3R5LA

Structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
116
structure length
116
Chain Sequence
GLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
molecule keywords Deazaflavin-dependent nitroreductase
total genus 27
structure length 116
sequence length 116
ec nomenclature ec 1.-.-.-:
pdb deposition date 2011-03-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3r5lA00
1XXOA 3B5MA 3AMFA 1I0RA 3SWJA 3K87A 1RZ0A 2A2JA 2ECUA 3H96A 1RFEA 4QVBA 1FLMA 1NRGA 2HQ9A 3R5YA 5CHOA 1WLKA 3HMZA 2HHZA 3RH7A 3R5PA 5ESCA 1RZ1A 1Y30A 3HY8A 4HMVA 2ASFA 2IABA 3ZOGA 3TGVA 2RE7A 1W3RA 2R0XA 3KYFA 3DNHA 2NR4A 4L82A 2X1JA 1WLIA 1WGBA 3A20A 3VYAA 4YBNA 1YOAA 1YLNA 1G78A 4IRAA 3GASA 3FKHA 2HTDA 1AXJA 1G77A 2OU5A 2I51A 1W9AA 1G76A 1W3OA 2IG6A 2X1KA 3U0IA 4ZKYA 3ZOFA 5BNCA 1I0SA 2I02A 1CI0A 4XJ2A 1W3QA 3R5RA 3ZOHA 5CHEC 3ZOEA 1EJEA 1USCA 2FG9A 1DNLA 4F07A 2D36A 2RDEA 4N7RC 2D38A 1G79A 2FURA 3IN6A 3K86A 3U5WA 3A6RA 3AWHA 4HMUA 3U35A 1WV4A 3DB0A 2QEAA 3PFTA 2HTIA 3ZODA 4Y9IA 4Z85A 3VY2A 2QCKA 4HMWA 2E83A 2D37A 1JNWA 2PTFA 3U34A 2GJGA 4YWNA 2Q9KA 2ARZA 3F7EA 3A6QA 3KYGA 1VL7A 2ED4A 1W3PA 3R5LA 3BPKA 4HMSA 3FGEA 4XHYA 2AQ6A 2IMLA 4R82A 4HMXA 4HX6A 1USFA 2R6VA 3ZOCA 3BA3A 3CP3A 1XHNA 2HQ7A 3BNKA 2FHQA 2D5MA 1T9MA 5JABA 2ECRA 3E4VA 3K88A 3R5WA 3VY5A 3CB0A 4HMTA 1TY9A 2VPAA 3DMBA 3EC6A 3R5ZA 2OL5A 3NFWA
chains in the Genus database with same CATH superfamily
1XXOA 3B5MA 3AMFA 1I0RA 3SWJA 3K87A 1RZ0A 2L1TA 2A2JA 2ECUA 3H96A 1RFEA 4QVBA 1FLMA 1NRGA 2HQ9A 3R5YA 5CHOA 1WLKA 3HMZA 2HHZA 3RH7A 3R5PA 5ESCA 1RZ1A 1Y30A 3HY8A 4HMVA 2ASFA 2IABA 3ZOGA 3TGVA 2RE7A 1W3RA 2R0XA 3KYFA 3DNHA 2NR4A 4L82A 4W64A 2X1JA 1WLIA 2P5ZX 1WGBA 3A20A 3VYAA 4YBNA 1YOAA 1YLNA 1G78A 4IRAA 3GASA 3FKHA 2HTDA 1AXJA 1G77A 2OU5A 2I51A 1W9AA 1G76A 1W3OA 2IG6A 2X1KA 3U0IA 4ZKYA 3ZOFA 5BNCA 1I0SA 3EAAA 2I02A 1CI0A 4XJ2A 1W3QA 3R5RA 3ZOHA 4TV4A 5CHEC 3ZOEA 1EJEA 1USCA 2FG9A 1DNLA 4F07A 2D36A 2RDEA 4N7RC 2D38A 2GUJA 1G79A 2FURA 2K4QA 3IN6A 3K86A 3U5WA 3A6RA 3AWHA 4HMUA 3U35A 1WV4A 