3R6QA

A triclinic-lattice structure of aspartase from bacillus sp. ym55-1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
462
structure length
462
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
total genus 168
structure length 462
sequence length 462
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3r6qA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6qA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6qA02
4NLEA 4C5UA 4C5RA 5HW2A 1GK3A 1U16A 1YFMA 1GK2A 2RJSA 1GKJA 2PFMA 1AUWA 5F92A 1GKMA 2PTQA 3GTDA 1XWOA 2VD6A 2QGAB 2J91A 3TV2A 3R6QA 4MX2A 2RJRA 4EEIA 4BABA 3NZ4A 3NO9A 1TJ7A 1U15A 4FLCA 2O7BA 2PTRA 1C3UA 3C8TA 1HY1A 2X75A 3BHGA 1T6JA 1Y2MA 1K7WA 2QVEA 2O7FA 4APAA 4C5SA 1KQ7A 1FURA 4V2RA 4C6GA 2PTSA 1DCNA 3CZOA 1W27A 3RD8A 3R6YA 2YIIA 5EYTA 1TJVA 1B8FA 4CQ5A 1JSWA 4EFCA 1HY0A 3KDYA 1FUPA 3R6VA 1T6PA 3OCFA 4APBA 1K62A 4V2QA 2FUSA 2E9FA 1FUQA 1J3UA 1YFEA 1FUOA 4ADLA 1TJWA 2O7EA 4HGVA 5D6BA 4NSLA 2HVGA 1TJUA 5EYVA 1VDKA 2O7DA 3E04A 1C3CA 2NYNA 2OHYA 1EB4A 3RRPA 2O6YA 3QBPA 3UNVA 4BAAA 3KDZA 2NYFA 1RE5A 1DOFA 1I0AA 5F91A 1YISA 4ADMA 2O78A 1Q5NA 3OCEA 4FFXA 3GZHA
chains in the Genus database with same CATH superfamily
4NLEA 4C5UA 4C5RA 5HW2A 3F4TA 1GK3A 4NFLA 1XMDA 1U0LA 1U16A 1YFMA 1GK2A 2RJSA 1GKJA 3F4SA 2JAOA 4MWOA 1Z4PX 2PFMA 4WNLA 1AUWA 2JAUA 5F92A 1GKMA 2PTQA 3GTDA 1XWOA 2VL7A 2VD6A 4YIHA 2QGAB 2J91A 2FENA 4MUMA 2VSFA 3TV2A 4L57A 3R6QA 4MX2A 2RJRA 4EEIA 4BABA 3NZ4A 1MH9A 1TJ7A 1U15A 3NO9A 4FLCA 2O7BA 2PTRA 4E88A 1C3UA 3C8TA 4YIKA 1HY1A 2X75A 3BHGA 1Z4IA 1T6JA 1Y2MA 1K7WA 2QVEA 2O7FA 2D27A 4APAA 4C5SA 1KQ7A 4A15A 1XL8A 1FURA 4V2RA 4C6GA 2PTSA 1DCNA 3CZOA 1W27A 3RD8A 1T9HA 3F4RA 1Z4JA 1Z4MA 3R6YA 2YIIA 5EYTA 1TJVA 1B8FA 4CQ5A 2JAWA 1JSWA 1Q92A 4EFCA 2RCNA 1HY0A 3KDYA 4L6AA 1XL7A 1Z4KA 1FUPA 1XMCA 3R6VA 1Q91A 1T6PA 3OCFA 4APBA 3U19A 1K62A 4IQJM 4V2QA 2I7DA 2FUSA 2E9FA 1IW7D 1FUQA 4L6CA 1J3UA 1Z4QA 5M0IA 3CRVA 2D28C 1YFEA 3CI0K 1FUOA 4ADLA 1TJWA 2O7EA 4HGVA 5D6BA 4NSLA 2HVGA 1TJUA 5EYVA 2FELA 3BWVA 1VDKA 2O7DA 3E04A 1Z4LA 1C3CA 3U13A 2NYNA 2OHYA 1EB4A 3RRPA 2O6YA 3CRW1 3QBPA 3UNVA 5H8WA 4BAAA 3KDZA 2NYFA 2JARA 1RE5A 1DOFA 1I0AA 1XLYA 5F91A 1YISA 2YV5A 4ADMA 2O78A 1Q5NA 3OCEA 5M0JA 4FFXA 3GZHA
chains in the Genus database with same CATH topology
