3R5LA

Structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
116
structure length
116
Chain Sequence
GLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Deazaflavin-dependent nitroreductase
publication title Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 27
structure length 116
sequence length 116
ec nomenclature ec 1.-.-.-:
pdb deposition date 2011-03-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3r5lA00
2QCKA 3R5WA 3U5WA 3R5PA 2D36A 3RH7A 1NRGA 4F07A 1USCA 1G77A 2Q9KA 3ZOFA 2I51A 3ZOHA 3R5RA 4Z85A 3AMFA 2GJGA 1XXOA 3DMBA 2ARZA 3H96A 5ESCA 2X1JA 3E4VA 3IN6A 1W9AA 2A2JA 1YLNA 4N7RC 3U0IA 2I02A 1I0RA 2ED4A 5JABA 2IMLA 2OL5A 1WGBA 2RE7A 3FKHA 1CI0A 2PTFA 2AQ6A 2OU5A 3R5LA 2NR4A 1G76A 4XHYA 3A20A 3BA3A 1WLKA 1JNWA 4QVBA 2HQ9A 2HTIA 1G78A 4HMWA 4HMTA 3HY8A 4HMXA 1XHNA 2HTDA 3VY2A 1RFEA 1DNLA 1WLIA 2R6VA 3ZODA 3VYAA 2E83A 1W3OA 2HQ7A 3KYFA 1USFA 2ECRA 2D5MA 3DNHA 1WV4A 2FG9A 3ZOEA 1I0SA 3A6QA 4HMVA 3ZOGA 4L82A 3GASA 3CP3A 4XJ2A 1TY9A 3BPKA 4YWNA 3U34A 2RDEA 3PFTA 2ECUA 3HMZA 3FGEA 3F7EA 4YBNA 2X1KA 3VY5A 3SWJA 2QEAA 4HX6A 3R5ZA 1FLMA 2FHQA 1EJEA 1AXJA 3K86A 1G79A 3CB0A 5CHOA 3K87A 2FURA 2IG6A 4HMUA 5BNCA 3R5YA 4ZKYA 2D37A 2VPAA 1VL7A 1W3QA 1W3PA 1T9MA 1Y30A 3DB0A 2HHZA 1YOAA 3K88A 3KYGA 3NFWA 1RZ1A 3B5MA 4IRAA 2D38A 3BNKA 3EC6A 2R0XA 4R82A 2ASFA 3U35A 4HMSA 3AWHA 4Y9IA 3TGVA 3ZOCA 1RZ0A 2IABA 5CHEC 1W3RA 3A6RA
chains in the Genus database with same CATH superfamily
2QCKA 4MTKA 3R5WA 3U5WA 3R5PA 2D36A 3RH7A 1NRGA 4F07A 1USCA 1G77A 2Q9KA 3ZOFA 2I51A 3ZOHA 3R5RA 4Z85A 3AMFA 2GJGA 1XXOA 3DMBA 2ARZA 3H96A 5ESCA 2X1JA 3E4VA 3IN6A 1W9AA 2A2JA 1YLNA 4N7RC 3U0IA 2I02A 2L1TA 1I0RA 2ED4A 5JABA 2IMLA 4W64A 2OL5A 1WGBA 1Y12A 2RE7A 3FKHA 1CI0A 2PTFA 2AQ6A 2OU5A 3R5LA 2NR4A 1G76A 4XHYA 3A20A 3BA3A 1WLKA 1JNWA 4QVBA 2HQ9A 2HTIA 1G78A 4HMWA 4HMTA 3HY8A 2P5ZX 4HMXA 1XHNA 2GUJA 2HTDA 3VY2A 1RFEA 1DNLA 1WLIA 2R6VA 3ZODA 3VYAA 2E83A 1W3OA 2HQ7A 3KYFA 1USFA 2ECRA 2D5MA 3DNHA 1WV4A 2FG9A 3ZOEA 1I0SA 3A6QA 4HMVA 3ZOGA 4L82A 3GASA 3CP3A 4XJ2A 