3QWZA

Crystal structure of faf1 ubx-p97n-domain complex
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
177
structure length
175
Chain Sequence
b'PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Transitional endoplasmic reticulum ATPase
publication title Dissection of the interaction between FAF1 UBX and p97
rcsb
source organism Homo sapiens
molecule tags Transport protein
total genus 48
structure length 175
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qwzA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qwzA02
1UHEA 4AONB 2R7ZA 5FTKA 1R7RA 3GTGA 5FTMA 1PT1A 5FTJA 2PJHB 1VC3B 3QWZA 2YU9A 1E61A 2Y0SA 1Y4ZA 2IV2X 3QQ7A 2VPXA 5B6CA 5T5MD 2JIPA 4KLNA 2WB1A 1AW8B 1SIWA 4AAYA 1KQFA 2JV2A 4AOKB 3PLXB 3HU1A 5DYIA 4CRZA 1CR5A 3FKIA 1I50A 3GTLA 1TWCA 4RV0A 5FTLA 3HU3A 2VPWA 2JA5A 3DMRA 1FDIA 1PQEA 3GTOA 4CS0A 3GTPA 2NVXA 1CZ4A 5DYGA 4KDIA 5C1BA 1K83A 4KDLA 1Y5IA 1R27A 2JIQA 5EPPA 2E2HA 1TWFA 1TMOA 2R92A 1FDOA 4GA6A 1DMRA 3OUGA 3ML1A 1SFOA 3HU2A 1Y1VA 4QIWA 2WAQA 3TM7B 4AZDA 3O5AA 2NAPA 3H0GA 3QC8A 5C18A 2V3VA 1IW7D 3IR7A 1WCMA 1DMSA 2KI8A 3GTQA 1E32A 1KQGA 1PQFA 1PT0A 2JIOA 2E7ZA 3CQZA 4CRYG 3TIWA 1WLFA 4DMRA 1ZC1A 1YLEA 1E60A 2E2IA 2B63A 4C2MA 1PYUB 1H5NA 3HKZA 2C45A 1G8KA 1PQHA 1TWHA 2PMZA 1H0HA 1Y1WA 4AYBA 3IR6A 2JA7A 1Q16A 1PYQA 1QDNA 1TWAA 3GTJA 1QCSA 1E18A 2JIMA 1CZ5A 3CF2A 2JIRA 1PPYA 4GA5A 3GTKA 2NYAA 2JA6A 5T5ID 1TWGA 4KODA 4D7ZB 2EEOB 3QQ8A 1S3SA 2VUMA 2V45A 1UHDA 2VPYA 2YUJA 1AA6A 5FTNA 1EU1A 3GTMA 1I3QA 2DMRA 1R9TA 4KO8A 2R93A 3IR5A 5GLFA 2NVYA 1E5VA 2VPZA 1G8JA 1OGYA
chains in the Genus database with same CATH superfamily
1UHEA 4AONB 2R7ZA 5FTKA 1R7RA 2Q18X 3X2NA 3GTGA 5FTMA 1PT1A 1ZYRD 3M3GA 2PJHB 1VC3B 4JS7A 3QWZA 2G5DA 5FTJA 3CZBA 2YU9A 2Q1AX 1E61A 2Y0SA 1Y4ZA 2KY9A 2IV2X 3QQ7A 2VPXA 5B6CA 3FPRA 5T5MD 5EQJB 4FG4A 2JIPA 4KLNA 2WB1A 1AW8B 1SIWA 4AAYA 1KQFA 2JV2A 3X2MA 4AOKB 3PLXB 3HU1A 5DYIA 4CRZA 1CR5A 3FKIA 1I50A 3GTLA 2Q1DX 2Q1CX 1TWCA 4RV0A 5FTLA 2AE0X 1YNJD 2VPWA 3HU3A 2JA5A 3DMRA 2MM0A 1FDIA 2PI8A 1PQEA 4ZM7A 3GTOA 2BH0A 4CS0A 3GTPA 2GF7A 2NVXA 1CZ4A 5DYGA 4KDIA 5C1BA 1K83A 4KDLA 1Y5IA 1R27A 2QQRA 2JIQA 3SUJA 5EPPA 2E2HA 4ARCA 1TWFA 2PNWA 1TMOA 2G6GA 3X2OA 2MM2A 2R92A 3SULA 3LGAA 3ZJTA 1FDOA 4ENGA 4GA6A 2LW6A 