3R50A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
153
structure length
153
Chain Sequence
ALQLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
molecule tags Carbohydrate-binding protein
source organism Ipomoea batatas
molecule keywords Ipomoelin
total genus 25
structure length 153
sequence length 153
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r50A00
1UGXA 3R51A 2HYQA 1TOQA 1J4SA 1VBOA 3LL2A 3LL0A 1PXDA 1ZGRA 5J50A 4AKCA 2NUOA 5BN6E 1J4UA 1WS5C 3VZEA 1C3NA 1KU8A 1WS4A 1WS4C 5J4XA 4AK4A 3AQGA 4PIFA 5J4TA 1UH0A 1C3KA 3O44A 1UGWA 1UH1A 2GUDA 3R52A 3MIUA 1JOTA 1KUJA 4WOGA 5J51A 2GUXA 3P8SA 3LM1A 5JM1A 4AKDA 3VZFA 1UGYA 1XXQA 4R6NA 2GTYA 1J4TA 2NU5A 4R6PA 2BMZA 1UGWC 2HYRA 4PIKA 4AKBA 2GUCA 5EXGA 4DDNA 4GX7A 1ZGSA 1JACA 3LL1A 2BMYA 3APAA 4R6OA 4MQ0A 3LKYA 1UGYC 1XEZA 3WOBA 1OUWA 4R6QA 3R50A 1XXRA 3LLZA 4R6RA 3WOCA 2GUEA 1WS5A 3VZGA 2JZ4A 4PITA 3MITA 1C3MA 1VBPA 2BN0A 3LLYA 1TP8A 5AV7A 3VY7A 3MIVA 4PIUA 3VY6A 1X1VA 1M26A
chains in the Genus database with same CATH superfamily
1UGXA 3R51A 2HYQA 1TOQA 1J4SA 1VBOA 3LL2A 1JI6A 3LL0A 1PXDA 1ZGRA 2QP2A 5J50A 4AKCA 2NUOA 5BN6E 4ARYA 1J4UA 1WS5C 3VZEA 1C3NA 1KU8A 1WS4A 2C9KA 1WS4C 5J4XA 4AK4A 3AQGA 4PIFA 5J4TA 1UH0A 1C3KA 3O44A 1UGWA 1UH1A 1DLCA 2GUDA 3R52A 3MIUA 1VMOA 1JOTA 4QX3A 1KUJA 4WOGA 1W99A 4D8MA 5J51A 2GUXA 3P8SA 3LM1A 5JM1A 4AKDA 3VZFA 4ARXA 1UGYA 1XXQA 4R6NA 2GTYA 1J4TA 2NU5A 1CIYA 4R6PA 1UGWC 2HYRA 4PIKA 4QX0A 4AKBA 2GUCA 5EXGA 4DDNA 4GX7A 1M26A 1ZGSA 1JACA 3LL1A 2BMYA 3APAA 4R6OA 4QX1A 4MQ0A 3LKYA 1UGYC 1XEZA 3EB7A 3WOBA 1OUWA 4R6QA 3R50A 3LLZA 1XXRA 4R6RA 3WOCA 2GUEA 4QX2A 3TOWA 1WS5A 3VZGA 2JZ4A 4PITA 3MITA 1C3MA 1VBPA 2BN0A 3LLYA 4MOAA 1TP8A 5AV7A 1I5PA 4W8JA 3VY7A 3MIVA 4PIUA 2BMZA 1X1VA 3VY6A
chains in the Genus database with same CATH topology
1UGXA 3R51A 2HYQA 1TOQA 1J4SA 1VBOA 3LL2A 3LL0A 1PXDA 1ZGRA 5J50A 4AKCA 2NUOA 5BN6E 1J4UA 1WS5C 3VZEA 1C3NA 1KU8A 1WS4A 1WS4C 5J4XA 4AK4A 3AQGA 4PIFA 5J4TA 1UH0A 1C3KA 3O44A 1UGWA 1UH1A 2GUDA 3R52A 3MIUA 1JOTA 1KUJA 4WOGA 5J51A 2GUXA 3P8SA 3LM1A 5JM1A 4AKDA 3VZFA 1UGYA 1XXQA 4R6NA 2GTYA 1J4TA 2NU5A 4R6PA 2BMZA 1UGWC 2HYRA 4PIKA 4AKBA 2GUCA 5EXGA 4DDNA 4GX7A 1ZGSA 1JACA 3LL1A 2BMYA 3APAA 4R6OA 4MQ0A 3LKYA 1UGYC 1XEZA 3WOBA 1OUWA 4R6QA 3R50A 1XXRA 3LLZA 4R6RA 3WOCA 2GUEA 1WS5A 3VZGA 2JZ4A 4PITA 3MITA 1C3MA 1VBPA 2BN0A 3LLYA 1TP8A 5AV7A 3VY7A 3MIVA 4PIUA 3VY6A 1X1VA 1M26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGX A;  3R51 A;  2HYQ A;  1TOQ A;  1J4S A;  1VBO A;  3LL2 A;  3LL0 A;  1PXD A;  1ZGR A;  5J50 A;  4AKC A;  2NUO A;  5BN6 E;  1J4U A;  1WS5 C;  3VZE A;  1C3N A;  1KU8 A;  1WS4 A;  1WS4 C;  5J4X A;  4AK4 A;  3AQG A;  4PIF A;  5J4T A;  1UH0 A;  1C3K A;  3O44 A;  1UGW A;  1UH1 A;  2GUD A;  3R52 A;  