3DB0A 2QEAA 3PFTA 2HTIA 3ZODA 4MTKA 4Y9IA 4Z85A 3VY2A 2QCKA 4HMWA 2E83A 2D37A 1JNWA 2PTFA 3U34A 2GJGA 4YWNA 2Q9KA 2ARZA 3F7EA 3A6QA 3KYGA 1VL7A 2ED4A 1W3PA 3R5LA 3BPKA 4HMSA 3FGEA 4XHYA 2AQ6A 2IMLA 4R82A 4HMXA 4HX6A 1USFA 2R6VA 3ZOCA 3BA3A 3CP3A 1XHNA 2HQ7A 3BNKA 2FHQA 3HE1A 2D5MA 1T9MA 5JABA 2ECRA 3E4VA 3K88A 3R5WA 3VY5A 3CB0A 4HKHA 4HMTA 1TY9A 2VPAA 3DMBA 3EC6A 1Y12A 3R5ZA 4UHVA 3V4HA 2OL5A 3NFWA
chains in the Genus database with same CATH topology
1XXOA 3B5MA 3AMFA 1I0RA 3SWJA 3K87A 1RZ0A 2A2JA 2ECUA 3H96A 1RFEA 4QVBA 1FLMA 1NRGA 2HQ9A 3R5YA 5CHOA 1WLKA 3HMZA 2HHZA 3RH7A 3R5PA 5ESCA 1RZ1A 1Y30A 3HY8A 4HMVA 2ASFA 2IABA 3ZOGA 3TGVA 2RE7A 1W3RA 2R0XA 3KYFA 3DNHA 2NR4A 4L82A 2X1JA 1WLIA 1WGBA 3A20A 3VYAA 4YBNA 1YOAA 1YLNA 1G78A 4IRAA 3GASA 3FKHA 2HTDA 1AXJA 1G77A 2OU5A 2I51A 1W9AA 1G76A 1W3OA 2IG6A 2X1KA 3U0IA 4ZKYA 3ZOFA 5BNCA 1I0SA 2I02A 1CI0A 4XJ2A 1W3QA 3R5RA 3ZOHA 5CHEC 3ZOEA 1EJEA 1USCA 2FG9A 1DNLA 4F07A 2D36A 2RDEA 4N7RC 2D38A 1G79A 2FURA 3IN6A 3K86A 3U5WA 3A6RA 3AWHA 4HMUA 3U35A 1WV4A 3DB0A 2QEAA 3PFTA 2HTIA 3ZODA 4Y9IA 4Z85A 3VY2A 2QCKA 4HMWA 2E83A 2D37A 1JNWA 2PTFA 3U34A 2GJGA 4YWNA 2Q9KA 2ARZA 3F7EA 3A6QA 3KYGA 1VL7A 2ED4A 1W3PA 3R5LA 3BPKA 4HMSA 3FGEA 4XHYA 2AQ6A 2IMLA 4R82A 4HMXA 4HX6A 1USFA 2R6VA 3ZOCA 3BA3A 3CP3A 1XHNA 2HQ7A 3BNKA 2FHQA 2D5MA 1T9MA 5JABA 2ECRA 3E4VA 3K88A 3R5WA 3VY5A 3CB0A 4HMTA 1TY9A 2VPAA 3DMBA 3EC6A 3R5ZA 2OL5A 3NFWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XXO A;  3B5M A;  3AMF A;  1I0R A;  3SWJ A;  3K87 A;  1RZ0 A;  2A2J A;  2ECU A;  3H96 A;  1RFE A;  4QVB A;  1FLM A;  1NRG A;  2HQ9 A;  3R5Y A;  5CHO A;  1WLK A;  3HMZ A;  2HHZ A;  3RH7 A;  3R5P A;  5ESC A;  1RZ1 A;  1Y30 A;  3HY8 A;  4HMV A;  2ASF A;  2IAB A;  3ZOG A;  3TGV A;  2RE7 A;  1W3R A;  2R0X A;  3KYF A;  3DNH A;  2NR4 A;  4L82 A;  2X1J A;  1WLI A;  1WGB A;  3A20 A;  3VYA A;  4YBN A;  1YOA A;  1YLN A;  1G78 A;  4IRA A;  3GAS A;  3FKH A;  2HTD A;  1AXJ A;  1G77 A;  2OU5 A;  2I51 A;  1W9A A;  1G76 A;  1W3O A;  2IG6 A;  2X1K A;  