3R6VA

Crystal structure of aspartase from bacillus sp. ym55-1 with bound l-aspartate
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
458
structure length
458
Chain Sequence
b'VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
total genus 157
structure length 458
sequence length 458
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3r6vA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6vA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6vA02
4CQ5A 1AUWA 1KQ7A 2X75A 4NSLA 3GTDA 4MX2A 4APBA 3RRPA 3UNVA 1JSWA 1HY0A 3C8TA 1TJVA 3GZHA 1TJUA 1T6PA 2YIIA 1K62A 4C6GA 3BHGA 2PTRA 1VDKA 4C5UA 4HGVA 2RJRA 1GKJA 4BABA 1U16A 3R6VA 5EYVA 3QBPA 1C3CA 2PTSA 3TV2A 1GKMA 2QGAB 4V2RA 4C5SA 1FUQA 2RJSA 1B8FA 5HW2A 1I0AA 3KDZA 1FUPA 1EB4A 1FUOA 1U15A 4BAAA 2J91A 1T6JA 1RE5A 2O7BA 1DCNA 1GK2A 1FURA 3OCEA 3E04A 5D6BA 2E9FA 2PTQA 2O6YA 4NLEA 1TJWA 1XWOA 5F92A 2O7FA 1K7WA 5F91A 1TJ7A 3RD8A 2O7EA 2NYNA 4FFXA 1J3UA 1GK3A 4EEIA 1YFMA 3R6YA 1Q5NA 3NZ4A 1YFEA 4ADMA 4C5RA 2O78A 3CZOA 3KDYA 3NO9A 2NYFA 5EYTA 1C3UA 4FLCA 2OHYA 1YISA 2PFMA 1W27A 4ADLA 2FUSA 1Y2MA 3R6QA 1DOFA 2VD6A 2O7DA 3OCFA 4APAA 4EFCA 4V2QA 2HVGA 2QVEA 1HY1A
chains in the Genus database with same CATH superfamily
4CQ5A 1AUWA 1KQ7A 2X75A 4NSLA 3GTDA 2FELA 4MX2A 1Q92A 4APBA 3F4RA 2VL7A 3RRPA 3UNVA 1JSWA 1HY0A 3C8TA 1TJVA 1XMCA 3GZHA 1Z4IA 1XL7A 4MWOA 1TJUA 1T6PA 2YIIA 2JAUA 1K62A 1T9HA 4C6GA 3BHGA 4WNLA 2JAWA 2PTRA 1XL8A 1VDKA 4C5UA 4HGVA 2RJRA 1GKJA 4BABA 4A15A 1U16A 3R6VA 5EYVA 2RCNA 3QBPA 4NFLA 5M0IA 1C3CA 2PTSA 2JARA 1Z4PX 3TV2A 1GKMA 1Z4LA 1Z4KA 2QGAB 4V2RA 4C5SA 1FUQA 3F4TA 2RJSA 1B8FA 5HW2A 2YV5A 1I0AA 4E88A 3KDZA 1FUPA 1EB4A 1FUOA 1U15A 2D27A 3CRVA 5M0JA 3BWVA 2VSFA 4BAAA 4YIKA 2J91A 1T6JA 1RE5A 2O7BA 1DCNA 4L6CA 1GK2A 1FURA 3OCEA 1MH9A 3E04A 5D6BA 2E9FA 2PTQA 2O6YA 4NLEA 1TJWA 1XWOA 5F92A 2O7FA 1IW7D 1K7WA 3U19A 1XMDA 5F91A 2JAOA 1TJ7A 1U0LA 2D28C 3CRW1 3RD8A 2O7EA 2NYNA 4MUMA 4FFXA 3CI0K 1J3UA 1GK3A 2I7DA 4EEIA 1YFMA 3R6YA 1XLYA 1Q5NA 1Z4JA 3NZ4A 1YFEA 4ADMA 4C5RA 2O78A 3F4SA 3CZOA 3KDYA 3NO9A 3U13A 2NYFA 5EYTA 1C3UA 4FLCA 2OHYA 1YISA 2PFMA 4L6AA 5H8WA 1Z4QA 1W27A 4ADLA 2FUSA 1Y2MA 3R6QA 1DOFA 2VD6A 2O7DA 1Z4MA 4IQJM 3OCFA 4APAA 2FENA 4EFCA 4V2QA 2HVGA 4YIHA 1Q91A 4L57A 2QVEA 1HY1A
chains in the Genus database with same CATH topology