1TY9A 3BPKA 4YWNA 3U34A 4TV4A 2RDEA 3PFTA 2ECUA 3HMZA 3FGEA 3F7EA 4YBNA 2X1KA 3VY5A 4HKHA 3SWJA 2QEAA 4HX6A 3R5ZA 1FLMA 2FHQA 1EJEA 1AXJA 3K86A 1G79A 3CB0A 5CHOA 3K87A 2K4QA 2FURA 2IG6A 4HMUA 5BNCA 3R5YA 4ZKYA 2D37A 2VPAA 1VL7A 3HE1A 1W3QA 1W3PA 1T9MA 1Y30A 3DB0A 2HHZA 4UHVA 1YOAA 3EAAA 3K88A 3KYGA 3NFWA 1RZ1A 3B5MA 4IRAA 2D38A 3BNKA 3EC6A 2R0XA 4R82A 3V4HA 2ASFA 3U35A 4HMSA 3AWHA 4Y9IA 3TGVA 3ZOCA 1RZ0A 2IABA 5CHEC 1W3RA 3A6RA
chains in the Genus database with same CATH topology
2QCKA 3R5WA 3U5WA 3R5PA 2D36A 3RH7A 1NRGA 4F07A 1USCA 1G77A 2Q9KA 3ZOFA 2I51A 3ZOHA 3R5RA 4Z85A 3AMFA 2GJGA 1XXOA 3DMBA 2ARZA 3H96A 5ESCA 2X1JA 3E4VA 3IN6A 1W9AA 2A2JA 1YLNA 4N7RC 3U0IA 2I02A 1I0RA 2ED4A 5JABA 2IMLA 2OL5A 1WGBA 2RE7A 3FKHA 1CI0A 2PTFA 2AQ6A 2OU5A 3R5LA 2NR4A 1G76A 4XHYA 3A20A 3BA3A 1WLKA 1JNWA 4QVBA 2HQ9A 2HTIA 1G78A 4HMWA 4HMTA 3HY8A 4HMXA 1XHNA 2HTDA 3VY2A 1RFEA 1DNLA 1WLIA 2R6VA 3ZODA 3VYAA 2E83A 1W3OA 2HQ7A 3KYFA 1USFA 2ECRA 2D5MA 3DNHA 1WV4A 2FG9A 3ZOEA 1I0SA 3A6QA 4HMVA 3ZOGA 4L82A 3GASA 3CP3A 4XJ2A 1TY9A 3BPKA 4YWNA 3U34A 2RDEA 3PFTA 2ECUA 3HMZA 3FGEA 3F7EA 4YBNA 2X1KA 3VY5A 3SWJA 2QEAA 4HX6A 3R5ZA 1FLMA 2FHQA 1EJEA 1AXJA 3K86A 1G79A 3CB0A 5CHOA 3K87A 2FURA 2IG6A 4HMUA 5BNCA 3R5YA 4ZKYA 2D37A 2VPAA 1VL7A 1W3QA 1W3PA 1T9MA 1Y30A 3DB0A 2HHZA 1YOAA 3K88A 3KYGA 3NFWA 1RZ1A 3B5MA 4IRAA 2D38A 3BNKA 3EC6A 2R0XA 4R82A 2ASFA 3U35A 4HMSA 3AWHA 4Y9IA 3TGVA 3ZOCA 1RZ0A 2IABA 5CHEC 1W3RA 3A6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QCK A;  3R5W A;  3U5W A;  3R5P A;  2D36 A;  3RH7 A;  1NRG A;  4F07 A;  1USC A;  1G77 A;  2Q9K A;  3ZOF A;  2I51 A;  3ZOH A;  3R5R A;  4Z85 A;  3AMF A;  2GJG A;  1XXO A;  3DMB A;  2ARZ A;  3H96 A;  5ESC A;  2X1J A;  3E4V A;  3IN6 A;  1W9A A;  2A2J A;  1YLN A;  4N7R C;  3U0I A;  2I02 A;  1I0R A;  2ED4 A;  5JAB A;  2IML A;  2OL5 A;  1WGB A;  2RE7 A;  3FKH A;  1CI0 A;  2PTF A;  2AQ6 A;  2OU5 A;  3R5L A;  2NR4 A;  1G76 A;  4XHY A;  3A20 A;  3BA3 A;  1WLK A;  1JNW A;  4QVB A;  2HQ9 A;  2HTI A;  1G78 A;  4HMW A;  4HMT