3U0I A;  4ZKY A;  3ZOF A;  5BNC A;  1I0S A;  2I02 A;  1CI0 A;  4XJ2 A;  1W3Q A;  3R5R A;  3ZOH A;  5CHE C;  3ZOE A;  1EJE A;  1USC A;  2FG9 A;  1DNL A;  4F07 A;  2D36 A;  2RDE A;  4N7R C;  2D38 A;  1G79 A;  2FUR A;  3IN6 A;  3K86 A;  3U5W A;  3A6R A;  3AWH A;  4HMU A;  3U35 A;  1WV4 A;  3DB0 A;  2QEA A;  3PFT A;  2HTI A;  3ZOD A;  4Y9I A;  4Z85 A;  3VY2 A;  2QCK A;  4HMW A;  2E83 A;  2D37 A;  1JNW A;  2PTF A;  3U34 A;  2GJG A;  4YWN A;  2Q9K A;  2ARZ A;  3F7E A;  3A6Q A;  3KYG A;  1VL7 A;  2ED4 A;  1W3P A;  3R5L A;  3BPK A;  4HMS A;  3FGE A;  4XHY A;  2AQ6 A;  2IML A;  4R82 A;  4HMX A;  4HX6 A;  1USF A;  2R6V A;  3ZOC A;  3BA3 A;  3CP3 A;  1XHN A;  2HQ7 A;  3BNK A;  2FHQ A;  2D5M A;  1T9M A;  5JAB A;  2ECR A;  3E4V A;  3K88 A;  3R5W A;  3VY5 A;  3CB0 A;  4HMT A;  1TY9 A;  2VPA A;  3DMB A;  3EC6 A;  3R5Z A;  2OL5 A;  3NFW A; 
#chains in the Genus database with same CATH topology
 1XXO A;  3B5M A;  3AMF A;  1I0R A;  3SWJ A;  3K87 A;  1RZ0 A;  2L1T A;  2A2J A;  2ECU A;  3H96 A;  1RFE A;  4QVB A;  1FLM A;  1NRG A;  2HQ9 A;  3R5Y A;  5CHO A;  1WLK A;  3HMZ A;  2HHZ A;  3RH7 A;  3R5P A;  5ESC A;  1RZ1 A;  1Y30 A;  3HY8 A;  4HMV A;  2ASF A;  2IAB A;  3ZOG A;  3TGV A;  2RE7 A;  1W3R A;  2R0X A;  3KYF A;  3DNH A;  2NR4 A;  4L82 A;  4W64 A;  2X1J A;  1WLI A;  2P5Z X;  1WGB A;  3A20 A;  3VYA A;  4YBN A;  1YOA A;  1YLN A;  1G78 A;  4IRA A;  3GAS A;  3FKH A;  2HTD A;  1AXJ A;  1G77 A;  2OU5 A;  2I51 A;  1W9A A;  1G76 A;  1W3O A;  2IG6 A;  2X1K A;  3U0I A;  4ZKY A;  3ZOF A;  5BNC A;  1I0S A;  3EAA A;  2I02 A;  1CI0 A;  4XJ2 A;  1W3Q A;  3R5R A;  3ZOH A;  4TV4 A;  5CHE C;  3ZOE A;  1EJE A;  1USC A;  2FG9 A;  1DNL A;  4F07 A;  2D36 A;  2RDE A;  4N7R C;  2D38 A;  2GUJ A;  1G79 A;  2FUR A;  2K4Q A;  3IN6 A;  3K86 A;  3U5W A;  3A6R A;  3AWH A;  4HMU A;  3U35 A;  1WV4 A;  3DB0 A;  2QEA A;  3PFT A;  2HTI A;  3ZOD A;  4MTK A;  4Y9I A;  4Z85 A;  3VY2 A;  2QCK A;  4HMW A;  2E83 A;  2D37 A;  1JNW A;  2PTF A;  3U34 A;  2GJG A;  4YWN A;  2Q9K A;  2ARZ A;  3F7E A;  3A6Q A;  3KYG A;  1VL7 A;  2ED4 A;  1W3P A;  3R5L A;  3BPK A;  4HMS A;  3FGE A;  4XHY A;  2AQ6 A;  2IML A;  4R82 A;  4HMX A;  4HX6 A;  1USF A;  2R6V A;  3ZOC A;  3BA3 A;  3CP3 A;  1XHN A;  2HQ7 A;  3BNK A;  2FHQ A;  3HE1 A;  2D5M A;  1T9M A;  5JAB A;  2ECR A;  3E4V A;  3K88 A;  3R5W A;  3VY5 A;  3CB0 A;  4HKH A;  4HMT A;  1TY9 A;  2VPA A;  3DMB A;  3EC6 A;  1Y12 A;  3R5Z A;  4UHV A;  3V4H A;  2OL5 A;  3NFW A; 
#chains in the Genus database with same CATH homology
 1XXO A;  3B5M A;  3AMF A;  1I0R A;  3SWJ A;  3K87 A;  1RZ0 A;  2A2J A;  2ECU A;  3H96 A;  1RFE A;  4QVB A;  1FLM A;  1NRG A;  2HQ9 A;  3R5Y A;  5CHO A;  1WLK A;  3HMZ A;  2HHZ A;  3RH7 A;  3R5P A;  5ESC A;  1RZ1 A;  1Y30 A;  3HY8 A;  4HMV A;  2ASF A;  2IAB A;  3ZOG A;  3TGV A;  2RE7 A;  1W3R A;  2R0X A;  3KYF A;  3DNH A;  2NR4 A;  4L82 A;  2X1J A;  1WLI A;  1WGB A;  3A20 A;  3VYA A;  4YBN A;  1YOA A;  1YLN A;  1G78 A;  4IRA A;  3GAS A;  3FKH A;  2HTD A;  1AXJ A;  1G77 A;  2OU5 A;  2I51 A;  1W9A A;  1G76 A;  1W3O A;  2IG6 A;  2X1K A;  3U0I A;  4ZKY A;  3ZOF A;  5BNC A;  1I0S A;  2I02 A;  1CI0 A;  4XJ2 A;  1W3Q A;  3R5R A;  3ZOH A;  5CHE C;  3ZOE A;  1EJE A;  1USC A;  2FG9 A;  1DNL A;  4F07 A;  2D36 A;  2RDE A;  4N7R C;  2D38 A;  1G79 A;  2FUR A;  3IN6 A;  3K86 A;  3U5W A;  3A6R A;  3AWH A;  4HMU A;  3U35 A;  1WV4 A;  3DB0 A;  2QEA A;  3PFT A;  2HTI A;  3ZOD A;  4Y9I A;  4Z85 A;  3VY2 A;  2QCK A;  4HMW A;  2E83 A;  2D37 A;  1JNW A;  2PTF A;  3U34 A;  2GJG A;  4YWN A;  2Q9K A;  2ARZ A;  3F7E A;  3A6Q A;  3KYG A;  1VL7 A;  2ED4 A;  1W3P A;  3R5L A;  3BPK A;  4HMS A;  3FGE A;  4XHY A;  2AQ6 A;  2IML A;  4R82 A;  4HMX A;  4HX6 A;  1USF A;  2R6V A;  3ZOC A;  3BA3 A;  3CP3 A;  1XHN A;  2HQ7 A;  3BNK A;  2FHQ A;  2D5M A;  1T9M A;  5JAB A;  2ECR A;  3E4V A;  3K88 A;  3R5W A;  3VY5 A;  3CB0 A;  4HMT A;  1TY9 A;  2VPA A;  3DMB A;  3EC6 A;  3R5Z A;  2OL5 A;  3NFW A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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