3R67A

Crystal structure of a putative glycosidase (bt_4094) from bacteroides thetaiotaomicron vpi-5482 at 2.30 a resolution
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
349
structure length
349
Chain Sequence
SEFPDWAWADFQRPEGINPIVSPDTTTVFYCPMRQDSVAWESSDTFNPAATIYDGKVVVLYRAEDNSAVGIGSRTSRLGYAYSDDGLHFNRMTVPVFYPADDNQKELEWPGGCEDPRVAVTEDGLYVMLYTQWNRKQARLAVATSRDLQIWEKYGPAFAKAYGGRFFDEFSKSASIVTKLVDGKQVIAKIDGKYWMYWGEKFVNVATSTDLINWEPMLDEKGDFLKVITPREGKFDSDLTECGPPAIMTDKGILLLYNGKNKSGAEGDTLYTANSYCAGQALFDAKDPTKLIDRLDKPFYIPESDFEKSGQYPAGTVFIEGLVFHNQKWYLYYGCADSRVAVAVYDPFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords putative Glycosidase
publication title Crystal structure of a putative glycosidase (BT_4094) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.30 A resolution
rcsb
source organism Bacteroides thetaiotaomicron
total genus 78
structure length 349
sequence length 349
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3r67A00
3D61A 1YRZA 4AK5A 1UV4A 2VDTA 3QEEA 3BYNA 4O8OA 3AKHA 5FMCA 3LIHA 5JOYA 5GLKA 5AYDA 1WL7A 1GYDB 3R4ZA 4ONZA 4COTA 3C7OA 1YIFA 3UGGA 5AY9A 5FK8A 3D60A 4QQSA 3BYJA 1W2TA 3VT0A 5GLRA 3OM2A 3CU9A 3U75A 3VSFA 4N1IA 4N4BA 4UDGA 1GYEB 4O8NA 3LDRA 2EXHA 3KF5A 2AC1A 4KCAA 5GLOA 4FFIA 3LEMA 4FFFA 1Y7BA 1PT2A 3U14A 2EXKA 3VSRA 4KMIA 5FMDA 4D47A 4KC7A 3C7FA 5GLNA 3WPUA 5JOXA 2YFRA 2X8SA 3KSTA 4KCBA 3D5ZA 3VSZA 3QEFA 3WMYA 3PIGA 3NQHA 2EXJA 1Y4WA 5C0PA 3K1UA 3WMZA 3C7HA 3TAWA 3WN0A 3LF7A 3LFIA 5FKCA 3RWKX 3WAUA 3PIJA 4O8PA 4PVIA 5FKBA 2YFSA 3ZXJA 2QQVA 5A8CA 3OM6A 3ZXLA 1VKDA 2B4WA 3C7EA 1GYHA 3LDKA 1Y9MA 3OM5A 3C2UA 2X8FA 3AKIA 4FFGA 3BYKA 4AK6A 5GLMA 2X8TA 5JOZA 4UDIA 3SC7X 3BYLA 5ANNA 3WN2A 4AK7A 3QZ4A 1OYGA 4FFHA 3OM7A 4N2ZA 3WASA 5FLWA 3LIGA 5FK7A 2EXIA 3WPVA 4EQVA 3UGFA 4PVAA 5A7VB 5A8DA 4UDKE 3C7GA 3VT2A 3LV4A 4U6BA 3R67A 3OM4A 3UGHA 4U6DA 3VSSA 3WPZA 1ST8A 5GLQA 4UDJA 3AKFA 2ADDA 3D5YA 3WPYA 1UYPA 2AEYA 3QEDA 5FIXA 2YFTA 2ADEA 3R4YA 4MLGA 5JOWA 5GLPA 2AEZA 3P2NA 3AKGA 1YI7A 5AYCA 5A7VA 1W18A 4NOVA 3WATA 2OXBA 3WN1A 5GLLA 4UDKA 5FMBA 5AYEA 3KF3A 5B6TA 3ZXKA 3QC2A 1Y9GA 2XQRA 5B6SA 2QQWA 3VT1A 4N2RA 2QQUA 4KC8A
