3QWZA

Crystal structure of faf1 ubx-p97n-domain complex
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
177
structure length
175
Chain Sequence
b'PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
molecule tags Transport protein
source organism Homo sapiens
publication title Dissection of the interaction between FAF1 UBX and p97
rcsb
total genus 48
structure length 175
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qwzA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qwzA02
5FTJA 1R27A 2R92A 3HKZA 1PYUB 2YU9A 2YUJA 5DYIA 1YLEA 3TM7B 4AOKB 5T5ID 5FTNA 2PJHB 1DMRA 2V3VA 4AZDA 5C18A 2EEOB 5DYGA 1SFOA 1PQFA 1E5VA 5B6CA 2JA5A 3HU2A 3O5AA 1SIWA 2E2HA 1CZ4A 1G8JA 1PYQA 1FDIA 1AW8B 1CR5A 2C45A 1OGYA 1E18A 1KQGA 4GA5A 2PMZA 2NVYA 2WB1A 1ZC1A 3QQ7A 3QWZA 5T5MD 2IV2X 1Q16A 1R7RA 3GTGA 1UHDA 3QC8A 3GTJA 2Y0SA 2E7ZA 4CRZA 1PT0A 2V45A 1R9TA 4AONB 4CRYG 2VPXA 1QDNA 4KO8A 2JA7A 1CZ5A 1VC3B 2JIQA 4AYBA 2JA6A 4GA6A 1Y1VA 4D7ZB 2E2IA 2R93A 1WLFA 1E60A 1TWHA 3TIWA 1KQFA 1TWFA 3GTLA 3GTKA 5C1BA 3HU3A 1K83A 4RV0A 5FTMA 3H0GA 3ML1A 4AAYA 2NVXA 4KODA 1I50A 1TMOA 3CQZA 1PQHA 1IW7D 3GTPA 5EPPA 4DMRA 4KDIA 1H5NA 1PQEA 3OUGA 2JIRA 3IR5A 2KI8A 4CS0A 1PPYA 3IR6A 3GTOA 1DMSA 2JIPA 2JV2A 1WCMA 3GTMA 4QIWA 1AA6A 1H0HA 1UHEA 2B63A 1E61A 1FDOA 3QQ8A 2VUMA 1Y1WA 1EU1A 2NYAA 2WAQA 1TWAA 2JIMA 1I3QA 3DMRA 1PT1A 2VPZA 4KDLA 1S3SA 2R7ZA 5FTKA 1QCSA 1Y4ZA 1TWCA 3CF2A 3FKIA 2VPWA 2VPYA 5FTLA 1E32A 1G8KA 3PLXB 3HU1A 5GLFA 1TWGA 4C2MA 2DMRA 3GTQA 1Y5IA 4KLNA 2JIOA 2NAPA 3IR7A
chains in the Genus database with same CATH superfamily
2AE0X 5FTJA 1R27A 2R92A 1O54A 3HKZA 1PYUB 2YU9A 4FG2A 5CCXA 2YUJA 5DYIA 2G5DA 2GF7A 1YNND 1YLEA 3TM7B 2A6HD 4UC4A 4AOKB 3BQBA 5T5ID 5FTNA 2ENGA 3X2IA 2PJHB 1DMRA 3ZJUA 2V3VA 3X2MA 4AZDA 5C18A 2EEOB 5DYGA 2Q1CX 2B25A 1SFOA 1PQFA 3SULA 1E5VA 5B6CA 2GFAA 4CQNA 2JA5A 3X2JA 3HU2A 3X2GA 3O5AA 1SIWA 2E2HA 1CZ4A 1G8JA 1PYQA 1FDIA 1AW8B 1CR5A 2C45A 1OGYA 4JJOA 1E18A 1KQGA 4GA5A 3M3GA 2PMZA 2PI8A 4NOHA 2PWYA 2NVYA 2Q18X 2QQRA 3ZJTA 3MB5A 2WB1A 1ZC1A 3ZGZA 3QQ7A 2XDPA 3ENGA 4FFTA 5GLYA 3QWZA 5T5MD 2IV2X 1Q16A 1ZYRD 3X2OA 1R7RA 3CZBA 1UHDA 3GTGA 1BW3A 2Q1DX 3LGAA 1L8FA 1YNJD 3QC8A 2Y0SA 4JCWA 3SUMA 3GTJA 2BH0A 3FPTA 3X2PA 2E7ZA 4CRZA 2Q19X 2KY9A 