3ENGA 1DMRA 3OUGA 3ML1A 1SFOA 3HU2A 1Y1VA 4QIWA 2WAQA 4JP7A 3TM7B 4AZDA 3O5AA 3FPTA 3ZJVA 2NAPA 1N10A 3ZJUA 3H0GA 3X2HA 3QC8A 4NOHA 5C18A 2V3VA 3BQBA 5D6WA 3X2KA 2GFAA 1L8FA 1IW7D 3IR7A 3MB5A 5GM9A 2Q19X 1WCMA 1DMSA 2KI8A 3GTQA 1WC2A 3X2GA 1HD5A 1E32A 1KQGA 2PJJA 3SUKA 2ENGA 3SUMA 3X2IA 2XDPA 1OA9A 1PQFA 2B25A 2KQAA 1PT0A 3D30A 5D6YA 2JIOA 3X2PA 3X2JA 2E7ZA 3CQZA 4CRYG 3TIWA 1WLFA 4DMRA 2CW0D 5CCXA 1ZC1A 1YLEA 1E60A 5CCBA 3ZGZA 2E2IA 2B63A 2A6ED 4C2MA 1PYUB 2A68D 1H5NA 4FFTA 1O54A 3HKZA 3FPUA 2C45A 1G8KA 1PQHA 1TWHA 2PMZA 1H0HA 1Y1WA 4AYBA 4FIBA 3IR6A 4UC4A 4ARIA 4CQNA 2A69D 2JA7A 4AQ7A 1Q16A 5GLYA 4L48A 1PYQA 1QDNA 1TWAA 3GTJA 1QCSA 1E18A 2JIMA 3LHDA 1CZ5A 3CF2A 5GLXA 2JIRA 2QQSA 1SMYD 1BW3A 1PPYA 4FERA 4GA5A 3GTKA 2NYAA 4AVRA 2JA6A 5T5ID 1TWGA 4KODA 4D7ZB 2EEOB 3QQ8A 1S3SA 4JJOA 1I9GA 2PICA 2PWYA 5CD1A 2VUMA 2V45A 4FG2A 2A6HD 1UHDA 5ERGB 4AS1A 2O5JD 2VPYA 2YUJA 1OA7A 5H4UA 1AA6A 3X2LA 5FTNA 1EU1A 3GTMA 1I3QA 2DMRA 2HCZX 1R9TA 1BW4A 4JCWA 4KO8A 2R93A 3IR5A 5D6XA 5GLFA 2NVYA 2YVLA 1YNND 2BE5D 1E5VA 2GAEA 2VPZA 4JP6A 1G8JA 1OGYA
chains in the Genus database with same CATH topology
1UHEA 4AONB 2R7ZA 5FTKA 1R7RA 2Q18X 3GTGA 5FTMA 1PT1A 1ZYRD 5FTJA 2PJHB 1VC3B 2Q1AX 3QWZA 2G5DA 3CZBA 2YU9A 1E61A 2Y0SA 1Y4ZA 2KY9A 2IV2X 3QQ7A 2VPXA 5B6CA 3FPRA 5T5MD 5EQJB 2JIPA 4KLNA 2WB1A 1AW8B 1SIWA 4AAYA 1KQFA 2JV2A 4AOKB 3PLXB 3HU1A 5DYIA 4CRZA 1CR5A 3FKIA 1I50A 3GTLA 2Q1DX 2Q1CX 1TWCA 4RV0A 5FTLA 2AE0X 1YNJD 2VPWA 3HU3A 2JA5A 3DMRA 2MM0A 1FDIA 2PI8A 1PQEA 3GTOA 4CS0A 3GTPA 2GF7A 2NVXA 1CZ4A 5DYGA 4KDIA 5C1BA 1K83A 4KDLA 1Y5IA 1R27A 2QQRA 2JIQA 5EPPA 2E2HA 4ARCA 1TWFA 2PNWA 1TMOA 2G6GA 2MM2A 2R92A 3LGAA 3ZJTA 1FDOA 4GA6A 2LW6A 1DMRA 3OUGA 3ML1A 1SFOA 3HU2A 1Y1VA 4QIWA 2WAQA 3TM7B 4AZDA 3O5AA 3FPTA 3ZJVA 2NAPA 3ZJUA 3H0GA 3QC8A 4NOHA 5C18A 2V3VA 3BQBA 5D6WA 2GFAA 1IW7D 3IR7A 3MB5A 2Q19X 1WCMA 1DMSA 2KI8A 3GTQA 1E32A 1KQGA 2PJJA 2XDPA 5D6YA 2B25A 1PQFA 1PT0A 2JIOA 2E7ZA 3CQZA 4CRYG 3TIWA 1WLFA 4DMRA 2CW0D 5CCXA 1ZC1A 1YLEA 1E60A 5CCBA 3ZGZA 2E2IA 2B63A 2A6ED 4C2MA 1PYUB 2A68D 1H5NA 1O54A 3HKZA 3FPUA 2C45A 1G8KA 1PQHA 1TWHA 2PMZA 1H0HA 1Y1WA 4AYBA 4FIBA 3IR6A 4UC4A 4ARIA 4CQNA 2A69D 2JA7A 4AQ7A 1Q16A 1PYQA 1QDNA 1TWAA 3GTJA 1QCSA 1E18A 2JIMA 3LHDA 1CZ5A 3CF2A 2JIRA 