chains in the Genus database with same CATH superfamily
3D61A 1YRZA 4AK5A 1UV4A 2VDTA 3QEEA 3BYNA 4O8OA 3AKHA 5FMCA 3LIHA 5JOYA 5GLKA 5AYDA 1WL7A 1GYDB 3R4ZA 4ONZA 4COTA 3C7OA 1YIFA 3UGGA 5AY9A 5FK8A 3D60A 4QQSA 3BYJA 1TL2A 1W2TA 3VT0A 5GLRA 3OM2A 3CU9A 3U75A 3VSFA 4N1IA 4N4BA 4UDGA 1GYEB 4O8NA 3LDRA 2EXHA 3KF5A 2AC1A 4KCAA 5GLOA 4FFIA 3LEMA 4FFFA 1Y7BA 1PT2A 3U14A 2EXKA 3VSRA 4KMIA 5FMDA 4D47A 4KC7A 3C7FA 5GLNA 3WPUA 5JOXA 2YFRA 2X8SA 3KSTA 4KCBA 3D5ZA 3VSZA 3QEFA 3WMYA 3PIGA 3NQHA 2EXJA 1Y4WA 5C0PA 3K1UA 3WMZA 3C7HA 3TAWA 3WN0A 3LF7A 3LFIA 5FKCA 3RWKX 3WAUA 3PIJA 4O8PA 4PVIA 5FKBA 2YFSA 3ZXJA 2QQVA 5A8CA 3OM6A 3ZXLA 1VKDA 2B4WA 3C7EA 1GYHA 3LDKA 1Y9MA 3OM5A 3C2UA 2X8FA 3AKIA 4FFGA 3BYKA 4AK6A 5GLMA 2X8TA 5JOZA 4UDIA 3SC7X 3BYLA 5ANNA 3WN2A 4AK7A 3QZ4A 1OYGA 4FFHA 3OM7A 4N2ZA 3WASA 5FLWA 3LIGA 5FK7A 2EXIA 3WPVA 4EQVA 3UGFA 4PVAA 5A7VB 5A8DA 4UDKE 3C7GA 3VT2A 3LV4A 4U6BA 3R67A 3OM4A 3UGHA 4U6DA 3VSSA 3WPZA 1ST8A 5GLQA 4UDJA 3AKFA 2ADDA 3D5YA 3WPYA 1UYPA 5C2MA 2AEYA 3QEDA 5FIXA 2YFTA 2ADEA 3R4YA 4MLGA 5JOWA 5GLPA 2AEZA 3P2NA 3AKGA 1YI7A 5AYCA 5A7VA 1W18A 4NOVA 3WATA 2OXBA 3WN1A 5GLLA 4UDKA 5FMBA 5AYEA 3KF3A 5B6TA 3ZXKA 3QC2A 1Y9GA 2XQRA 5B6SA 2QQWA 3VT1A 4N2RA 2QQUA 4KC8A
chains in the Genus database with same CATH topology
3D61A 1YRZA 4AK5A 1UV4A 2VDTA 3QEEA 3BYNA 4O8OA 3AKHA 5FMCA 3LIHA 5JOYA 5GLKA 5AYDA 1WL7A 1GYDB 3R4ZA 4ONZA 4COTA 3C7OA 1YIFA 3UGGA 5AY9A 5FK8A 3D60A 4QQSA 3BYJA 1W2TA 3VT0A 5GLRA 3OM2A 3CU9A 3U75A 3VSFA 4N1IA 4N4BA 4UDGA 1GYEB 4O8NA 3LDRA 2EXHA 3KF5A 2AC1A 4KCAA 5GLOA 4FFIA 3LEMA 4FFFA 1Y7BA 1PT2A 3U14A 2EXKA 3VSRA 4KMIA 5FMDA 4D47A 4KC7A 3C7FA 5GLNA 3WPUA 5JOXA 2YFRA 2X8SA 3KSTA 4KCBA 3D5ZA 3VSZA 3QEFA 3WMYA 3PIGA 3NQHA 2EXJA 1Y4WA 5C0PA 3K1UA 3WMZA 3C7HA 3TAWA 3WN0A 3LF7A 3LFIA 5FKCA 3RWKX 3WAUA 3PIJA 4O8PA 4PVIA 5FKBA 2YFSA 3ZXJA 2QQVA 5A8CA 3OM6A 3ZXLA 1VKDA 2B4WA 3C7EA 1GYHA 