4CQ5A 1AUWA 1KQ7A 2X75A 4NSLA 3GTDA 4MX2A 4APBA 3RRPA 3UNVA 1JSWA 1HY0A 3C8TA 1TJVA 3GZHA 1TJUA 1T6PA 2YIIA 1K62A 4C6GA 3BHGA 2PTRA 1VDKA 4C5UA 4HGVA 2RJRA 1GKJA 4BABA 1U16A 3R6VA 5EYVA 3QBPA 1C3CA 2PTSA 3TV2A 1GKMA 2QGAB 4V2RA 4C5SA 1FUQA 2RJSA 1B8FA 5HW2A 1I0AA 3KDZA 1FUPA 1EB4A 1FUOA 1U15A 4BAAA 2J91A 1T6JA 1RE5A 2O7BA 1DCNA 1GK2A 1FURA 3OCEA 3E04A 5D6BA 2E9FA 2PTQA 2O6YA 4NLEA 1TJWA 1XWOA 5F92A 2O7FA 1K7WA 5F91A 1TJ7A 3RD8A 2O7EA 2NYNA 4FFXA 1J3UA 1GK3A 4EEIA 1YFMA 3R6YA 1Q5NA 3NZ4A 1YFEA 4ADMA 4C5RA 2O78A 3CZOA 3KDYA 3NO9A 2NYFA 5EYTA 1C3UA 4FLCA 2OHYA 1YISA 2PFMA 1W27A 4ADLA 2FUSA 1Y2MA 3R6QA 1DOFA 2VD6A 2O7DA 3OCFA 4APAA 4EFCA 4V2QA 2HVGA 2QVEA 1HY1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CQ5 A;  1AUW A;  1KQ7 A;  2X75 A;  4NSL A;  3GTD A;  4MX2 A;  4APB A;  3RRP A;  3UNV A;  1JSW A;  1HY0 A;  3C8T A;  1TJV A;  3GZH A;  1TJU A;  1T6P A;  2YII A;  1K62 A;  4C6G A;  3BHG A;  2PTR A;  1VDK A;  4C5U A;  4HGV A;  2RJR A;  1GKJ A;  4BAB A;  1U16 A;  3R6V A;  5EYV A;  3QBP A;  1C3C A;  2PTS A;  3TV2 A;  1GKM A;  2QGA B;  4V2R A;  4C5S A;  1FUQ A;  2RJS A;  1B8F A;  5HW2 A;  1I0A A;  3KDZ A;  1FUP A;  1EB4 A;  1FUO A;  1U15 A;  4BAA A;  2J91 A;  1T6J A;  1RE5 A;  2O7B A;  1DCN A;  1GK2 A;  1FUR A;  3OCE A;  3E04 A;  5D6B A;  2E9F A;  2PTQ A;  2O6Y A;  4NLE A;  1TJW A;  1XWO A;  5F92 A;  2O7F A;  1K7W A;  5F91 A;  1TJ7 A;  3RD8 A;  2O7E A;  2NYN A;  4FFX A;  1J3U A;  1GK3 A;  4EEI A;  1YFM A;  3R6Y A;  1Q5N A;  3NZ4 A;  1YFE A;  4ADM A;  4C5R A;  2O78 A;  3CZO A;  3KDY A;  3NO9 A;  2NYF A;  5EYT A;  1C3U A;  4FLC A;  2OHY A;  1YIS A;  2PFM A;  1W27 A;  4ADL A;  2FUS A;  1Y2M A;  3R6Q A;  1DOF A;  2VD6 A;  2O7D A;  3OCF A;  4APA A;  4EFC A;  4V2Q A;  2HVG A;  2QVE A;  1HY1 A; 
#chains in the Genus database with same CATH topology
 4CQ5 A;  1AUW A;  1KQ7 A;  2X75 A;  4NSL A;  3GTD A;  2FEL A;  4MX2 A;  1Q92 A;  4APB A;  3F4R A;  2VL7 A;  3RRP A;  3UNV A;  1JSW A;  1HY0 A;  3C8T A;  1TJV A;  1XMC A;  3GZH A;  1Z4I A;  1XL7 A;  4MWO A;  1TJU A;  1T6P A;  2YII A;  2JAU A;  1K62 A;  1T9H A;  4C6G A;  3BHG A;  4WNL A;  2JAW A;  2PTR A;  1XL8 A;  1VDK A;  4C5U A;  4HGV A;  2RJR A;  1GKJ A;  4BAB A;  4A15 A;  1U16 A;  3R6V A;  5EYV A;  2RCN A;  3QBP A;  4NFL