3R6VA

Crystal structure of aspartase from bacillus sp. ym55-1 with bound l-aspartate
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
458
structure length
458
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
molecule keywords Aspartase
total genus 157
structure length 458
sequence length 458
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3r6vA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6vA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6vA02
2NYFA 4FLCA 2PTSA 3KDZA 4HGVA 1TJUA 3CZOA 2HVGA 4APAA 1EB4A 1GKJA 5D6BA 4C6GA 1YISA 1FUOA 2RJSA 1YFMA 1TJ7A 2J91A 1HY0A 2OHYA 1U15A 4NSLA 1FUQA 2O6YA 4NLEA 3OCEA 1HY1A 4FFXA 5F91A 2E9FA 1GK3A 1XWOA 1Y2MA 1W27A 3KDYA 4APBA 1TJVA 2NYNA 1VDKA 3TV2A 2QVEA 3OCFA 3NZ4A 1K7WA 2QGAB 2O78A 3R6YA 4V2QA 4C5UA 1C3UA 2O7DA 1FUPA 1Q5NA 4V2RA 1K62A 4EEIA 2X75A 3E04A 3BHGA 2O7BA 1YFEA 4CQ5A 3QBPA 3GTDA 3C8TA 5EYVA 1TJWA 3RRPA 1B8FA 4ADMA 2RJRA 5F92A 1RE5A 5HW2A 3UNVA 1U16A 1T6PA 1I0AA 5EYTA 1T6JA 1AUWA 2FUSA 4C5SA 1DOFA 4MX2A 2O7FA 2VD6A 2O7EA 4BABA 2PTQA 1C3CA 1GK2A 3R6QA 4C5RA 1JSWA 1GKMA 1DCNA 4BAAA 3GZHA 1FURA 3RD8A 1J3UA 1KQ7A 4ADLA 2PTRA 4EFCA 2YIIA 3NO9A 3R6VA 2PFMA
chains in the Genus database with same CATH superfamily
2NYFA 4FLCA 2PTSA 3F4RA 3KDZA 4HGVA 1TJUA 2D28C 3CZOA 2HVGA 4APAA 1T9HA 1EB4A 1GKJA 2VSFA 5M0JA 3BWVA 5D6BA 1XLYA 4C6GA 1YISA 1FUOA 2RJSA 2JAWA 4NFLA 1YFMA 2RCNA 1TJ7A 2J91A 2JAOA 1XL8A 4L6AA 1HY0A 2OHYA 4A15A 1U15A 4NSLA 2FENA 1FUQA 4NLEA 2O6YA 1Z4LA 1Q91A 3OCEA 1HY1A 3F4SA 4FFXA 1XMDA 1MH9A 5F91A 2E9FA 1GK3A 1XWOA 1Y2MA 1W27A 3KDYA 1IW7D 4IQJM 3F4TA 4APBA 1TJVA 2NYNA 1VDKA 3TV2A 2QVEA 3OCFA 2VL7A 1Z4MA 5H8WA 3NZ4A 4L57A 1K7WA 2QGAB 1U0LA 2O78A 3R6YA 4V2QA 2D27A 4C5UA 1XL7A 1C3UA 3CI0K 2O7DA 1Q5NA 1FUPA 4V2RA 1K62A 4EEIA 2X75A 3E04A 3BHGA 4E88A 2O7BA 1YFEA 2JARA 4CQ5A 1Z4JA 3QBPA 3GTDA 3C8TA 5EYVA 1TJWA 3U13A 1Z4PX 3RRPA 1B8FA 4ADMA 2RJRA 5F92A 1RE5A 5HW2A 3UNVA 1U16A 1T6PA 1I0AA 5EYTA 1T6JA 1AUWA 4YIHA 2FUSA 4C5SA 1DOFA 4MWOA 4MX2A 2O7FA 2VD6A 2O7EA 4BABA 2PTQA 2JAUA 3U19A 5M0IA 1C3CA 4L6CA 2I7DA 1GK2A 4YIKA 3R6QA 1Q92A 4C5RA 1JSWA 1GKMA 1DCNA 4BAAA 3GZHA 1FURA 4WNLA 3RD8A 1J3UA 1Z4IA 1KQ7A 4ADLA 2PTRA 2FELA 1XMCA 4EFCA 2YIIA 4MUMA 1Z4QA 3NO9A 3R6VA 3CRVA 2YV5A 3CRW1 1Z4KA 2PFMA
chains in the Genus database with same CATH topology