2QQSA 1SMYD 1PPYA 4GA5A 3GTKA 2NYAA 2JA6A 5T5ID 1TWGA 4KODA 4D7ZB 2EEOB 3QQ8A 1S3SA 1I9GA 2PICA 2PWYA 5CD1A 2VUMA 2V45A 2A6HD 1UHDA 5ERGB 4AS1A 2O5JD 2VPYA 2YUJA 1AA6A 5FTNA 1EU1A 3GTMA 1I3QA 2DMRA 1R9TA 4KO8A 2R93A 3IR5A 5D6XA 5GLFA 2NVYA 2YVLA 1YNND 2BE5D 1E5VA 2GAEA 2VPZA 1G8JA 1OGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHE A;  4AON B;  2R7Z A;  5FTK A;  1R7R A;  3GTG A;  5FTM A;  1PT1 A;  5FTJ A;  2PJH B;  1VC3 B;  3QWZ A;  2YU9 A;  1E61 A;  2Y0S A;  1Y4Z A;  2IV2 X;  3QQ7 A;  2VPX A;  5B6C A;  5T5M D;  2JIP A;  4KLN A;  2WB1 A;  1AW8 B;  1SIW A;  4AAY A;  1KQF A;  2JV2 A;  4AOK B;  3PLX B;  3HU1 A;  5DYI A;  4CRZ A;  1CR5 A;  3FKI A;  1I50 A;  3GTL A;  1TWC A;  4RV0 A;  5FTL A;  3HU3 A;  2VPW A;  2JA5 A;  3DMR A;  1FDI A;  1PQE A;  3GTO A;  4CS0 A;  3GTP A;  2NVX A;  1CZ4 A;  5DYG A;  4KDI A;  5C1B A;  1K83 A;  4KDL A;  1Y5I A;  1R27 A;  2JIQ A;  5EPP A;  2E2H A;  1TWF A;  1TMO A;  2R92 A;  1FDO A;  4GA6 A;  1DMR A;  3OUG A;  3ML1 A;  1SFO A;  3HU2 A;  1Y1V A;  4QIW A;  2WAQ A;  3TM7 B;  4AZD A;  3O5A A;  2NAP A;  3H0G A;  3QC8 A;  5C18 A;  2V3V A;  1IW7 D;  3IR7 A;  1WCM A;  1DMS A;  2KI8 A;  3GTQ A;  1E32 A;  1KQG A;  1PQF A;  1PT0 A;  2JIO A;  2E7Z A;  3CQZ A;  4CRY G;  3TIW A;  1WLF A;  4DMR A;  1ZC1 A;  1YLE A;  1E60 A;  2E2I A;  2B63 A;  4C2M A;  1PYU B;  1H5N A;  3HKZ A;  2C45 A;  1G8K A;  1PQH A;  1TWH A;  2PMZ A;  1H0H A;  1Y1W A;  4AYB A;  3IR6 A;  2JA7 A;  1Q16 A;  1PYQ A;  1QDN A;  1TWA A;  3GTJ A;  1QCS A;  1E18 A;  2JIM A;  1CZ5 A;  3CF2 A;  2JIR A;  1PPY A;  4GA5 A;  3GTK A;  2NYA A;  2JA6 A;  5T5I D;  1TWG A;  4KOD A;  4D7Z B;  2EEO B;  3QQ8 A;  1S3S A;  2VUM A;  2V45 A;  1UHD A;  2VPY A;  2YUJ A;  1AA6 A;  5FTN A;  1EU1 A;  3GTM A;  1I3Q A;  2DMR A;  1R9T A;  4KO8 A;  2R93 A;  3IR5 A;  5GLF A;  2NVY A;  1E5V A;  2VPZ A;  1G8J A;  1OGY A; 
#chains in the Genus database with same CATH topology