A;  5M0I A;  1C3C A;  2PTS A;  2JAR A;  1Z4P X;  3TV2 A;  1GKM A;  1Z4L A;  1Z4K A;  2QGA B;  4V2R A;  4C5S A;  1FUQ A;  3F4T A;  2RJS A;  1B8F A;  5HW2 A;  2YV5 A;  1I0A A;  4E88 A;  3KDZ A;  1FUP A;  1EB4 A;  1FUO A;  1U15 A;  2D27 A;  3CRV A;  5M0J A;  3BWV A;  2VSF A;  4BAA A;  4YIK A;  2J91 A;  1T6J A;  1RE5 A;  2O7B A;  1DCN A;  4L6C A;  1GK2 A;  1FUR A;  3OCE A;  1MH9 A;  3E04 A;  5D6B A;  2E9F A;  2PTQ A;  2O6Y A;  4NLE A;  1TJW A;  1XWO A;  5F92 A;  2O7F A;  1IW7 D;  1K7W A;  3U19 A;  1XMD A;  5F91 A;  2JAO A;  1TJ7 A;  1U0L A;  2D28 C;  3CRW 1;  3RD8 A;  2O7E A;  2NYN A;  4MUM A;  4FFX A;  3CI0 K;  1J3U A;  1GK3 A;  2I7D A;  4EEI A;  1YFM A;  3R6Y A;  1XLY A;  1Q5N A;  1Z4J A;  3NZ4 A;  1YFE A;  4ADM A;  4C5R A;  2O78 A;  3F4S A;  3CZO A;  3KDY A;  3NO9 A;  3U13 A;  2NYF A;  5EYT A;  1C3U A;  4FLC A;  2OHY A;  1YIS A;  2PFM A;  4L6A A;  5H8W A;  1Z4Q A;  1W27 A;  4ADL A;  2FUS A;  1Y2M A;  3R6Q A;  1DOF A;  2VD6 A;  2O7D A;  1Z4M A;  4IQJ M;  3OCF A;  4APA A;  2FEN A;  4EFC A;  4V2Q A;  2HVG A;  4YIH A;  1Q91 A;  4L57 A;  2QVE A;  1HY1 A; 
#chains in the Genus database with same CATH homology
 4CQ5 A;  1AUW A;  1KQ7 A;  2X75 A;  4NSL A;  3GTD A;  4MX2 A;  4APB A;  3RRP A;  3UNV A;  1JSW A;  1HY0 A;  3C8T A;  1TJV A;  3GZH A;  1TJU A;  1T6P A;  2YII A;  1K62 A;  4C6G A;  3BHG A;  2PTR A;  1VDK A;  4C5U A;  4HGV A;  2RJR A;  1GKJ A;  4BAB A;  1U16 A;  3R6V A;  5EYV A;  3QBP A;  1C3C A;  2PTS A;  3TV2 A;  1GKM A;  2QGA B;  4V2R A;  4C5S A;  1FUQ A;  2RJS A;  1B8F A;  5HW2 A;  1I0A A;  3KDZ A;  1FUP A;  1EB4 A;  1FUO A;  1U15 A;  4BAA A;  2J91 A;  1T6J A;  1RE5 A;  2O7B A;  1DCN A;  1GK2 A;  1FUR A;  3OCE A;  3E04 A;  5D6B A;  2E9F A;  2PTQ A;  2O6Y A;  4NLE A;  1TJW A;  1XWO A;  5F92 A;  2O7F A;  1K7W A;  5F91 A;  1TJ7 A;  3RD8 A;  2O7E A;  2NYN A;  4FFX A;  1J3U A;  1GK3 A;  4EEI A;  1YFM A;  3R6Y A;  1Q5N A;  3NZ4 A;  1YFE A;  4ADM A;  4C5R A;  2O78 A;  3CZO A;  3KDY A;  3NO9 A;  2NYF A;  5EYT A;  1C3U A;  4FLC A;  2OHY A;  1YIS A;  2PFM A;  1W27 A;  4ADL A;  2FUS A;  1Y2M A;  3R6Q A;  1DOF A;  2VD6 A;  2O7D A;  3OCF A;  4APA A;  4EFC A;  4V2Q A;  2HVG A;  2QVE A;  1HY1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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