2NYFA 4FLCA 2PTSA 3KDZA 4HGVA 1TJUA 3CZOA 2HVGA 4APAA 1EB4A 1GKJA 5D6BA 4C6GA 1YISA 1FUOA 2RJSA 1YFMA 1TJ7A 2J91A 1HY0A 2OHYA 1U15A 4NSLA 1FUQA 2O6YA 4NLEA 3OCEA 1HY1A 4FFXA 5F91A 2E9FA 1GK3A 1XWOA 1Y2MA 1W27A 3KDYA 4APBA 1TJVA 2NYNA 1VDKA 3TV2A 2QVEA 3OCFA 3NZ4A 1K7WA 2QGAB 2O78A 3R6YA 4V2QA 4C5UA 1C3UA 2O7DA 1FUPA 1Q5NA 4V2RA 1K62A 4EEIA 2X75A 3E04A 3BHGA 2O7BA 1YFEA 4CQ5A 3QBPA 3GTDA 3C8TA 5EYVA 1TJWA 3RRPA 1B8FA 4ADMA 2RJRA 5F92A 1RE5A 5HW2A 3UNVA 1U16A 1T6PA 1I0AA 5EYTA 1T6JA 1AUWA 2FUSA 4C5SA 1DOFA 4MX2A 2O7FA 2VD6A 2O7EA 4BABA 2PTQA 1C3CA 1GK2A 3R6QA 4C5RA 1JSWA 1GKMA 1DCNA 4BAAA 3GZHA 1FURA 3RD8A 1J3UA 1KQ7A 4ADLA 2PTRA 4EFCA 2YIIA 3NO9A 3R6VA 2PFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NYF A;  4FLC A;  2PTS A;  3KDZ A;  4HGV A;  1TJU A;  3CZO A;  2HVG A;  4APA A;  1EB4 A;  1GKJ A;  5D6B A;  4C6G A;  1YIS A;  1FUO A;  2RJS A;  1YFM A;  1TJ7 A;  2J91 A;  1HY0 A;  2OHY A;  1U15 A;  4NSL A;  1FUQ A;  2O6Y A;  4NLE A;  3OCE A;  1HY1 A;  4FFX A;  5F91 A;  2E9F A;  1GK3 A;  1XWO A;  1Y2M A;  1W27 A;  3KDY A;  4APB A;  1TJV A;  2NYN A;  1VDK A;  3TV2 A;  2QVE A;  3OCF A;  3NZ4 A;  1K7W A;  2QGA B;  2O78 A;  3R6Y A;  4V2Q A;  4C5U A;  1C3U A;  2O7D A;  1FUP A;  1Q5N A;  4V2R A;  1K62 A;  4EEI A;  2X75 A;  3E04 A;  3BHG A;  2O7B A;  1YFE A;  4CQ5 A;  3QBP A;  3GTD A;  3C8T A;  5EYV A;  1TJW A;  3RRP A;  1B8F A;  4ADM A;  2RJR A;  5F92 A;  1RE5 A;  5HW2 A;  3UNV A;  1U16 A;  1T6P A;  1I0A A;  5EYT A;  1T6J A;  1AUW A;  2FUS A;  4C5S A;  1DOF A;  4MX2 A;  2O7F A;  2VD6 A;  2O7E A;  4BAB A;  2PTQ A;  1C3C A;  1GK2 A;  3R6Q A;  4C5R A;  1JSW A;  1GKM A;  1DCN A;  4BAA A;  3GZH A;  1FUR A;  3RD8 A;  1J3U A;  1KQ7 A;  4ADL A;  2PTR A;  4EFC A;  2YII A;  3NO9 A;  3R6V A;  2PFM A; 
#chains in the Genus database with same CATH topology
 2NYF A;  4FLC A;  2PTS A;  3F4R A;  3KDZ A;  4HGV A;  1TJU A;  2D28 C;  3CZO A;  2HVG A;  4APA A;  1T9H A;  1EB4 A;  1GKJ A;  2VSF A;  5M0J A;  3BWV A;  5D6B A;  1XLY A;  4C6G A;  1YIS A;  1FUO A;  2RJS A;  2JAW A;  4NFL A;  1YFM A;  2RCN A;  1TJ7 A;  2J91 A;  2JAO A;  1XL8 A;  4L6A A;  1HY0 A;  2OHY A;  4A15 A;  1U15 A;  4NSL A;  2FEN A;  1FUQ A;  4NLE A;  2O6Y A;  1Z4L A;  1Q91 A;  3OCE A;  1HY1 A;  3F4S A;  4FFX A;  1XMD A;  1MH9 A;  5F91 A;  2E9F A;  1GK3 A;  1XWO A;  1Y2M A;  1W27 A;  3KDY A;  1IW7 D;  4IQJ M;  3F4T A;  4APB A;  1TJV A;  2NYN A;  1VDK A;  3TV2 A;  2QVE A;  3OCF A;  2VL7 A;  1Z4M A;  5H8W A;  3NZ4 A;  4L57 A;  1K7W A;  2QGA B;  1U0L A;  2O78 A;  3R6Y A;  4V2Q A;  2D27 A;  4C5U A;  1XL7 A;  1C3U A;  3CI0 K;  2O7D A;  1Q5N A;  1FUP A;  4V2R A;  1K62 A;  4EEI A;  2X75 A;  3E04 A;  3BHG A;  4E88 A;  2O7B A;  1YFE A;  2JAR A;  4CQ5 A;  1Z4J A;  3QBP A;  3GTD A;  3C8T A;  5EYV A;  1TJW A;  3U13 A;  1Z4P X;  3RRP A;  1B8F A;  4ADM A;  2RJR A;  5F92 A;  1RE5 A;  5HW2 A;  3UNV A;  1U16 A;  1T6P A;  1I0A A;  5EYT A;  1T6J A;  1AUW A;  4YIH A;  2FUS A;  4C5S A;  1DOF A;  4MWO A;  4MX2 A;  2O7F A;  2VD6 A;  2O7E A;  4BAB A;  2PTQ A;  2JAU A;  3U19 A;  5M0I A;  1C3C A;  4L6C A;  2I7D A;  1GK2 A;  4YIK A;  3R6Q A;  1Q92 A;  4C5R A;  1JSW A;  1GKM A;  1DCN A;  4BAA A;  3GZH A;  1FUR A;  4WNL A;  3RD8 A;  1J3U A;  1Z4I A;  1KQ7 A;  4ADL A;  2PTR A;  2FEL A;  1XMC A;  4EFC A;  2YII A;  4MUM A;  1Z4Q A;  3NO9 A;  3R6V A;  3CRV A;  2YV5 A;  3CRW 1;  1Z4K A;  2PFM A; 
#chains in the Genus database with same CATH homology
 2NYF A;  4FLC A;  2PTS A;  3KDZ A;  4HGV A;  1TJU A;  3CZO A;  2HVG A;  4APA A;  1EB4 A;  1GKJ A;  5D6B A;  4C6G A;  1YIS A;  1FUO A;  2RJS A;  1YFM A;  1TJ7 A;  2J91 A;  1HY0 A;  2OHY A;  1U15 A;  4NSL A;  1FUQ A;  2O6Y A;  4NLE A;  3OCE A;  1HY1 A;  4FFX A;  5F91 A;  2E9F A;  1GK3 A;  1XWO A;  1Y2M A;  1W27 A;  3KDY A;  4APB A;  1TJV A;  2NYN A;  1VDK A;  3TV2 A;  2QVE A;  3OCF A;  3NZ4 A;  1K7W A;  2QGA B;  2O78 A;  3R6Y A;  4V2Q A;  4C5U A;  1C3U A;  2O7D A;  1FUP A;  1Q5N A;  4V2R A;  1K62 A;  4EEI A;  2X75 A;  3E04 A;  3BHG A;  2O7B A;  1YFE A;  4CQ5 A;  3QBP A;  3GTD A;  3C8T A;  5EYV A;  1TJW A;  3RRP A;  1B8F A;  4ADM A;  2RJR A;  5F92 A;  1RE5 A;  5HW2 A;  3UNV A;  1U16 A;  1T6P A;  1I0A A;  5EYT A;  1T6J A;  1AUW A;  2FUS A;  4C5S A;  1DOF A;  4MX2 A;  2O7F A;  2VD6 A;  2O7E A;  4BAB A;  2PTQ A;  1C3C A;  1GK2 A;  3R6Q A;  4C5R A;  1JSW A;  1GKM A;  1DCN A;  4BAA A;  3GZH A;  1FUR A;  3RD8 A;  1J3U A;  1KQ7 A;  4ADL A;  2PTR A;  4EFC A;  2YII A;  3NO9 A;  3R6V A;  2PFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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