 1UHE A;  4AON B;  2R7Z A;  5FTK A;  1R7R A;  2Q18 X;  3X2N A;  3GTG A;  5FTM A;  1PT1 A;  1ZYR D;  3M3G A;  2PJH B;  1VC3 B;  4JS7 A;  3QWZ A;  2G5D A;  5FTJ A;  3CZB A;  2YU9 A;  2Q1A X;  1E61 A;  2Y0S A;  1Y4Z A;  2KY9 A;  2IV2 X;  3QQ7 A;  2VPX A;  5B6C A;  3FPR A;  5T5M D;  5EQJ B;  4FG4 A;  2JIP A;  4KLN A;  2WB1 A;  1AW8 B;  1SIW A;  4AAY A;  1KQF A;  2JV2 A;  3X2M A;  4AOK B;  3PLX B;  3HU1 A;  5DYI A;  4CRZ A;  1CR5 A;  3FKI A;  1I50 A;  3GTL A;  2Q1D X;  2Q1C X;  1TWC A;  4RV0 A;  5FTL A;  2AE0 X;  1YNJ D;  2VPW A;  3HU3 A;  2JA5 A;  3DMR A;  2MM0 A;  1FDI A;  2PI8 A;  1PQE A;  4ZM7 A;  3GTO A;  2BH0 A;  4CS0 A;  3GTP A;  2GF7 A;  2NVX A;  1CZ4 A;  5DYG A;  4KDI A;  5C1B A;  1K83 A;  4KDL A;  1Y5I A;  1R27 A;  2QQR A;  2JIQ A;  3SUJ A;  5EPP A;  2E2H A;  4ARC A;  1TWF A;  2PNW A;  1TMO A;  2G6G A;  3X2O A;  2MM2 A;  2R92 A;  3SUL A;  3LGA A;  3ZJT A;  1FDO A;  4ENG A;  4GA6 A;  2LW6 A;  3ENG A;  1DMR A;  3OUG A;  3ML1 A;  1SFO A;  3HU2 A;  1Y1V A;  4QIW A;  2WAQ A;  4JP7 A;  3TM7 B;  4AZD A;  3O5A A;  3FPT A;  3ZJV A;  2NAP A;  1N10 A;  3ZJU A;  3H0G A;  3X2H A;  3QC8 A;  4NOH A;  5C18 A;  2V3V A;  3BQB A;  5D6W A;  3X2K A;  2GFA A;  1L8F A;  1IW7 D;  3IR7 A;  3MB5 A;  5GM9 A;  2Q19 X;  1WCM A;  1DMS A;  2KI8 A;  3GTQ A;  1WC2 A;  3X2G A;  1HD5 A;  1E32 A;  1KQG A;  2PJJ A;  3SUK A;  2ENG A;  3SUM A;  3X2I A;  2XDP A;  1OA9 A;  1PQF A;  2B25 A;  2KQA A;  1PT0 A;  3D30 A;  5D6Y A;  2JIO A;  3X2P A;  3X2J A;  2E7Z A;  3CQZ A;  4CRY G;  3TIW A;  1WLF A;  4DMR A;  2CW0 D;  5CCX A;  1ZC1 A;  1YLE A;  1E60 A;  5CCB A;  3ZGZ A;  2E2I A;  2B63 A;  2A6E D;  4C2M A;  1PYU B;  2A68 D;  1H5N A;  4FFT A;  1O54 A;  3HKZ A;  3FPU A;  2C45 A;  1G8K A;  1PQH A;  1TWH A;  2PMZ A;  1H0H A;  1Y1W A;  4AYB A;  4FIB A;  3IR6 A;  4UC4 A;  4ARI A;  4CQN A;  2A69 D;  2JA7 A;  4AQ7 A;  1Q16 A;  5GLY A;  4L48 A;  1PYQ A;  1QDN A;  1TWA A;  3GTJ A;  1QCS A;  1E18 A;  2JIM A;  3LHD A;  1CZ5 A;  3CF2 A;  5GLX A;  2JIR A;  2QQS A;  1SMY D;  1BW3 A;  1PPY A;  4FER A;  4GA5 A;  3GTK A;  2NYA A;  4AVR A;  2JA6 A;  5T5I D;  1TWG A;  4KOD A;  4D7Z B;  2EEO B;  3QQ8 A;  1S3S A;  4JJO A;  1I9G A;  2PIC A;  2PWY A;  5CD1 A;  2VUM A;  2V45 A;  4FG2 A;  2A6H D;  1UHD A;  5ERG B;  4AS1 A;  2O5J D;  2VPY A;  2YUJ A;  1OA7 A;  5H4U A;  1AA6 A;  3X2L A;  5FTN A;  1EU1 A;  3GTM A;  1I3Q A;  2DMR A;  2HCZ X;  1R9T A;  1BW4 A;  4JCW A;  4KO8 A;  2R93 A;  3IR5 A;  5D6X A;  5GLF A;  2NVY A;  2YVL A;  1YNN D;  2BE5 D;  1E5V A;  2GAE A;  2VPZ A;  4JP6 A;  1G8J A;  1OGY A; 
#chains in the Genus database with same CATH homology
