3R4ZA

Crystal structure of alpha-neoagarobiose hydrolase (alpha-nabh) in complex with alpha-d-galactopyranose from saccharophagus degradans 2-40
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
362
structure length
358
Chain Sequence
KLSKASLRAIERGYDEKGPEWLFEFDITPLKGDLAYEEGVIRRDPSAVLKVDDEYHVWYTKGEGETVGFGSDNPEDKVFPWDKTEVWHATSKDKITWKEIGPAIQRGAAGAYDDRAVFTPEVLRHNGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKSDAPILSPENDGVWDTDEDNRFLVKEKGSFDSHKVHDPCLMFFNNRFYLYYKGETMGESMNMGGREIKHGVAIADSPLGPYTKSEYNPITNSGHEVAVWPYKGGMATMLTTDGPEKNTCQWAEDGINFDIMSHIKGAPEAVGFFRPDDPISGIEWGLSHKYDASWNWNYLCFFKTRRQVLDAGSYQQTGDSGAVHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Glycosyl hydrolase family 32, N terminal
publication title Crystal structure of a key enzyme in the agarolytic pathway, alpha-neoagarobiose hydrolase from Saccharophagus degradans 2-40
pubmed doi rcsb
source organism Saccharophagus degradans
total genus 87
structure length 358
sequence length 362
chains with identical sequence B
ec nomenclature ec 3.2.1.-:
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3r4zA00
3AKHA 4FFGA 3TAWA 2X8FA 3C2UA 3VSFA 3PIGA 5FK8A 3AKFA 3R4ZA 4FFIA 1Y4WA 2AEYA 4KMIA 3NQHA 3LFIA 4N1IA 5GLQA 2EXKA 1YRZA 1Y9GA 4N2ZA 3LEMA 2EXHA 3C7OA 3P2NA 5GLPA 3UGGA 1GYDB 3VSSA 3ZXKA 3U75A 5C0PA 5GLOA 5GLMA 3QEEA 4PVAA 3WMYA 4COTA 2QQVA 5B6TA 3KF3A 5FMCA 4U6BA 4UDIA 3ZXJA 3UGHA 1Y9MA 3LIHA 1PT2A 3C7EA 2AC1A 4U6DA 3BYKA 3WPUA 3WPZA 5JOXA 3R4YA 3C7GA 1W2TA 3AKGA 4N4BA 3PIJA 3LIGA 3OM6A 2B4WA 3LDRA 3BYJA 1UYPA 4UDJA 5JOYA 2VDTA 5A7VB 3WN2A 3R67A 5FIXA 3U14A 4N2RA 5FMBA 3D60A 4D47A 4PVIA 3D61A 1YIFA 2OXBA 1GYHA 2EXIA 5FKBA 4FFHA 3AKIA 3D5YA 5ANNA 5FK7A 1ST8A 5A8CA 5GLRA 4O8PA 5AYCA 4AK7A 3QEFA 4UDGA 3WPYA 5FLWA 5B6SA 3VT2A 2YFRA 4KCBA 5GLLA 2QQWA 1W18A 3SC7X 1Y7BA 3VT1A 5JOZA 5A7VA 4AK6A 2EXJA 5AY9A 2X8TA 1YI7A 4UDKE 2XQRA 4KC7A 3QZ4A 3VSRA 3BYNA 3VT0A 3WN0A 4O8NA 3QEDA 3OM7A 4MLGA 3WMZA 4FFFA 1OYGA 1GYEB 3UGFA 3QC2A 3WN1A 4ONZA 5FMDA 3RWKX 4EQVA 4AK5A 4KCAA 3CU9A 3OM2A 3C7HA 2YFSA 5AYEA 3WATA 4UDKA 1VKDA 4NOVA 3OM5A 3K1UA 3WASA 2QQUA 3KF5A 5GLKA 3ZXLA 3BYLA 3WAUA 3LV4A 3D5ZA 2ADEA 1WL7A 4O8OA 5AYDA 3C7FA 3KSTA 3LF7A 3LDKA 1UV4A 2X8SA 3WPVA 5GLNA 3OM4A 5JOWA 5A8DA 3VSZA 4QQSA 2AEZA 5FKCA 4KC8A 2ADDA 2YFTA