1PT0A 2V45A 3FPUA 1R9TA 4AONB 4CRYG 2VPXA 1QDNA 4KO8A 2JA7A 1CZ5A 1I9GA 1VC3B 2JIQA 4AYBA 2O5JD 2JA6A 4GA6A 3X2LA 5D6YA 1Y1VA 2LW6A 4JS7A 4D7ZB 3SUKA 2E2IA 2R93A 1WLFA 1E60A 4AS1A 1TWHA 3TIWA 1KQFA 1TWFA 3GTLA 3GTKA 5C1BA 3HU3A 1K83A 5GM9A 3ZJVA 3X2HA 4RV0A 4FG4A 5FTMA 3H0GA 3ML1A 4AAYA 2NVXA 4KODA 2A68D 1I50A 1TMOA 3CQZA 4FIBA 1PQHA 1IW7D 3GTPA 5EPPA 2GAEA 5ERGB 4DMRA 4JP7A 5CCBA 2G6GA 4KDIA 4AQ7A 1H5NA 1PQEA 1WC2A 2MM0A 3OUGA 2JIRA 3IR5A 2KI8A 2BE5D 4CS0A 1PPYA 2CW0D 2Q1AX 4FERA 3IR6A 3GTOA 3X2KA 1OA7A 2PNWA 1DMSA 2KQAA 2JIPA 4JP6A 5H4UA 1WCMA 3GTMA 4QIWA 1AA6A 2JV2A 2YVLA 5D6XA 5EQJB 1H0HA 3X2NA 3LHDA 1UHEA 2B63A 1E61A 1FDOA 4ENGA 4ARIA 1OA9A 1N10A 1BW4A 3QQ8A 3D30A 2VUMA 1Y1WA 1EU1A 2NYAA 2WAQA 1TWAA 2JIMA 1I3QA 3DMRA 1PT1A 2VPZA 4KDLA 1S3SA 2PJJA 2R7ZA 1SMYD 5FTKA 1QCSA 1Y4ZA 1TWCA 3CF2A 3FKIA 2A6ED 2A69D 2VPWA 2VPYA 5CD1A 5FTLA 2HCZX 5GLXA 1HD5A 2QQSA 1E32A 1G8KA 3PLXB 2MM2A 3HU1A 5GLFA 3FPRA 1TWGA 4ARCA 4ZM7A 3SUJA 4C2MA 4AVRA 5D6WA 2DMRA 3GTQA 2PICA 1Y5IA 4KLNA 2JIOA 2NAPA 3IR7A 4L48A
chains in the Genus database with same CATH topology
2AE0X 5FTJA 1R27A 2R92A 1O54A 3HKZA 1PYUB 2YU9A 5CCXA 2YUJA 5DYIA 2G5DA 2GF7A 1YNND 1YLEA 3TM7B 2A6HD 4UC4A 4AOKB 3BQBA 5T5ID 5FTNA 2PJHB 1DMRA 3ZJUA 2V3VA 4AZDA 5C18A 2EEOB 5DYGA 2Q1CX 2B25A 1SFOA 1PQFA 1E5VA 5B6CA 2GFAA 4CQNA 2JA5A 3HU2A 3O5AA 1SIWA 2E2HA 1CZ4A 1G8JA 1PYQA 1FDIA 1AW8B 1CR5A 2C45A 1OGYA 1E18A 1KQGA 4GA5A 2PMZA 2PI8A 4NOHA 2PWYA 2NVYA 2Q18X 2QQRA 3ZJTA 3MB5A 2WB1A 1ZC1A 3ZGZA 3QQ7A 2XDPA 3QWZA 5T5MD 2IV2X 1Q16A 1ZYRD 1R7RA 3CZBA 1UHDA 3GTGA 2Q1DX 3LGAA 3QC8A 1YNJD 3GTJA 2Y0SA 3FPTA 2E7ZA 4CRZA 2Q19X 2KY9A 1PT0A 2V45A 3FPUA 1R9TA 4AONB 4CRYG 2VPXA 1QDNA 4KO8A 2JA7A 1CZ5A 1I9GA 1VC3B 2JIQA 4AYBA 2O5JD 2JA6A 4GA6A 5D6YA 1Y1VA 2LW6A 4D7ZB 2E2IA 2R93A 1WLFA 1E60A 4AS1A 1TWHA 3TIWA 1KQFA 1TWFA 3GTLA 3GTKA 5C1BA 3HU3A 1K83A 3ZJVA 4RV0A 5FTMA 3H0GA 3ML1A 4AAYA 2NVXA 4KODA 2A68D 1I50A 1TMOA 3CQZA 4FIBA 1PQHA 1IW7D 3GTPA 5EPPA 2GAEA 5ERGB 4DMRA 5CCBA 2G6GA 4KDIA 4AQ7A 1H5NA 1PQEA 2MM0A 3OUGA 2JIRA 3IR5A 2KI8A 2BE5D 4CS0A 1PPYA 2CW0D 2Q1AX 3IR6A 3GTOA 2PNWA 1DMSA 2JIPA 2JV2A 5D6XA 1WCMA 3GTMA 4QIWA 1AA6A 2YVLA 5EQJB 1H0HA 3LHDA 1UHEA 2B63A 1E61A 1FDOA 4ARIA 3QQ8A 2VUMA 1Y1WA 1EU1A 2NYAA 