3R6QA

A triclinic-lattice structure of aspartase from bacillus sp. ym55-1
Total Genus 168
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
462
structure length
462
Chain Sequence
b'VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
total genus 168
structure length 462
sequence length 462
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3r6qA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6qA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6qA02
4APBA 3GTDA 5F92A 1HY1A 1VDKA 4EFCA 2E9FA 4V2RA 1B8FA 2NYFA 2YIIA 1K7WA 2O7BA 1GKJA 1YFMA 2J91A 1RE5A 3GZHA 1GKMA 1FUPA 3R6VA 1C3UA 1K62A 2QGAB 1AUWA 2PFMA 4MX2A 2O6YA 1XWOA 5HW2A 4C5SA 4ADMA 1JSWA 3C8TA 3OCFA 1FUQA 2O78A 1J3UA 2RJRA 4EEIA 1GK2A 1DOFA 4BABA 1TJWA 3E04A 3KDZA 3RD8A 5EYVA 4HGVA 3TV2A 5F91A 2O7DA 3NO9A 2FUSA 1YFEA 4NLEA 2NYNA 4CQ5A 2O7EA 4FFXA 1Y2MA 1Q5NA 2PTQA 3OCEA 4FLCA 1FUOA 3UNVA 3BHGA 5EYTA 3CZOA 2PTSA 5D6BA 1C3CA 1TJUA 1U15A 4APAA 1EB4A 2X75A 3KDYA 1TJVA 4C5RA 1T6JA 1W27A 4C6GA 3RRPA 1GK3A 2QVEA 2RJSA 4BAAA 1FURA 3NZ4A 3R6YA 1T6PA 2VD6A 4NSLA 4V2QA 1I0AA 3QBPA 1YISA 4ADLA 2OHYA 1TJ7A 1U16A 2PTRA 1HY0A 2O7FA 1KQ7A 4C5UA 3R6QA 1DCNA 2HVGA
chains in the Genus database with same CATH superfamily
4APBA 3GTDA 5F92A 4WNLA 1HY1A 1VDKA 3CRW1 2JAUA 4EFCA 2E9FA 4V2RA 1B8FA 2NYFA 2YIIA 1K7WA 2O7BA 1GKJA 1XL8A 1Z4JA 2FENA 1Z4LA 1YFMA 1U0LA 1Q91A 2I7DA 3F4RA 3U13A 2JAOA 2J91A 1RE5A 5M0IA 3GZHA 1GKMA 1FUPA 3BWVA 1MH9A 1Z4IA 1C3UA 3R6VA 1K62A 2QGAB 4MUMA 1AUWA 1XL7A 2PFMA 4MX2A 5M0JA 2O6YA 1XWOA 5HW2A 4C5SA 2JAWA 1JSWA 4ADMA 1Q92A 1XMCA 4YIHA 3C8TA 1Z4QA 3OCFA 1FUQA 2O78A 1J3UA 2VL7A 2RJRA 4EEIA 1GK2A 1DOFA 4NFLA 4BABA 1Z4KA 1TJWA 2D28C 3E04A 4IQJM 3F4TA 5H8WA 3KDZA 3RD8A 2FELA 5EYVA 4HGVA 3TV2A 1T9HA 5F91A 2O7DA 2RCNA 4L57A 3NO9A 2FUSA 1YFEA 4NLEA 2NYNA 4CQ5A 2D27A 2O7EA 4FFXA 3CI0K 1Y2MA 1Q5NA 2PTQA 3OCEA 4FLCA 1FUOA 4MWOA 3UNVA 3BHGA 5EYTA 3CZOA 5D6BA 1C3CA 1TJUA 1U15A 4APAA 2JARA 1EB4A 2X75A 3F4SA 3CRVA 4L6CA 4E88A 3KDYA 1IW7D 1TJVA 4C5RA 1Z4PX 1XLYA 1T6JA 4A15A 1W27A 2YV5A 4C6GA 3RRPA 1GK3A 2QVEA 2RJSA 4BAAA 1FURA 4L6AA 3NZ4A 3R6YA 1XMDA 1T6PA 2VD6A 4NSLA 4V2QA 1I0AA 3QBPA 3R6QA 2VSFA 1YISA 4ADLA 4YIKA 2OHYA 3U19A 1TJ7A 1Z4MA 1U16A 2PTRA 1HY0A 2O7FA 1KQ7A 4C5UA 2PTSA 1DCNA 2HVGA