3LDKA 1Y9MA 3OM5A 3C2UA 2X8FA 3AKIA 4FFGA 3BYKA 4AK6A 5GLMA 2X8TA 5JOZA 4UDIA 3SC7X 3BYLA 5ANNA 3WN2A 4AK7A 3QZ4A 1OYGA 4FFHA 3OM7A 4N2ZA 3WASA 5FLWA 3LIGA 5FK7A 2EXIA 3WPVA 4EQVA 3UGFA 4PVAA 5A7VB 5A8DA 4UDKE 3C7GA 3VT2A 3LV4A 4U6BA 3R67A 3OM4A 3UGHA 4U6DA 3VSSA 3WPZA 1ST8A 5GLQA 4UDJA 3AKFA 2ADDA 3D5YA 3WPYA 1UYPA 2AEYA 3QEDA 5FIXA 2YFTA 2ADEA 3R4YA 4MLGA 5JOWA 5GLPA 2AEZA 3P2NA 3AKGA 1YI7A 5AYCA 5A7VA 1W18A 4NOVA 3WATA 2OXBA 3WN1A 5GLLA 4UDKA 5FMBA 5AYEA 3KF3A 5B6TA 3ZXKA 3QC2A 1Y9GA 2XQRA 5B6SA 2QQWA 3VT1A 4N2RA 2QQUA 4KC8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D61 A;  1YRZ A;  4AK5 A;  1UV4 A;  2VDT A;  3QEE A;  3BYN A;  4O8O A;  3AKH A;  5FMC A;  3LIH A;  5JOY A;  5GLK A;  5AYD A;  1WL7 A;  1GYD B;  3R4Z A;  4ONZ A;  4COT A;  3C7O A;  1YIF A;  3UGG A;  5AY9 A;  5FK8 A;  3D60 A;  4QQS A;  3BYJ A;  1W2T A;  3VT0 A;  5GLR A;  3OM2 A;  3CU9 A;  3U75 A;  3VSF A;  4N1I A;  4N4B A;  4UDG A;  1GYE B;  4O8N A;  3LDR A;  2EXH A;  3KF5 A;  2AC1 A;  4KCA A;  5GLO A;  4FFI A;  3LEM A;  4FFF A;  1Y7B A;  1PT2 A;  3U14 A;  2EXK A;  3VSR A;  4KMI A;  5FMD A;  4D47 A;  4KC7 A;  3C7F A;  5GLN A;  3WPU A;  5JOX A;  2YFR A;  2X8S A;  3KST A;  4KCB A;  3D5Z A;  3VSZ A;  3QEF A;  3WMY A;  3PIG A;  3NQH A;  2EXJ A;  1Y4W A;  5C0P A;  3K1U A;  3WMZ A;  3C7H A;  3TAW A;  3WN0 A;  3LF7 A;  3LFI A;  5FKC A;  3RWK X;  3WAU A;  3PIJ A;  4O8P A;  4PVI A;  5FKB A;  2YFS A;  3ZXJ A;  2QQV A;  5A8C A;  3OM6 A;  3ZXL A;  1VKD A;  2B4W A;  3C7E A;  1GYH A;  3LDK A;  1Y9M A;  3OM5 A;  3C2U A;  2X8F A;  3AKI A;  4FFG A;  3BYK A;  4AK6 A;  5GLM A;  2X8T A;  5JOZ A;  4UDI A;  3SC7 X;  3BYL A;  5ANN A;  3WN2 A;  4AK7 A;  3QZ4 A;  1OYG A;  4FFH A;  3OM7 A;  4N2Z A;  3WAS A;  5FLW A;  3LIG A;  5FK7 A;  2EXI A;  3WPV A;  4EQV A;  3UGF A;  4PVA A;  5A7V B;  5A8D A;  4UDK E;  3C7G A;  3VT2 A;  3LV4 A;  4U6B A;  3R67 A;  3OM4 A;  3UGH A;  4U6D A;  3VSS A;  3WPZ A;  1ST8 A;  5GLQ A;  4UDJ A;  3AKF A;  2ADD A;  3D5Y A;  3WPY A;  1UYP A;  2AEY A;  