chains in the Genus database with same CATH superfamily
3AKHA 4FFGA 3TAWA 2X8FA 3C2UA 3VSFA 3PIGA 5FK8A 3AKFA 3R4ZA 4FFIA 1Y4WA 2AEYA 4KMIA 3NQHA 3LFIA 4N1IA 5GLQA 2EXKA 1YRZA 1Y9GA 4N2ZA 3LEMA 2EXHA 3C7OA 3P2NA 5GLPA 3UGGA 1GYDB 3VSSA 3ZXKA 3U75A 5C0PA 5GLOA 5GLMA 3QEEA 4PVAA 3WMYA 4COTA 2QQVA 5B6TA 3KF3A 5FMCA 4U6BA 4UDIA 3ZXJA 3UGHA 1Y9MA 3LIHA 1PT2A 3C7EA 2AC1A 4U6DA 3BYKA 3WPUA 3WPZA 5JOXA 3R4YA 3C7GA 1W2TA 3AKGA 4N4BA 3PIJA 3LIGA 3OM6A 2B4WA 3LDRA 3BYJA 1UYPA 4UDJA 5JOYA 2VDTA 1TL2A 5A7VB 3WN2A 3R67A 5FIXA 3U14A 4N2RA 5C2MA 5FMBA 3D60A 4D47A 4PVIA 3D61A 1YIFA 2OXBA 1GYHA 2EXIA 5FKBA 4FFHA 3AKIA 3D5YA 5ANNA 5FK7A 1ST8A 5A8CA 5GLRA 4O8PA 5AYCA 4AK7A 3QEFA 4UDGA 3WPYA 5FLWA 5B6SA 3VT2A 2YFRA 4KCBA 5GLLA 2QQWA 1W18A 3SC7X 1Y7BA 3VT1A 5JOZA 5A7VA 4AK6A 2EXJA 5AY9A 2X8TA 1YI7A 4UDKE 2XQRA 4KC7A 3QZ4A 3VSRA 3BYNA 3VT0A 3WN0A 4O8NA 3QEDA 3OM7A 4MLGA 3WMZA 4FFFA 1OYGA 1GYEB 3UGFA 3QC2A 3WN1A 4ONZA 5FMDA 3RWKX 4EQVA 4AK5A 4KCAA 3CU9A 3C7HA 3OM2A 2YFSA 5AYEA 3WATA 4UDKA 1VKDA 4NOVA 3OM5A 3K1UA 3WASA 2QQUA 3KF5A 5GLKA 3ZXLA 3BYLA 3WAUA 3LV4A 3D5ZA 2ADEA 1WL7A 4O8OA 5AYDA 3C7FA 3KSTA 3LF7A 3LDKA 1UV4A 2X8SA 3WPVA 5GLNA 3OM4A 5JOWA 5A8DA 3VSZA 4QQSA 2AEZA 5FKCA 4KC8A 2ADDA 2YFTA
chains in the Genus database with same CATH topology
3AKHA 4FFGA 3TAWA 2X8FA 3C2UA 3VSFA 3PIGA 5FK8A 3AKFA 3R4ZA 4FFIA 1Y4WA 2AEYA 4KMIA 3NQHA 3LFIA 4N1IA 5GLQA 2EXKA 1YRZA 1Y9GA 4N2ZA 3LEMA 2EXHA 3C7OA 3P2NA 5GLPA 3UGGA 1GYDB 3VSSA 3ZXKA 3U75A 5C0PA 5GLOA 5GLMA 3QEEA 4PVAA 3WMYA 4COTA 2QQVA 5B6TA 3KF3A 5FMCA 4U6BA 4UDIA 3ZXJA 3UGHA 1Y9MA 3LIHA 1PT2A 3C7EA 2AC1A 4U6DA 3BYKA 3WPUA 3WPZA 5JOXA 3R4YA 3C7GA 1W2TA 3AKGA 4N4BA 3PIJA 3LIGA 3OM6A 2B4WA 3LDRA 3BYJA 1UYPA 4UDJA 5JOYA 2VDTA 5A7VB 3WN2A 3R67A 5FIXA 3U14A 4N2RA 5FMBA 3D60A 4D47A 4PVIA 3D61A 1YIFA 2OXBA 