4NLEA 4C5UA 4C5RA 5HW2A 1GK3A 1U16A 1YFMA 1GK2A 2RJSA 1GKJA 2PFMA 1AUWA 5F92A 1GKMA 2PTQA 3GTDA 1XWOA 2VD6A 2QGAB 2J91A 3TV2A 3R6QA 4MX2A 2RJRA 4EEIA 4BABA 3NZ4A 3NO9A 1TJ7A 1U15A 4FLCA 2O7BA 2PTRA 1C3UA 3C8TA 1HY1A 2X75A 3BHGA 1T6JA 1Y2MA 1K7WA 2QVEA 2O7FA 4APAA 4C5SA 1KQ7A 1FURA 4V2RA 4C6GA 2PTSA 1DCNA 3CZOA 1W27A 3RD8A 3R6YA 2YIIA 5EYTA 1TJVA 1B8FA 4CQ5A 1JSWA 4EFCA 1HY0A 3KDYA 1FUPA 3R6VA 1T6PA 3OCFA 4APBA 1K62A 4V2QA 2FUSA 2E9FA 1FUQA 1J3UA 1YFEA 1FUOA 4ADLA 1TJWA 2O7EA 4HGVA 5D6BA 4NSLA 2HVGA 1TJUA 5EYVA 1VDKA 2O7DA 3E04A 1C3CA 2NYNA 2OHYA 1EB4A 3RRPA 2O6YA 3QBPA 3UNVA 4BAAA 3KDZA 2NYFA 1RE5A 1DOFA 1I0AA 5F91A 1YISA 4ADMA 2O78A 1Q5NA 3OCEA 4FFXA 3GZHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NLE A;  4C5U A;  4C5R A;  5HW2 A;  1GK3 A;  1U16 A;  1YFM A;  1GK2 A;  2RJS A;  1GKJ A;  2PFM A;  1AUW A;  5F92 A;  1GKM A;  2PTQ A;  3GTD A;  1XWO A;  2VD6 A;  2QGA B;  2J91 A;  3TV2 A;  3R6Q A;  4MX2 A;  2RJR A;  4EEI A;  4BAB A;  3NZ4 A;  3NO9 A;  1TJ7 A;  1U15 A;  4FLC A;  2O7B A;  2PTR A;  1C3U A;  3C8T A;  1HY1 A;  2X75 A;  3BHG A;  1T6J A;  1Y2M A;  1K7W A;  2QVE A;  2O7F A;  4APA A;  4C5S A;  1KQ7 A;  1FUR A;  4V2R A;  4C6G A;  2PTS A;  1DCN A;  3CZO A;  1W27 A;  3RD8 A;  3R6Y A;  2YII A;  5EYT A;  1TJV A;  1B8F A;  4CQ5 A;  1JSW A;  4EFC A;  1HY0 A;  3KDY A;  1FUP A;  3R6V A;  1T6P A;  3OCF A;  4APB A;  1K62 A;  4V2Q A;  2FUS A;  2E9F A;  1FUQ A;  1J3U A;  1YFE A;  1FUO A;  4ADL A;  1TJW A;  2O7E A;  4HGV A;  5D6B A;  4NSL A;  2HVG A;  1TJU A;  5EYV A;  1VDK A;  2O7D A;  3E04 A;  1C3C A;  2NYN A;  2OHY A;  1EB4 A;  3RRP A;  2O6Y A;  3QBP A;  3UNV A;  4BAA A;  3KDZ A;  2NYF A;  1RE5 A;  1DOF A;  1I0A A;  5F91 A;  1YIS A;  4ADM A;  2O78 A;  1Q5N A;  3OCE A;  4FFX A;  3GZH A; 
#chains in the Genus database with same CATH topology
 4NLE A;  4C5U A;  4C5R A;  5HW2 A;  3F4T A;  1GK3 A;  4NFL A;  1XMD A;  1U0L A;  1U16 A;  1YFM A;  1GK2 A;  2RJS A;  1GKJ A;  3F4S A;  2JAO A;  4MWO A;  1Z4P X;  2PFM A;  4WNL A;  1AUW A;  2JAU A;  5F92 A;  1GKM A;  2PTQ A;  3GTD A;  1XWO A;  2VL7 A;  2VD6 A;  4YIH A;  2QGA B;  2J91 A;  2FEN A;  4MUM A;  2VSF A;  3TV2 A;  4L57 A;  3R6Q A;  4MX2 A;  2RJR A;  4EEI A;  4BAB A;  3NZ4 A;  1MH9 A;  1TJ7 A;  1U15 A;  3NO9 A;  4FLC A;  2O7B A;  