chains in the Genus database with same CATH topology
4APBA 3GTDA 5F92A 1HY1A 1VDKA 4EFCA 2E9FA 4V2RA 1B8FA 2NYFA 2YIIA 1K7WA 2O7BA 1GKJA 1YFMA 2J91A 1RE5A 3GZHA 1GKMA 1FUPA 3R6VA 1C3UA 1K62A 2QGAB 1AUWA 2PFMA 4MX2A 2O6YA 1XWOA 5HW2A 4C5SA 4ADMA 1JSWA 3C8TA 3OCFA 1FUQA 2O78A 1J3UA 2RJRA 4EEIA 1GK2A 1DOFA 4BABA 1TJWA 3E04A 3KDZA 3RD8A 5EYVA 4HGVA 3TV2A 5F91A 2O7DA 3NO9A 2FUSA 1YFEA 4NLEA 2NYNA 4CQ5A 2O7EA 4FFXA 1Y2MA 1Q5NA 2PTQA 3OCEA 4FLCA 1FUOA 3UNVA 3BHGA 5EYTA 3CZOA 2PTSA 5D6BA 1C3CA 1TJUA 1U15A 4APAA 1EB4A 2X75A 3KDYA 1TJVA 4C5RA 1T6JA 1W27A 4C6GA 3RRPA 1GK3A 2QVEA 2RJSA 4BAAA 1FURA 3NZ4A 3R6YA 1T6PA 2VD6A 4NSLA 4V2QA 1I0AA 3QBPA 1YISA 4ADLA 2OHYA 1TJ7A 1U16A 2PTRA 1HY0A 2O7FA 1KQ7A 4C5UA 3R6QA 1DCNA 2HVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4APB A;  3GTD A;  5F92 A;  1HY1 A;  1VDK A;  4EFC A;  2E9F A;  4V2R A;  1B8F A;  2NYF A;  2YII A;  1K7W A;  2O7B A;  1GKJ A;  1YFM A;  2J91 A;  1RE5 A;  3GZH A;  1GKM A;  1FUP A;  3R6V A;  1C3U A;  1K62 A;  2QGA B;  1AUW A;  2PFM A;  4MX2 A;  2O6Y A;  1XWO A;  5HW2 A;  4C5S A;  4ADM A;  1JSW A;  3C8T A;  3OCF A;  1FUQ A;  2O78 A;  1J3U A;  2RJR A;  4EEI A;  1GK2 A;  1DOF A;  4BAB A;  1TJW A;  3E04 A;  3KDZ A;  3RD8 A;  5EYV A;  4HGV A;  3TV2 A;  5F91 A;  2O7D A;  3NO9 A;  2FUS A;  1YFE A;  4NLE A;  2NYN A;  4CQ5 A;  2O7E A;  4FFX A;  1Y2M A;  1Q5N A;  2PTQ A;  3OCE A;  4FLC A;  1FUO A;  3UNV A;  3BHG A;  5EYT A;  3CZO A;  2PTS A;  5D6B A;  1C3C A;  1TJU A;  1U15 A;  4APA A;  1EB4 A;  2X75 A;  3KDY A;  1TJV A;  4C5R A;  1T6J A;  1W27 A;  4C6G A;  3RRP A;  1GK3 A;  2QVE A;  2RJS A;  4BAA A;  1FUR A;  3NZ4 A;  3R6Y A;  1T6P A;  2VD6 A;  4NSL A;  4V2Q A;  1I0A A;  3QBP A;  1YIS A;  4ADL A;  2OHY A;  1TJ7 A;  1U16 A;  2PTR A;  1HY0 A;  2O7F A;  1KQ7 A;  4C5U A;  3R6Q A;  1DCN A;  2HVG A; 
#chains in the Genus database with same CATH topology
 4APB A;  3GTD A;  5F92 A;  4WNL A;  1HY1 A;  1VDK A;  3CRW 1;  2JAU A;  4EFC A;  2E9F A;  4V2R A;  1B8F A;  2NYF A;  2YII A;  1K7W A;  2O7B A;  1GKJ A;  1XL8 A;  1Z4J A;  2FEN A;  1Z4L A;  1YFM A;  1U0L A;  1Q91 A;  2I7D A;  3F4R A;  3U13 A;  2JAO A;  2J91 A;  1RE5 A;  5M0I A;  3GZH A;  1GKM A;  1FUP A;  3BWV A;  1MH9 A;  1Z4I A;  1C3U A;  3R6V A;  1K62 A;  2QGA B;  4MUM A;  1AUW A;  1XL7 A;  