A;  3HY8 A;  4HMX A;  1XHN A;  2HTD A;  3VY2 A;  1RFE A;  1DNL A;  1WLI A;  2R6V A;  3ZOD A;  3VYA A;  2E83 A;  1W3O A;  2HQ7 A;  3KYF A;  1USF A;  2ECR A;  2D5M A;  3DNH A;  1WV4 A;  2FG9 A;  3ZOE A;  1I0S A;  3A6Q A;  4HMV A;  3ZOG A;  4L82 A;  3GAS A;  3CP3 A;  4XJ2 A;  1TY9 A;  3BPK A;  4YWN A;  3U34 A;  2RDE A;  3PFT A;  2ECU A;  3HMZ A;  3FGE A;  3F7E A;  4YBN A;  2X1K A;  3VY5 A;  3SWJ A;  2QEA A;  4HX6 A;  3R5Z A;  1FLM A;  2FHQ A;  1EJE A;  1AXJ A;  3K86 A;  1G79 A;  3CB0 A;  5CHO A;  3K87 A;  2FUR A;  2IG6 A;  4HMU A;  5BNC A;  3R5Y A;  4ZKY A;  2D37 A;  2VPA A;  1VL7 A;  1W3Q A;  1W3P A;  1T9M A;  1Y30 A;  3DB0 A;  2HHZ A;  1YOA A;  3K88 A;  3KYG A;  3NFW A;  1RZ1 A;  3B5M A;  4IRA A;  2D38 A;  3BNK A;  3EC6 A;  2R0X A;  4R82 A;  2ASF A;  3U35 A;  4HMS A;  3AWH A;  4Y9I A;  3TGV A;  3ZOC A;  1RZ0 A;  2IAB A;  5CHE C;  1W3R A;  3A6R A; 
#chains in the Genus database with same CATH topology
 2QCK A;  4MTK A;  3R5W A;  3U5W A;  3R5P A;  2D36 A;  3RH7 A;  1NRG A;  4F07 A;  1USC A;  1G77 A;  2Q9K A;  3ZOF A;  2I51 A;  3ZOH A;  3R5R A;  4Z85 A;  3AMF A;  2GJG A;  1XXO A;  3DMB A;  2ARZ A;  3H96 A;  5ESC A;  2X1J A;  3E4V A;  3IN6 A;  1W9A A;  2A2J A;  1YLN A;  4N7R C;  3U0I A;  2I02 A;  2L1T A;  1I0R A;  2ED4 A;  5JAB A;  2IML A;  4W64 A;  2OL5 A;  1WGB A;  1Y12 A;  2RE7 A;  3FKH A;  1CI0 A;  2PTF A;  2AQ6 A;  2OU5 A;  3R5L A;  2NR4 A;  1G76 A;  4XHY A;  3A20 A;  3BA3 A;  1WLK A;  1JNW A;  4QVB A;  2HQ9 A;  2HTI A;  1G78 A;  4HMW A;  4HMT A;  3HY8 A;  2P5Z X;  4HMX A;  1XHN A;  2GUJ A;  2HTD A;  3VY2 A;  1RFE A;  1DNL A;  1WLI A;  2R6V A;  3ZOD A;  3VYA A;  2E83 A;  1W3O A;  2HQ7 A;  3KYF A;  1USF A;  2ECR A;  2D5M A;  3DNH A;  1WV4 A;  2FG9 A;  3ZOE A;  1I0S A;  3A6Q A;  4HMV A;  3ZOG A;  4L82 A;  3GAS A;  3CP3 A;  4XJ2 A;  1TY9 A;  3BPK A;  4YWN A;  3U34 A;  4TV4 A;  2RDE A;  3PFT A;  2ECU A;  3HMZ A;  3FGE A;  3F7E A;  4YBN A;  2X1K A;  3VY5 A;  4HKH A;  3SWJ A;  2QEA A;  4HX6 A;  3R5Z A;  1FLM A;  2FHQ A;  1EJE A;  1AXJ A;  3K86 