2PTR A;  4E88 A;  1C3U A;  3C8T A;  4YIK A;  1HY1 A;  2X75 A;  3BHG A;  1Z4I A;  1T6J A;  1Y2M A;  1K7W A;  2QVE A;  2O7F A;  2D27 A;  4APA A;  4C5S A;  1KQ7 A;  4A15 A;  1XL8 A;  1FUR A;  4V2R A;  4C6G A;  2PTS A;  1DCN A;  3CZO A;  1W27 A;  3RD8 A;  1T9H A;  3F4R A;  1Z4J A;  1Z4M A;  3R6Y A;  2YII A;  5EYT A;  1TJV A;  1B8F A;  4CQ5 A;  2JAW A;  1JSW A;  1Q92 A;  4EFC A;  2RCN A;  1HY0 A;  3KDY A;  4L6A A;  1XL7 A;  1Z4K A;  1FUP A;  1XMC A;  3R6V A;  1Q91 A;  1T6P A;  3OCF A;  4APB A;  3U19 A;  1K62 A;  4IQJ M;  4V2Q A;  2I7D A;  2FUS A;  2E9F A;  1IW7 D;  1FUQ A;  4L6C A;  1J3U A;  1Z4Q A;  5M0I A;  3CRV A;  2D28 C;  1YFE A;  3CI0 K;  1FUO A;  4ADL A;  1TJW A;  2O7E A;  4HGV A;  5D6B A;  4NSL A;  2HVG A;  1TJU A;  5EYV A;  2FEL A;  3BWV A;  1VDK A;  2O7D A;  3E04 A;  1Z4L A;  1C3C A;  3U13 A;  2NYN A;  2OHY A;  1EB4 A;  3RRP A;  2O6Y A;  3CRW 1;  3QBP A;  3UNV A;  5H8W A;  4BAA A;  3KDZ A;  2NYF A;  2JAR A;  1RE5 A;  1DOF A;  1I0A A;  1XLY A;  5F91 A;  1YIS A;  2YV5 A;  4ADM A;  2O78 A;  1Q5N A;  3OCE A;  5M0J A;  4FFX A;  3GZH A; 
#chains in the Genus database with same CATH homology
 4NLE A;  4C5U A;  4C5R A;  5HW2 A;  1GK3 A;  1U16 A;  1YFM A;  1GK2 A;  2RJS A;  1GKJ A;  2PFM A;  1AUW A;  5F92 A;  1GKM A;  2PTQ A;  3GTD A;  1XWO A;  2VD6 A;  2QGA B;  2J91 A;  3TV2 A;  3R6Q A;  4MX2 A;  2RJR A;  4EEI A;  4BAB A;  3NZ4 A;  3NO9 A;  1TJ7 A;  1U15 A;  4FLC A;  2O7B A;  2PTR A;  1C3U A;  3C8T A;  1HY1 A;  2X75 A;  3BHG A;  1T6J A;  1Y2M A;  1K7W A;  2QVE A;  2O7F A;  4APA A;  4C5S A;  1KQ7 A;  1FUR A;  4V2R A;  4C6G A;  2PTS A;  1DCN A;  3CZO A;  1W27 A;  3RD8 A;  3R6Y A;  2YII A;  5EYT A;  1TJV A;  1B8F A;  4CQ5 A;  1JSW A;  4EFC A;  1HY0 A;  3KDY A;  1FUP A;  3R6V A;  1T6P A;  3OCF A;  4APB A;  1K62 A;  4V2Q A;  2FUS A;  2E9F A;  1FUQ A;  1J3U A;  1YFE A;  1FUO A;  4ADL A;  1TJW A;  2O7E A;  4HGV A;  5D6B A;  4NSL A;  2HVG A;  1TJU A;  5EYV A;  1VDK A;  2O7D A;  3E04 A;  1C3C A;  2NYN A;  2OHY A;  1EB4 A;  3RRP A;  2O6Y A;  3QBP A;  3UNV A;  4BAA A;  3KDZ A;  2NYF A;  1RE5 A;  1DOF A;  1I0A A;  5F91 A;  1YIS A;  4ADM A;  2O78 A;  1Q5N A;  3OCE A;  4FFX A;  3GZH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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