1GYHA 2EXIA 5FKBA 4FFHA 3AKIA 3D5YA 5ANNA 5FK7A 1ST8A 5A8CA 5GLRA 4O8PA 5AYCA 4AK7A 3QEFA 4UDGA 3WPYA 5FLWA 5B6SA 3VT2A 2YFRA 4KCBA 5GLLA 2QQWA 1W18A 3SC7X 1Y7BA 3VT1A 5JOZA 5A7VA 4AK6A 2EXJA 5AY9A 2X8TA 1YI7A 4UDKE 2XQRA 4KC7A 3QZ4A 3VSRA 3BYNA 3VT0A 3WN0A 4O8NA 3QEDA 3OM7A 4MLGA 3WMZA 4FFFA 1OYGA 1GYEB 3UGFA 3QC2A 3WN1A 4ONZA 5FMDA 3RWKX 4EQVA 4AK5A 4KCAA 3CU9A 3OM2A 3C7HA 2YFSA 5AYEA 3WATA 4UDKA 1VKDA 4NOVA 3OM5A 3K1UA 3WASA 2QQUA 3KF5A 5GLKA 3ZXLA 3BYLA 3WAUA 3LV4A 3D5ZA 2ADEA 1WL7A 4O8OA 5AYDA 3C7FA 3KSTA 3LF7A 3LDKA 1UV4A 2X8SA 3WPVA 5GLNA 3OM4A 5JOWA 5A8DA 3VSZA 4QQSA 2AEZA 5FKCA 4KC8A 2ADDA 2YFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AKH A;  4FFG A;  3TAW A;  2X8F A;  3C2U A;  3VSF A;  3PIG A;  5FK8 A;  3AKF A;  3R4Z A;  4FFI A;  1Y4W A;  2AEY A;  4KMI A;  3NQH A;  3LFI A;  4N1I A;  5GLQ A;  2EXK A;  1YRZ A;  1Y9G A;  4N2Z A;  3LEM A;  2EXH A;  3C7O A;  3P2N A;  5GLP A;  3UGG A;  1GYD B;  3VSS A;  3ZXK A;  3U75 A;  5C0P A;  5GLO A;  5GLM A;  3QEE A;  4PVA A;  3WMY A;  4COT A;  2QQV A;  5B6T A;  3KF3 A;  5FMC A;  4U6B A;  4UDI A;  3ZXJ A;  3UGH A;  1Y9M A;  3LIH A;  1PT2 A;  3C7E A;  2AC1 A;  4U6D A;  3BYK A;  3WPU A;  3WPZ A;  5JOX A;  3R4Y A;  3C7G A;  1W2T A;  3AKG A;  4N4B A;  3PIJ A;  3LIG A;  3OM6 A;  2B4W A;  3LDR A;  3BYJ A;  1UYP A;  4UDJ A;  5JOY A;  2VDT A;  5A7V B;  3WN2 A;  3R67 A;  5FIX A;  3U14 A;  4N2R A;  5FMB A;  3D60 A;  4D47 A;  4PVI A;  3D61 A;  1YIF A;  2OXB A;  1GYH A;  2EXI A;  5FKB A;  4FFH A;  3AKI A;  3D5Y A;  5ANN A;  5FK7 A;  1ST8 A;  5A8C A;  5GLR A;  4O8P A;  5AYC A;  4AK7 A;  3QEF A;  4UDG A;  3WPY A;  5FLW A;  5B6S A;  3VT2 A;  2YFR A;  4KCB A;  5GLL A;  2QQW A;  1W18 A;  3SC7 X;  1Y7B A;  3VT1 A;  5JOZ A;  5A7V A;  4AK6 A;  2EXJ A;  5AY9 A;  2X8T A;  1YI7 A;  4UDK E;  2XQR A;  4KC7 A;  3QZ4 A;  3VSR A;  3BYN A;  3VT0 A;  3WN0 A;  4O8N A;  3QED A;  3OM7 A;  4MLG A;  3WMZ A;  4FFF A;  1OYG A;  1GYE B;  3UGF A;  3QC2 A;  3WN1 A;  4ONZ A;  5FMD A;  3RWK X;  4EQV A;  4AK5 A;  4KCA A;  3CU9 A;  3OM2 