2PFM A;  4MX2 A;  5M0J A;  2O6Y A;  1XWO A;  5HW2 A;  4C5S A;  2JAW A;  1JSW A;  4ADM A;  1Q92 A;  1XMC A;  4YIH A;  3C8T A;  1Z4Q A;  3OCF A;  1FUQ A;  2O78 A;  1J3U A;  2VL7 A;  2RJR A;  4EEI A;  1GK2 A;  1DOF A;  4NFL A;  4BAB A;  1Z4K A;  1TJW A;  2D28 C;  3E04 A;  4IQJ M;  3F4T A;  5H8W A;  3KDZ A;  3RD8 A;  2FEL A;  5EYV A;  4HGV A;  3TV2 A;  1T9H A;  5F91 A;  2O7D A;  2RCN A;  4L57 A;  3NO9 A;  2FUS A;  1YFE A;  4NLE A;  2NYN A;  4CQ5 A;  2D27 A;  2O7E A;  4FFX A;  3CI0 K;  1Y2M A;  1Q5N A;  2PTQ A;  3OCE A;  4FLC A;  1FUO A;  4MWO A;  3UNV A;  3BHG A;  5EYT A;  3CZO A;  5D6B A;  1C3C A;  1TJU A;  1U15 A;  4APA A;  2JAR A;  1EB4 A;  2X75 A;  3F4S A;  3CRV A;  4L6C A;  4E88 A;  3KDY A;  1IW7 D;  1TJV A;  4C5R A;  1Z4P X;  1XLY A;  1T6J A;  4A15 A;  1W27 A;  2YV5 A;  4C6G A;  3RRP A;  1GK3 A;  2QVE A;  2RJS A;  4BAA A;  1FUR A;  4L6A A;  3NZ4 A;  3R6Y A;  1XMD A;  1T6P A;  2VD6 A;  4NSL A;  4V2Q A;  1I0A A;  3QBP A;  3R6Q A;  2VSF A;  1YIS A;  4ADL A;  4YIK A;  2OHY A;  3U19 A;  1TJ7 A;  1Z4M A;  1U16 A;  2PTR A;  1HY0 A;  2O7F A;  1KQ7 A;  4C5U A;  2PTS A;  1DCN A;  2HVG A; 
#chains in the Genus database with same CATH homology
 4APB A;  3GTD A;  5F92 A;  1HY1 A;  1VDK A;  4EFC A;  2E9F A;  4V2R A;  1B8F A;  2NYF A;  2YII A;  1K7W A;  2O7B A;  1GKJ A;  1YFM A;  2J91 A;  1RE5 A;  3GZH A;  1GKM A;  1FUP A;  3R6V A;  1C3U A;  1K62 A;  2QGA B;  1AUW A;  2PFM A;  4MX2 A;  2O6Y A;  1XWO A;  5HW2 A;  4C5S A;  4ADM A;  1JSW A;  3C8T A;  3OCF A;  1FUQ A;  2O78 A;  1J3U A;  2RJR A;  4EEI A;  1GK2 A;  1DOF A;  4BAB A;  1TJW A;  3E04 A;  3KDZ A;  3RD8 A;  5EYV A;  4HGV A;  3TV2 A;  5F91 A;  2O7D A;  3NO9 A;  2FUS A;  1YFE A;  4NLE A;  2NYN A;  4CQ5 A;  2O7E A;  4FFX A;  1Y2M A;  1Q5N A;  2PTQ A;  3OCE A;  4FLC A;  1FUO A;  3UNV A;  3BHG A;  5EYT A;  3CZO A;  2PTS A;  5D6B A;  1C3C A;  1TJU A;  1U15 A;  4APA A;  1EB4 A;  2X75 A;  3KDY A;  1TJV A;  4C5R A;  1T6J A;  1W27 A;  4C6G A;  3RRP A;  1GK3 A;  2QVE A;  2RJS A;  4BAA A;  1FUR A;  3NZ4 A;  3R6Y A;  1T6P A;  2VD6 A;  4NSL A;  4V2Q A;  1I0A A;  3QBP A;  1YIS A;  4ADL A;  2OHY A;  1TJ7 A;  1U16 A;  2PTR A;  1HY0 A;  2O7F A;  1KQ7 A;  4C5U A;  3R6Q A;  1DCN A;  2HVG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...