 1UHE A;  4AON B;  2R7Z A;  5FTK A;  1R7R A;  2Q18 X;  3GTG A;  5FTM A;  1PT1 A;  1ZYR D;  5FTJ A;  2PJH B;  1VC3 B;  2Q1A X;  3QWZ A;  2G5D A;  3CZB A;  2YU9 A;  1E61 A;  2Y0S A;  1Y4Z A;  2KY9 A;  2IV2 X;  3QQ7 A;  2VPX A;  5B6C A;  3FPR A;  5T5M D;  5EQJ B;  2JIP A;  4KLN A;  2WB1 A;  1AW8 B;  1SIW A;  4AAY A;  1KQF A;  2JV2 A;  4AOK B;  3PLX B;  3HU1 A;  5DYI A;  4CRZ A;  1CR5 A;  3FKI A;  1I50 A;  3GTL A;  2Q1D X;  2Q1C X;  1TWC A;  4RV0 A;  5FTL A;  2AE0 X;  1YNJ D;  2VPW A;  3HU3 A;  2JA5 A;  3DMR A;  2MM0 A;  1FDI A;  2PI8 A;  1PQE A;  3GTO A;  4CS0 A;  3GTP A;  2GF7 A;  2NVX A;  1CZ4 A;  5DYG A;  4KDI A;  5C1B A;  1K83 A;  4KDL A;  1Y5I A;  1R27 A;  2QQR A;  2JIQ A;  5EPP A;  2E2H A;  4ARC A;  1TWF A;  2PNW A;  1TMO A;  2G6G A;  2MM2 A;  2R92 A;  3LGA A;  3ZJT A;  1FDO A;  4GA6 A;  2LW6 A;  1DMR A;  3OUG A;  3ML1 A;  1SFO A;  3HU2 A;  1Y1V A;  4QIW A;  2WAQ A;  3TM7 B;  4AZD A;  3O5A A;  3FPT A;  3ZJV A;  2NAP A;  3ZJU A;  3H0G A;  3QC8 A;  4NOH A;  5C18 A;  2V3V A;  3BQB A;  5D6W A;  2GFA A;  1IW7 D;  3IR7 A;  3MB5 A;  2Q19 X;  1WCM A;  1DMS A;  2KI8 A;  3GTQ A;  1E32 A;  1KQG A;  2PJJ A;  2XDP A;  5D6Y A;  2B25 A;  1PQF A;  1PT0 A;  2JIO A;  2E7Z A;  3CQZ A;  4CRY G;  3TIW A;  1WLF A;  4DMR A;  2CW0 D;  5CCX A;  1ZC1 A;  1YLE A;  1E60 A;  5CCB A;  3ZGZ A;  2E2I A;  2B63 A;  2A6E D;  4C2M A;  1PYU B;  2A68 D;  1H5N A;  1O54 A;  3HKZ A;  3FPU A;  2C45 A;  1G8K A;  1PQH A;  1TWH A;  2PMZ A;  1H0H A;  1Y1W A;  4AYB A;  4FIB A;  3IR6 A;  4UC4 A;  4ARI A;  4CQN A;  2A69 D;  2JA7 A;  4AQ7 A;  1Q16 A;  1PYQ A;  1QDN A;  1TWA A;  3GTJ A;  1QCS A;  1E18 A;  2JIM A;  3LHD A;  1CZ5 A;  3CF2 A;  2JIR A;  2QQS A;  1SMY D;  1PPY A;  4GA5 A;  3GTK A;  2NYA A;  2JA6 A;  5T5I D;  1TWG A;  4KOD A;  4D7Z B;  2EEO B;  3QQ8 A;  1S3S A;  1I9G A;  2PIC A;  2PWY A;  5CD1 A;  2VUM A;  2V45 A;  2A6H D;  1UHD A;  5ERG B;  4AS1 A;  2O5J D;  2VPY A;  2YUJ A;  1AA6 A;  5FTN A;  1EU1 A;  3GTM A;  1I3Q A;  2DMR A;  1R9T A;  4KO8 A;  2R93 A;  3IR5 A;  5D6X A;  5GLF A;  2NVY A;  2YVL A;  1YNN D;  2BE5 D;  1E5V A;  2GAE A;  2VPZ A;  1G8J A;  1OGY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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