3MIU A;  1JOT A;  1KUJ A;  4WOG A;  5J51 A;  2GUX A;  3P8S A;  3LM1 A;  5JM1 A;  4AKD A;  3VZF A;  1UGY A;  1XXQ A;  4R6N A;  2GTY A;  1J4T A;  2NU5 A;  4R6P A;  2BMZ A;  1UGW C;  2HYR A;  4PIK A;  4AKB A;  2GUC A;  5EXG A;  4DDN A;  4GX7 A;  1ZGS A;  1JAC A;  3LL1 A;  2BMY A;  3APA A;  4R6O A;  4MQ0 A;  3LKY A;  1UGY C;  1XEZ A;  3WOB A;  1OUW A;  4R6Q A;  3R50 A;  1XXR A;  3LLZ A;  4R6R A;  3WOC A;  2GUE A;  1WS5 A;  3VZG A;  2JZ4 A;  4PIT A;  3MIT A;  1C3M A;  1VBP A;  2BN0 A;  3LLY A;  1TP8 A;  5AV7 A;  3VY7 A;  3MIV A;  4PIU A;  3VY6 A;  1X1V A;  1M26 A; 
#chains in the Genus database with same CATH topology
 1UGX A;  3R51 A;  2HYQ A;  1TOQ A;  1J4S A;  1VBO A;  3LL2 A;  1JI6 A;  3LL0 A;  1PXD A;  1ZGR A;  2QP2 A;  5J50 A;  4AKC A;  2NUO A;  5BN6 E;  4ARY A;  1J4U A;  1WS5 C;  3VZE A;  1C3N A;  1KU8 A;  1WS4 A;  2C9K A;  1WS4 C;  5J4X A;  4AK4 A;  3AQG A;  4PIF A;  5J4T A;  1UH0 A;  1C3K A;  3O44 A;  1UGW A;  1UH1 A;  1DLC A;  2GUD A;  3R52 A;  3MIU A;  1VMO A;  1JOT A;  4QX3 A;  1KUJ A;  4WOG A;  1W99 A;  4D8M A;  5J51 A;  2GUX A;  3P8S A;  3LM1 A;  5JM1 A;  4AKD A;  3VZF A;  4ARX A;  1UGY A;  1XXQ A;  4R6N A;  2GTY A;  1J4T A;  2NU5 A;  1CIY A;  4R6P A;  1UGW C;  2HYR A;  4PIK A;  4QX0 A;  4AKB A;  2GUC A;  5EXG A;  4DDN A;  4GX7 A;  1M26 A;  1ZGS A;  1JAC A;  3LL1 A;  2BMY A;  3APA A;  4R6O A;  4QX1 A;  4MQ0 A;  3LKY A;  1UGY C;  1XEZ A;  3EB7 A;  3WOB A;  1OUW A;  4R6Q A;  3R50 A;  3LLZ A;  1XXR A;  4R6R A;  3WOC A;  2GUE A;  4QX2 A;  3TOW A;  1WS5 A;  3VZG A;  2JZ4 A;  4PIT A;  3MIT A;  1C3M A;  1VBP A;  2BN0 A;  3LLY A;  4MOA A;  1TP8 A;  5AV7 A;  1I5P A;  4W8J A;  3VY7 A;  3MIV A;  4PIU A;  2BMZ A;  1X1V A;  3VY6 A; 
#chains in the Genus database with same CATH homology
 1UGX A;  3R51 A;  2HYQ A;  1TOQ A;  1J4S A;  1VBO A;  3LL2 A;  3LL0 A;  1PXD A;  1ZGR A;  5J50 A;  4AKC A;  2NUO A;  5BN6 E;  1J4U A;  1WS5 C;  3VZE A;  1C3N A;  1KU8 A;  1WS4 A;  1WS4 C;  5J4X A;  4AK4 A;  3AQG A;  4PIF A;  5J4T A;  1UH0 A;  1C3K A;  3O44 A;  1UGW A;  1UH1 A;  2GUD A;  3R52 A;  3MIU A;  1JOT A;  1KUJ A;  4WOG A;  5J51 A;  2GUX A;  3P8S A;  3LM1 A;  5JM1 A;  4AKD A;  3VZF A;  1UGY A;  1XXQ A;  4R6N A;  2GTY A;  1J4T A;  2NU5 A;  4R6P A;  2BMZ A;  1UGW C;  2HYR A;  4PIK A;  4AKB A;  2GUC A;  5EXG A;  4DDN A;  4GX7 A;  1ZGS A;  1JAC A;  3LL1 A;  2BMY A;  3APA A;  4R6O A;  4MQ0 A;  3LKY A;  1UGY C;  1XEZ A;  3WOB A;  1OUW A;  4R6Q A;  3R50 A;  1XXR A;  3LLZ A;  4R6R A;  3WOC A;  2GUE A;  1WS5 A;  3VZG A;  2JZ4 A;  4PIT A;  3MIT A;  1C3M A;  1VBP A;  2BN0 A;  3LLY A;  1TP8 A;  5AV7 A;  3VY7 A;  3MIV A;  4PIU A;  3VY6 A;  1X1V A;  1M26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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