2WAQA 1TWAA 2JIMA 1I3QA 3DMRA 1PT1A 2VPZA 4KDLA 2PJJA 1S3SA 2R7ZA 1SMYD 5FTKA 1QCSA 1Y4ZA 1TWCA 3CF2A 3FKIA 2A6ED 2A69D 2VPWA 2VPYA 5CD1A 5FTLA 2QQSA 1E32A 1G8KA 3PLXB 2MM2A 3HU1A 5GLFA 3FPRA 1TWGA 4ARCA 4C2MA 5D6WA 2DMRA 3GTQA 2PICA 1Y5IA 4KLNA 2JIOA 2NAPA 3IR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FTJ A;  1R27 A;  2R92 A;  3HKZ A;  1PYU B;  2YU9 A;  2YUJ A;  5DYI A;  1YLE A;  3TM7 B;  4AOK B;  5T5I D;  5FTN A;  2PJH B;  1DMR A;  2V3V A;  4AZD A;  5C18 A;  2EEO B;  5DYG A;  1SFO A;  1PQF A;  1E5V A;  5B6C A;  2JA5 A;  3HU2 A;  3O5A A;  1SIW A;  2E2H A;  1CZ4 A;  1G8J A;  1PYQ A;  1FDI A;  1AW8 B;  1CR5 A;  2C45 A;  1OGY A;  1E18 A;  1KQG A;  4GA5 A;  2PMZ A;  2NVY A;  2WB1 A;  1ZC1 A;  3QQ7 A;  3QWZ A;  5T5M D;  2IV2 X;  1Q16 A;  1R7R A;  3GTG A;  1UHD A;  3QC8 A;  3GTJ A;  2Y0S A;  2E7Z A;  4CRZ A;  1PT0 A;  2V45 A;  1R9T A;  4AON B;  4CRY G;  2VPX A;  1QDN A;  4KO8 A;  2JA7 A;  1CZ5 A;  1VC3 B;  2JIQ A;  4AYB A;  2JA6 A;  4GA6 A;  1Y1V A;  4D7Z B;  2E2I A;  2R93 A;  1WLF A;  1E60 A;  1TWH A;  3TIW A;  1KQF A;  1TWF A;  3GTL A;  3GTK A;  5C1B A;  3HU3 A;  1K83 A;  4RV0 A;  5FTM A;  3H0G A;  3ML1 A;  4AAY A;  2NVX A;  4KOD A;  1I50 A;  1TMO A;  3CQZ A;  1PQH A;  1IW7 D;  3GTP A;  5EPP A;  4DMR A;  4KDI A;  1H5N A;  1PQE A;  3OUG A;  2JIR A;  3IR5 A;  2KI8 A;  4CS0 A;  1PPY A;  3IR6 A;  3GTO A;  1DMS A;  2JIP A;  2JV2 A;  1WCM A;  3GTM A;  4QIW A;  1AA6 A;  1H0H A;  1UHE A;  2B63 A;  1E61 A;  1FDO A;  3QQ8 A;  2VUM A;  1Y1W A;  1EU1 A;  2NYA A;  2WAQ A;  1TWA A;  2JIM A;  1I3Q A;  3DMR A;  1PT1 A;  2VPZ A;  4KDL A;  1S3S A;  2R7Z A;  5FTK A;  1QCS A;  1Y4Z A;  1TWC A;  3CF2 A;  3FKI A;  2VPW A;  2VPY A;  5FTL A;  1E32 A;  1G8K A;  3PLX B;  3HU1 A;  5GLF A;  1TWG A;  4C2M A;  2DMR A;  3GTQ A;  1Y5I A;  4KLN A;  2JIO A;  2NAP A;  3IR7 A; 
#chains in the Genus database with same CATH topology
 2AE0 X;  5FTJ A;  1R27 A;  2R92 A;  1O54 A;  3HKZ A;  1PYU B;  2YU9 A;  4FG2 A;  5CCX A;  2YUJ A;  5DYI A;  2G5D A;  2GF7 A;  1YNN D;  1YLE A;  3TM7 B;  2A6H D;  4UC4 A;  4AOK B;  3BQB A;  5T5I D;  5FTN A;  2ENG A;  3X2I A;  2PJH B;  1DMR A;  3ZJU A;  2V3V A;  3X2M A;  4AZD A;  5C18 A;  2EEO B;  5DYG A;  2Q1C X;  2B25 A;  1SFO A;  1PQF A;  