3R3PA

Homing endonuclease i-bth0305i catalytic domain
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
97
structure length
97
Chain Sequence
TTPERRVKEILDEMDIVYFTHHVVEGWNVAFYLGKKLAIEVNGVYWASKQKNVNKDKRKLSELHSKGYRVLTIEDDELNDIDKVKQQIQKFWVTHIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Mobile intron protein
publication title Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family.
pubmed doi rcsb
source organism Bacillus phage 0305phi8-36
total genus 31
structure length 97
sequence length 97
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-03-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.960.10 Alpha Beta 3-Layer(aba) Sandwich Endonuclease; Chain A VSR Endonuclease 3r3pA00
1ODGA 1CW0A 1VSRA 3R3PA 3HRLA
chains in the Genus database with same CATH superfamily
4GGJA 1RH0A 4H4AA 1RG2A 4A5ZA 1QZQA 5BPIA 4RCTA 4URJA 1JY1A 5LZKA 1XDPA 1RFFA 1F0IA 2O8RA 1RGTA 5BOXA 4GEMA 3HSIA 2ZE4A 3SQ5A 1V0TA 1V0YA 4GELA 5BPDA 1CW0A 1NOPA 3R3PA 2F5TX 3SQ7A 3QPHA 4GGKA 1V0RA 1BYSA 1V0SA 1VSRA 2ZE9A 3HRLA 3SQ3A 5BQTA 1RFIA 1RG1A 2C1LA 1V0VA 1Q32A 1ODGA 1V0UA 2YMBA 3SQ8A 1BYRA 4GENA 1RGUA 1XDOA 1MU9A 1MU7A 1V0WA
chains in the Genus database with same CATH topology
1ODGA 1CW0A 1VSRA 3R3PA 3HRLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ODG A;  1CW0 A;  1VSR A;  3R3P A;  3HRL A; 
#chains in the Genus database with same CATH topology
 4GGJ A;  1RH0 A;  4H4A A;  1RG2 A;  4A5Z A;  1QZQ A;  5BPI A;  4RCT A;  4URJ A;  1JY1 A;  5LZK A;  1XDP A;  1RFF A;  1F0I A;  2O8R A;  1RGT A;  5BOX A;  4GEM A;  3HSI A;  2ZE4 A;  3SQ5 A;  1V0T A;  1V0Y A;  4GEL A;  5BPD A;  1CW0 A;  1NOP A;  3R3P A;  2F5T X;  3SQ7 A;  3QPH A;  4GGK A;  1V0R A;  1BYS A;  1V0S A;  1VSR A;  2ZE9 A;  3HRL A;  3SQ3 A;  5BQT A;  1RFI A;  1RG1 A;  2C1L A;  1V0V A;  1Q32 A;  1ODG A;  1V0U A;  2YMB A;  3SQ8 A;  1BYR A;  4GEN A;  1RGU A;  1XDO A;  1MU9 A;  1MU7 A;  1V0W A; 
#chains in the Genus database with same CATH homology
 1ODG A;  1CW0 A;  1VSR A;  3R3P A;  3HRL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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