3QED A;  5FIX A;  2YFT A;  2ADE A;  3R4Y A;  4MLG A;  5JOW A;  5GLP A;  2AEZ A;  3P2N A;  3AKG A;  1YI7 A;  5AYC A;  5A7V A;  1W18 A;  4NOV A;  3WAT A;  2OXB A;  3WN1 A;  5GLL A;  4UDK A;  5FMB A;  5AYE A;  3KF3 A;  5B6T A;  3ZXK A;  3QC2 A;  1Y9G A;  2XQR A;  5B6S A;  2QQW A;  3VT1 A;  4N2R A;  2QQU A;  4KC8 A; 
#chains in the Genus database with same CATH topology
 3D61 A;  1YRZ A;  4AK5 A;  1UV4 A;  2VDT A;  3QEE A;  3BYN A;  4O8O A;  3AKH A;  5FMC A;  3LIH A;  5JOY A;  5GLK A;  5AYD A;  1WL7 A;  1GYD B;  3R4Z A;  4ONZ A;  4COT A;  3C7O A;  1YIF A;  3UGG A;  5AY9 A;  5FK8 A;  3D60 A;  4QQS A;  3BYJ A;  1TL2 A;  1W2T A;  3VT0 A;  5GLR A;  3OM2 A;  3CU9 A;  3U75 A;  3VSF A;  4N1I A;  4N4B A;  4UDG A;  1GYE B;  4O8N A;  3LDR A;  2EXH A;  3KF5 A;  2AC1 A;  4KCA A;  5GLO A;  4FFI A;  3LEM A;  4FFF A;  1Y7B A;  1PT2 A;  3U14 A;  2EXK A;  3VSR A;  4KMI A;  5FMD A;  4D47 A;  4KC7 A;  3C7F A;  5GLN A;  3WPU A;  5JOX A;  2YFR A;  2X8S A;  3KST A;  4KCB A;  3D5Z A;  3VSZ A;  3QEF A;  3WMY A;  3PIG A;  3NQH A;  2EXJ A;  1Y4W A;  5C0P A;  3K1U A;  3WMZ A;  3C7H A;  3TAW A;  3WN0 A;  3LF7 A;  3LFI A;  5FKC A;  3RWK X;  3WAU A;  3PIJ A;  4O8P A;  4PVI A;  5FKB A;  2YFS A;  3ZXJ A;  2QQV A;  5A8C A;  3OM6 A;  3ZXL A;  1VKD A;  2B4W A;  3C7E A;  1GYH A;  3LDK A;  1Y9M A;  3OM5 A;  3C2U A;  2X8F A;  3AKI A;  4FFG A;  3BYK A;  4AK6 A;  5GLM A;  2X8T A;  5JOZ A;  4UDI A;  3SC7 X;  3BYL A;  5ANN A;  3WN2 A;  4AK7 A;  3QZ4 A;  1OYG A;  4FFH A;  3OM7 A;  4N2Z A;  3WAS A;  5FLW A;  3LIG A;  5FK7 A;  2EXI A;  3WPV A;  4EQV A;  3UGF A;  4PVA A;  5A7V B;  5A8D A;  4UDK E;  3C7G A;  3VT2 A;  3LV4 A;  4U6B A;  3R67 A;  3OM4 A;  3UGH A;  4U6D A;  3VSS A;  3WPZ A;  1ST8 A;  5GLQ A;  4UDJ A;  3AKF A;  2ADD A;  3D5Y A;  3WPY A;  1UYP A;  5C2M A;  2AEY A;  3QED A;  5FIX A;  2YFT A;  2ADE A;  3R4Y A;  4MLG A;  5JOW A;  5GLP A;  2AEZ A;  3P2N A;  3AKG A;  1YI7 A;  5AYC A;  5A7V A;  1W18 A;  4NOV A;  3WAT A;  2OXB A;  3WN1 A;  5GLL A;  4UDK A;  5FMB A;  5AYE A;  3KF3 A;  5B6T A;  3ZXK A;  3QC2 A;  1Y9G A;  2XQR A;  5B6S A;  2QQW A;  3VT1 A;  4N2R A;  2QQU A;  4KC8 A; 