A;  3C7H A;  2YFS A;  5AYE A;  3WAT A;  4UDK A;  1VKD A;  4NOV A;  3OM5 A;  3K1U A;  3WAS A;  2QQU A;  3KF5 A;  5GLK A;  3ZXL A;  3BYL A;  3WAU A;  3LV4 A;  3D5Z A;  2ADE A;  1WL7 A;  4O8O A;  5AYD A;  3C7F A;  3KST A;  3LF7 A;  3LDK A;  1UV4 A;  2X8S A;  3WPV A;  5GLN A;  3OM4 A;  5JOW A;  5A8D A;  3VSZ A;  4QQS A;  2AEZ A;  5FKC A;  4KC8 A;  2ADD A;  2YFT A; 
#chains in the Genus database with same CATH topology
 3AKH A;  4FFG A;  3TAW A;  2X8F A;  3C2U A;  3VSF A;  3PIG A;  5FK8 A;  3AKF A;  3R4Z A;  4FFI A;  1Y4W A;  2AEY A;  4KMI A;  3NQH A;  3LFI A;  4N1I A;  5GLQ A;  2EXK A;  1YRZ A;  1Y9G A;  4N2Z A;  3LEM A;  2EXH A;  3C7O A;  3P2N A;  5GLP A;  3UGG A;  1GYD B;  3VSS A;  3ZXK A;  3U75 A;  5C0P A;  5GLO A;  5GLM A;  3QEE A;  4PVA A;  3WMY A;  4COT A;  2QQV A;  5B6T A;  3KF3 A;  5FMC A;  4U6B A;  4UDI A;  3ZXJ A;  3UGH A;  1Y9M A;  3LIH A;  1PT2 A;  3C7E A;  2AC1 A;  4U6D A;  3BYK A;  3WPU A;  3WPZ A;  5JOX A;  3R4Y A;  3C7G A;  1W2T A;  3AKG A;  4N4B A;  3PIJ A;  3LIG A;  3OM6 A;  2B4W A;  3LDR A;  3BYJ A;  1UYP A;  4UDJ A;  5JOY A;  2VDT A;  1TL2 A;  5A7V B;  3WN2 A;  3R67 A;  5FIX A;  3U14 A;  4N2R A;  5C2M A;  5FMB A;  3D60 A;  4D47 A;  4PVI A;  3D61 A;  1YIF A;  2OXB A;  1GYH A;  2EXI A;  5FKB A;  4FFH A;  3AKI A;  3D5Y A;  5ANN A;  5FK7 A;  1ST8 A;  5A8C A;  5GLR A;  4O8P A;  5AYC A;  4AK7 A;  3QEF A;  4UDG A;  3WPY A;  5FLW A;  5B6S A;  3VT2 A;  2YFR A;  4KCB A;  5GLL A;  2QQW A;  1W18 A;  3SC7 X;  1Y7B A;  3VT1 A;  5JOZ A;  5A7V A;  4AK6 A;  2EXJ A;  5AY9 A;  2X8T A;  1YI7 A;  4UDK E;  2XQR A;  4KC7 A;  3QZ4 A;  3VSR A;  3BYN A;  3VT0 A;  3WN0 A;  4O8N A;  3QED A;  3OM7 A;  4MLG A;  3WMZ A;  4FFF A;  1OYG A;  1GYE B;  3UGF A;  3QC2 A;  3WN1 A;  4ONZ A;  5FMD A;  3RWK X;  4EQV A;  4AK5 A;  4KCA A;  3CU9 A;  3C7H A;  3OM2 A;  2YFS A;  5AYE A;  3WAT A;  4UDK A;  1VKD A;  4NOV A;  3OM5 A;  3K1U A;  3WAS A;  2QQU A;  3KF5 A;  5GLK A;  3ZXL A;  3BYL A;  3WAU A;  3LV4 A;  3D5Z A;  2ADE A;  1WL7 A;  4O8O A;  5AYD A;  3C7F A;  3KST A;  3LF7 A;  3LDK A;  1UV4 A;  2X8S A;  3WPV A;  5GLN A;  3OM4 A;  5JOW A;  5A8D A;  3VSZ A;  4QQS A;  2AEZ A;  5FKC A;  4KC8 A;  2ADD A;  2YFT A; 
