  3ZJU A;  4QIW A;  3HU1 A;  4DMR A;  2A6H D;  1I50 A;  2VUM A;  3ZGZ A;  2VPY A;  5FTM A;  2Q1D X;  2NVY A;  2YVL A;  5CD1 A;  5D6Y A;  2GAE A;  1TWF A;  2NVX A;  3GTJ A;  1KQF A;  1TWC A;  5FTN A;  1CZ4 A;  2PMZ A;  2JA7 A;  3HU3 A;  3GTG A;  5GLF A;  4ARC A;  3H0G A;  2KY9 A;  4AZD A;  2MM2 A;  4GA5 A;  3IR6 A;  2O5J D;  2NAP A;  2MM0 A;  4UC4 A;  2JIQ A;  2PWY A;  1YNN D;  1CR5 A;  2YU9 A;  2VPW A;  2KI8 A;  2JA5 A;  2A69 D;  1Y4Z A;  2VPZ A;  2QQR A;  5ERG B;  1G8K A;  2R92 A;  2Q1C X;  2Q1A X;  2G5D A;  1PYU B;  5T5I D;  1PT1 A;  3QQ7 A;  2WB1 A;  4KOD A;  1I3Q A;  5CCB A;  3PLX B;  2WAQ A;  1WCM A;  4NOH A;  4GA6 A;  1ZYR D;  1I9G A;  4KO8 A;  1S3S A;  2IV2 X;  4AQ7 A;  1G8J A;  3FPT A;  1UHE A;  2YUJ A;  4AAY A;  3GTL A;  4AOK B;  3ZJT A;  1OGY A;  2PJH B;  3FPU A;  1H0H A;  3QC8 A;  2R7Z A;  3IR7 A;  5D6W A;  2B63 A;  4CRZ A;  2C45 A;  3LGA A;  3HU2 A;  2E2I A;  4ARI A;  1FDI A;  1VC3 B;  4C2M A;  1FDO A;  5FTJ A;  2JA6 A;  1IW7 D;  5FTL A;  1SFO A;  2AE0 X;  2PNW A;  3ZJV A;  1AA6 A;  2Y0S A;  2G6G A;  1PQE A;  1Q16 A;  5DYG A;  5B6C A;  3LHD A;  2A6E D;  2XDP A;  1PQH A;  2VPX A;  4AYB A;  4D7Z B;  5D6X A;  5EQJ B;  2DMR A;  1Y1W A;  1TMO A;  4KDI A;  5DYI A;  3GTO A;  3CZB A;  1R9T A;  1KQG A;  1R7R A;  4CS0 A;  3GTQ A;  2GF7 A;  3MB5 A;  1PPY A;  2JIO A;  2Q18 X;  3BQB A;  1WLF A;  1EU1 A;  3CQZ A;  4AON B;  2QQS A;  2PIC A;  3DMR A;  3TM7 B;  1PQF A;  1DMS A;  1K83 A;  4AS1 A;  1SIW A;  3IR5 A;  1QCS A;  2LW6 A;  2V3V A;  1YNJ D;  3O5A A;  2JIR A;  1O54 A;  2E2H A;  5C18 A;  1UHD A;  2R93 A;  2CW0 D;  1Y5I A;  1SMY D;  2GFA A;  5CCX A;  1TWH A;  5T5M D;  1TWG A;  2JIM A;  2B25 A;  3GTP A;  1E60 A;  1Y1V A;  1H5N A;  2Q19 X;  4CRY G;  2JV2 A;  4CQN A;  2PJJ A;  3HKZ A;  5FTK A;  1QDN A;  3QWZ A;  2V45 A;  2PI8 A;  1E61 A;  1R27 A;  1ZC1 A;  4RV0 A;  1E5V A;  1DMR A;  1PT0 A;  4KDL A;  3TIW A;  3ML1 A;  2EEO B;  3GTM A;  2A68 D;  3CF2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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