#chains in the Genus database with same CATH homology
 3D61 A;  1YRZ A;  4AK5 A;  1UV4 A;  2VDT A;  3QEE A;  3BYN A;  4O8O A;  3AKH A;  5FMC A;  3LIH A;  5JOY A;  5GLK A;  5AYD A;  1WL7 A;  1GYD B;  3R4Z A;  4ONZ A;  4COT A;  3C7O A;  1YIF A;  3UGG A;  5AY9 A;  5FK8 A;  3D60 A;  4QQS A;  3BYJ A;  1W2T A;  3VT0 A;  5GLR A;  3OM2 A;  3CU9 A;  3U75 A;  3VSF A;  4N1I A;  4N4B A;  4UDG A;  1GYE B;  4O8N A;  3LDR A;  2EXH A;  3KF5 A;  2AC1 A;  4KCA A;  5GLO A;  4FFI A;  3LEM A;  4FFF A;  1Y7B A;  1PT2 A;  3U14 A;  2EXK A;  3VSR A;  4KMI A;  5FMD A;  4D47 A;  4KC7 A;  3C7F A;  5GLN A;  3WPU A;  5JOX A;  2YFR A;  2X8S A;  3KST A;  4KCB A;  3D5Z A;  3VSZ A;  3QEF A;  3WMY A;  3PIG A;  3NQH A;  2EXJ A;  1Y4W A;  5C0P A;  3K1U A;  3WMZ A;  3C7H A;  3TAW A;  3WN0 A;  3LF7 A;  3LFI A;  5FKC A;  3RWK X;  3WAU A;  3PIJ A;  4O8P A;  4PVI A;  5FKB A;  2YFS A;  3ZXJ A;  2QQV A;  5A8C A;  3OM6 A;  3ZXL A;  1VKD A;  2B4W A;  3C7E A;  1GYH A;  3LDK A;  1Y9M A;  3OM5 A;  3C2U A;  2X8F A;  3AKI A;  4FFG A;  3BYK A;  4AK6 A;  5GLM A;  2X8T A;  5JOZ A;  4UDI A;  3SC7 X;  3BYL A;  5ANN A;  3WN2 A;  4AK7 A;  3QZ4 A;  1OYG A;  4FFH A;  3OM7 A;  4N2Z A;  3WAS A;  5FLW A;  3LIG A;  5FK7 A;  2EXI A;  3WPV A;  4EQV A;  3UGF A;  4PVA A;  5A7V B;  5A8D A;  4UDK E;  3C7G A;  3VT2 A;  3LV4 A;  4U6B A;  3R67 A;  3OM4 A;  3UGH A;  4U6D A;  3VSS A;  3WPZ A;  1ST8 A;  5GLQ A;  4UDJ A;  3AKF A;  2ADD A;  3D5Y A;  3WPY A;  1UYP A;  2AEY A;  3QED A;  5FIX A;  2YFT A;  2ADE A;  3R4Y A;  4MLG A;  5JOW A;  5GLP A;  2AEZ A;  3P2N A;  3AKG A;  1YI7 A;  5AYC A;  5A7V A;  1W18 A;  4NOV A;  3WAT A;  2OXB A;  3WN1 A;  5GLL A;  4UDK A;  5FMB A;  5AYE A;  3KF3 A;  5B6T A;  3ZXK A;  3QC2 A;  1Y9G A;  2XQR A;  5B6S A;  2QQW A;  3VT1 A;  4N2R A;  2QQU A;  4KC8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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