3SUL A;  1E5V A;  5B6C A;  2GFA A;  4CQN A;  2JA5 A;  3X2J A;  3HU2 A;  3X2G A;  3O5A A;  1SIW A;  2E2H A;  1CZ4 A;  1G8J A;  1PYQ A;  1FDI A;  1AW8 B;  1CR5 A;  2C45 A;  1OGY A;  4JJO A;  1E18 A;  1KQG A;  4GA5 A;  3M3G A;  2PMZ A;  2PI8 A;  4NOH A;  2PWY A;  2NVY A;  2Q18 X;  2QQR A;  3ZJT A;  3MB5 A;  2WB1 A;  1ZC1 A;  3ZGZ A;  3QQ7 A;  2XDP A;  3ENG A;  4FFT A;  5GLY A;  3QWZ A;  5T5M D;  2IV2 X;  1Q16 A;  1ZYR D;  3X2O A;  1R7R A;  3CZB A;  1UHD A;  3GTG A;  1BW3 A;  2Q1D X;  3LGA A;  1L8F A;  1YNJ D;  3QC8 A;  2Y0S A;  4JCW A;  3SUM A;  3GTJ A;  2BH0 A;  3FPT A;  3X2P A;  2E7Z A;  4CRZ A;  2Q19 X;  2KY9 A;  1PT0 A;  2V45 A;  3FPU A;  1R9T A;  4AON B;  4CRY G;  2VPX A;  1QDN A;  4KO8 A;  2JA7 A;  1CZ5 A;  1I9G A;  1VC3 B;  2JIQ A;  4AYB A;  2O5J D;  2JA6 A;  4GA6 A;  3X2L A;  5D6Y A;  1Y1V A;  2LW6 A;  4JS7 A;  4D7Z B;  3SUK A;  2E2I A;  2R93 A;  1WLF A;  1E60 A;  4AS1 A;  1TWH A;  3TIW A;  1KQF A;  1TWF A;  3GTL A;  3GTK A;  5C1B A;  3HU3 A;  1K83 A;  5GM9 A;  3ZJV A;  3X2H A;  4RV0 A;  4FG4 A;  5FTM A;  3H0G A;  3ML1 A;  4AAY A;  2NVX A;  4KOD A;  2A68 D;  1I50 A;  1TMO A;  3CQZ A;  4FIB A;  1PQH A;  1IW7 D;  3GTP A;  5EPP A;  2GAE A;  5ERG B;  4DMR A;  4JP7 A;  5CCB A;  2G6G A;  4KDI A;  4AQ7 A;  1H5N A;  1PQE A;  1WC2 A;  2MM0 A;  3OUG A;  2JIR A;  3IR5 A;  2KI8 A;  2BE5 D;  4CS0 A;  1PPY A;  2CW0 D;  2Q1A X;  4FER A;  3IR6 A;  3GTO A;  3X2K A;  1OA7 A;  2PNW A;  1DMS A;  2KQA A;  2JIP A;  4JP6 A;  5H4U A;  1WCM A;  3GTM A;  4QIW A;  1AA6 A;  2JV2 A;  2YVL A;  5D6X A;  5EQJ B;  1H0H A;  3X2N A;  3LHD A;  1UHE A;  2B63 A;  1E61 A;  1FDO A;  4ENG A;  4ARI A;  1OA9 A;  1N10 A;  1BW4 A;  3QQ8 A;  3D30 A;  2VUM A;  1Y1W A;  1EU1 A;  2NYA A;  2WAQ A;  1TWA A;  2JIM A;  1I3Q A;  3DMR A;  1PT1 A;  2VPZ A;  4KDL A;  1S3S A;  2PJJ A;  2R7Z A;  1SMY D;  5FTK A;  1QCS A;  1Y4Z A;  1TWC A;  3CF2 A;  3FKI A;  2A6E D;  2A69 D;  2VPW A;  2VPY A;  5CD1 A;  5FTL A;  2HCZ X;  5GLX A;  1HD5 A;  2QQS A;  1E32 A;  1G8K A;  3PLX B;  2MM2 A;  3HU1 A;  5GLF A;  3FPR A;  1TWG A;  4ARC A;  4ZM7 A;  3SUJ A;  4C2M A;  4AVR A;  5D6W A;  2DMR A;  3GTQ A;  2PIC A;  1Y5I A;  4KLN A;  2JIO A;  2NAP A;  3IR7 A;  4L48 A; 
#chains in the Genus database with same CATH homology