#chains in the Genus database with same CATH homology
 3AKH A;  4FFG A;  3TAW A;  2X8F A;  3C2U A;  3VSF A;  3PIG A;  5FK8 A;  3AKF A;  3R4Z A;  4FFI A;  1Y4W A;  2AEY A;  4KMI A;  3NQH A;  3LFI A;  4N1I A;  5GLQ A;  2EXK A;  1YRZ A;  1Y9G A;  4N2Z A;  3LEM A;  2EXH A;  3C7O A;  3P2N A;  5GLP A;  3UGG A;  1GYD B;  3VSS A;  3ZXK A;  3U75 A;  5C0P A;  5GLO A;  5GLM A;  3QEE A;  4PVA A;  3WMY A;  4COT A;  2QQV A;  5B6T A;  3KF3 A;  5FMC A;  4U6B A;  4UDI A;  3ZXJ A;  3UGH A;  1Y9M A;  3LIH A;  1PT2 A;  3C7E A;  2AC1 A;  4U6D A;  3BYK A;  3WPU A;  3WPZ A;  5JOX A;  3R4Y A;  3C7G A;  1W2T A;  3AKG A;  4N4B A;  3PIJ A;  3LIG A;  3OM6 A;  2B4W A;  3LDR A;  3BYJ A;  1UYP A;  4UDJ A;  5JOY A;  2VDT A;  5A7V B;  3WN2 A;  3R67 A;  5FIX A;  3U14 A;  4N2R A;  5FMB A;  3D60 A;  4D47 A;  4PVI A;  3D61 A;  1YIF A;  2OXB A;  1GYH A;  2EXI A;  5FKB A;  4FFH A;  3AKI A;  3D5Y A;  5ANN A;  5FK7 A;  1ST8 A;  5A8C A;  5GLR A;  4O8P A;  5AYC A;  4AK7 A;  3QEF A;  4UDG A;  3WPY A;  5FLW A;  5B6S A;  3VT2 A;  2YFR A;  4KCB A;  5GLL A;  2QQW A;  1W18 A;  3SC7 X;  1Y7B A;  3VT1 A;  5JOZ A;  5A7V A;  4AK6 A;  2EXJ A;  5AY9 A;  2X8T A;  1YI7 A;  4UDK E;  2XQR A;  4KC7 A;  3QZ4 A;  3VSR A;  3BYN A;  3VT0 A;  3WN0 A;  4O8N A;  3QED A;  3OM7 A;  4MLG A;  3WMZ A;  4FFF A;  1OYG A;  1GYE B;  3UGF A;  3QC2 A;  3WN1 A;  4ONZ A;  5FMD A;  3RWK X;  4EQV A;  4AK5 A;  4KCA A;  3CU9 A;  3OM2 A;  3C7H A;  2YFS A;  5AYE A;  3WAT A;  4UDK A;  1VKD A;  4NOV A;  3OM5 A;  3K1U A;  3WAS A;  2QQU A;  3KF5 A;  5GLK A;  3ZXL A;  3BYL A;  3WAU A;  3LV4 A;  3D5Z A;  2ADE A;  1WL7 A;  4O8O A;  5AYD A;  3C7F A;  3KST A;  3LF7 A;  3LDK A;  1UV4 A;  2X8S A;  3WPV A;  5GLN A;  3OM4 A;  5JOW A;  5A8D A;  3VSZ A;  4QQS A;  2AEZ A;  5FKC A;  4KC8 A;  2ADD A;  2YFT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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