A;  1G79 A;  3CB0 A;  5CHO A;  3K87 A;  2K4Q A;  2FUR A;  2IG6 A;  4HMU A;  5BNC A;  3R5Y A;  4ZKY A;  2D37 A;  2VPA A;  1VL7 A;  3HE1 A;  1W3Q A;  1W3P A;  1T9M A;  1Y30 A;  3DB0 A;  2HHZ A;  4UHV A;  1YOA A;  3EAA A;  3K88 A;  3KYG A;  3NFW A;  1RZ1 A;  3B5M A;  4IRA A;  2D38 A;  3BNK A;  3EC6 A;  2R0X A;  4R82 A;  3V4H A;  2ASF A;  3U35 A;  4HMS A;  3AWH A;  4Y9I A;  3TGV A;  3ZOC A;  1RZ0 A;  2IAB A;  5CHE C;  1W3R A;  3A6R A; 
#chains in the Genus database with same CATH homology
 2QCK A;  3R5W A;  3U5W A;  3R5P A;  2D36 A;  3RH7 A;  1NRG A;  4F07 A;  1USC A;  1G77 A;  2Q9K A;  3ZOF A;  2I51 A;  3ZOH A;  3R5R A;  4Z85 A;  3AMF A;  2GJG A;  1XXO A;  3DMB A;  2ARZ A;  3H96 A;  5ESC A;  2X1J A;  3E4V A;  3IN6 A;  1W9A A;  2A2J A;  1YLN A;  4N7R C;  3U0I A;  2I02 A;  1I0R A;  2ED4 A;  5JAB A;  2IML A;  2OL5 A;  1WGB A;  2RE7 A;  3FKH A;  1CI0 A;  2PTF A;  2AQ6 A;  2OU5 A;  3R5L A;  2NR4 A;  1G76 A;  4XHY A;  3A20 A;  3BA3 A;  1WLK A;  1JNW A;  4QVB A;  2HQ9 A;  2HTI A;  1G78 A;  4HMW A;  4HMT A;  3HY8 A;  4HMX A;  1XHN A;  2HTD A;  3VY2 A;  1RFE A;  1DNL A;  1WLI A;  2R6V A;  3ZOD A;  3VYA A;  2E83 A;  1W3O A;  2HQ7 A;  3KYF A;  1USF A;  2ECR A;  2D5M A;  3DNH A;  1WV4 A;  2FG9 A;  3ZOE A;  1I0S A;  3A6Q A;  4HMV A;  3ZOG A;  4L82 A;  3GAS A;  3CP3 A;  4XJ2 A;  1TY9 A;  3BPK A;  4YWN A;  3U34 A;  2RDE A;  3PFT A;  2ECU A;  3HMZ A;  3FGE A;  3F7E A;  4YBN A;  2X1K A;  3VY5 A;  3SWJ A;  2QEA A;  4HX6 A;  3R5Z A;  1FLM A;  2FHQ A;  1EJE A;  1AXJ A;  3K86 A;  1G79 A;  3CB0 A;  5CHO A;  3K87 A;  2FUR A;  2IG6 A;  4HMU A;  5BNC A;  3R5Y A;  4ZKY A;  2D37 A;  2VPA A;  1VL7 A;  1W3Q A;  1W3P A;  1T9M A;  1Y30 A;  3DB0 A;  2HHZ A;  1YOA A;  3K88 A;  3KYG A;  3NFW A;  1RZ1 A;  3B5M A;  4IRA A;  2D38 A;  3BNK A;  3EC6 A;  2R0X A;  4R82 A;  2ASF A;  3U35 A;  4HMS A;  3AWH A;  4Y9I A;  3TGV A;  3ZOC A;  1RZ0 A;  2IAB A;  5CHE C;  1W3R A;  3A6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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