 2AE0 X;  5FTJ A;  1R27 A;  2R92 A;  1O54 A;  3HKZ A;  1PYU B;  2YU9 A;  5CCX A;  2YUJ A;  5DYI A;  2G5D A;  2GF7 A;  1YNN D;  1YLE A;  3TM7 B;  2A6H D;  4UC4 A;  4AOK B;  3BQB A;  5T5I D;  5FTN A;  2PJH B;  1DMR A;  3ZJU A;  2V3V A;  4AZD A;  5C18 A;  2EEO B;  5DYG A;  2Q1C X;  2B25 A;  1SFO A;  1PQF A;  1E5V A;  5B6C A;  2GFA A;  4CQN A;  2JA5 A;  3HU2 A;  3O5A A;  1SIW A;  2E2H A;  1CZ4 A;  1G8J A;  1PYQ A;  1FDI A;  1AW8 B;  1CR5 A;  2C45 A;  1OGY A;  1E18 A;  1KQG A;  4GA5 A;  2PMZ A;  2PI8 A;  4NOH A;  2PWY A;  2NVY A;  2Q18 X;  2QQR A;  3ZJT A;  3MB5 A;  2WB1 A;  1ZC1 A;  3ZGZ A;  3QQ7 A;  2XDP A;  3QWZ A;  5T5M D;  2IV2 X;  1Q16 A;  1ZYR D;  1R7R A;  3CZB A;  1UHD A;  3GTG A;  2Q1D X;  3LGA A;  3QC8 A;  1YNJ D;  3GTJ A;  2Y0S A;  3FPT A;  2E7Z A;  4CRZ A;  2Q19 X;  2KY9 A;  1PT0 A;  2V45 A;  3FPU A;  1R9T A;  4AON B;  4CRY G;  2VPX A;  1QDN A;  4KO8 A;  2JA7 A;  1CZ5 A;  1I9G A;  1VC3 B;  2JIQ A;  4AYB A;  2O5J D;  2JA6 A;  4GA6 A;  5D6Y A;  1Y1V A;  2LW6 A;  4D7Z B;  2E2I A;  2R93 A;  1WLF A;  1E60 A;  4AS1 A;  1TWH A;  3TIW A;  1KQF A;  1TWF A;  3GTL A;  3GTK A;  5C1B A;  3HU3 A;  1K83 A;  3ZJV A;  4RV0 A;  5FTM A;  3H0G A;  3ML1 A;  4AAY A;  2NVX A;  4KOD A;  2A68 D;  1I50 A;  1TMO A;  3CQZ A;  4FIB A;  1PQH A;  1IW7 D;  3GTP A;  5EPP A;  2GAE A;  5ERG B;  4DMR A;  5CCB A;  2G6G A;  4KDI A;  4AQ7 A;  1H5N A;  1PQE A;  2MM0 A;  3OUG A;  2JIR A;  3IR5 A;  2KI8 A;  2BE5 D;  4CS0 A;  1PPY A;  2CW0 D;  2Q1A X;  3IR6 A;  3GTO A;  2PNW A;  1DMS A;  2JIP A;  2JV2 A;  5D6X A;  1WCM A;  3GTM A;  4QIW A;  1AA6 A;  2YVL A;  5EQJ B;  1H0H A;  3LHD A;  1UHE A;  2B63 A;  1E61 A;  1FDO A;  4ARI A;  3QQ8 A;  2VUM A;  1Y1W A;  1EU1 A;  2NYA A;  2WAQ A;  1TWA A;  2JIM A;  1I3Q A;  3DMR A;  1PT1 A;  2VPZ A;  4KDL A;  2PJJ A;  1S3S A;  2R7Z A;  1SMY D;  5FTK A;  1QCS A;  1Y4Z A;  1TWC A;  3CF2 A;  3FKI A;  2A6E D;  2A69 D;  2VPW A;  2VPY A;  5CD1 A;  5FTL A;  2QQS A;  1E32 A;  1G8K A;  3PLX B;  2MM2 A;  3HU1 A;  5GLF A;  3FPR A;  1TWG A;  4ARC A;  4C2M A;  5D6W A;  2DMR A;  3GTQ A;  2PIC A;  1Y5I A;  4KLN A;  2JIO A;  2NAP A;  3IR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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