3R6VA

Crystal structure of aspartase from bacillus sp. ym55-1 with bound l-aspartate
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
458
structure length
458
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
total genus 157
structure length 458
sequence length 458
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3r6vA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6vA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6vA02
1TJVA 1YISA 5HW2A 4EEIA 1VDKA 3TV2A 1YFEA 4APAA 1RE5A 1HY1A 1U16A 4BAAA 2RJSA 3KDZA 1TJ7A 1DOFA 4FLCA 2PTQA 2OHYA 4NLEA 5D6BA 1EB4A 3OCEA 1GK3A 4ADLA 1AUWA 4V2RA 3C8TA 1GKMA 1KQ7A 4ADMA 2PFMA 3QBPA 4EFCA 2VD6A 4V2QA 1K7WA 2O78A 3RRPA 4C6GA 3E04A 1FUOA 1FUQA 2PTRA 4FFXA 4NSLA 2QVEA 1W27A 1T6PA 2QGAB 3GZHA 1GKJA 2O7BA 1JSWA 1Q5NA 1TJUA 2O7DA 1C3UA 1FUPA 1DCNA 4C5SA 3NZ4A 4C5UA 1T6JA 2FUSA 1Y2MA 4C5RA 3NO9A 1C3CA 2YIIA 5EYTA 1XWOA 1TJWA 3CZOA 2J91A 1FURA 2NYFA 3BHGA 1K62A 2PTSA 5F91A 4HGVA 1GK2A 2O7EA 2NYNA 3GTDA 3R6VA 1YFMA 3RD8A 2O7FA 4BABA 5EYVA 4APBA 3R6QA 2E9FA 3UNVA 2X75A 1U15A 1B8FA 1I0AA 3R6YA 1J3UA 2HVGA 3OCFA 5F92A 2RJRA 4MX2A 2O6YA 3KDYA 4CQ5A 1HY0A
chains in the Genus database with same CATH superfamily
1TJVA 1MH9A 1YISA 5HW2A 1Z4JA 4EEIA 1VDKA 3TV2A 1YFEA 2I7DA 4L6CA 1HY1A 1RE5A 1U16A 4APAA 2RJSA 4BAAA 3KDZA 1TJ7A 2JARA 1DOFA 4FLCA 1Z4KA 2PTQA 2OHYA 4YIKA 4NLEA 5D6BA 1EB4A 3OCEA 1GK3A 4ADLA 1AUWA 4V2RA 3C8TA 1GKMA 4L57A 1KQ7A 2YV5A 4ADMA 2RCNA 2PFMA 3QBPA 1Z4LA 5H8WA 4EFCA 2VD6A 4V2QA 1K7WA 1XL8A 2D27A 4L6AA 3U13A 2VSFA 2O78A 2FELA 3RRPA 4C6GA 3E04A 3CRVA 1FUOA 1FUQA 2PTRA 1XMDA 4FFXA 4NFLA 1Q92A 3U19A 4NSLA 2QVEA 3F4TA 2FENA 1W27A 1T6PA 2VL7A 2QGAB 3GZHA 1GKJA 1XLYA 1Q91A 2O7BA 1JSWA 1Q5NA 1TJUA 2O7DA 1C3UA 2D28C 1FUPA 1DCNA 4C5SA 3NZ4A 5M0JA 4C5UA 1T6JA 2FUSA 1Y2MA 4C5RA 1Z4QA 3NO9A 1C3CA 2YIIA 5EYTA 1XWOA 1TJWA 2JAOA 1Z4PX 3CZOA 2J91A 1FURA 2NYFA 3BHGA 1K62A 1XL7A 2PTSA 3BWVA 3F4RA 5F91A 3F4SA 4HGVA 2JAWA 1GK2A 2O7EA 2NYNA 1Z4IA 3GTDA 4IQJM 1Z4MA 3R6VA 1YFMA 3RD8A 4YIHA 2O7FA 4BABA 5EYVA 1IW7D 4APBA 4MWOA 3R6QA 2E9FA 3UNVA 4A15A 3CI0K 3CRW1 2X75A 1U15A 5M0IA 1U0LA 1B8FA 4WNLA 1I0AA 3R6YA 1XMCA 1J3UA 2HVGA 3OCFA 5F92A 2RJRA 1T9HA 2JAUA 4E88A 4MX2A 4MUMA 2O6YA 3KDYA 4CQ5A 1HY0A
chains in the Genus database with same CATH topology
1TJVA 1YISA 5HW2A 4EEIA 1VDKA 3TV2A 1YFEA 4APAA 1RE5A 1HY1A 1U16A 4BAAA 2RJSA 3KDZA 1TJ7A 1DOFA 4FLCA 2PTQA 2OHYA 4NLEA 5D6BA 1EB4A 3OCEA 1GK3A 4ADLA 1AUWA 4V2RA 3C8TA 1GKMA 1KQ7A 4ADMA 2PFMA 3QBPA 4EFCA 2VD6A 4V2QA 1K7WA 2O78A 3RRPA 4C6GA 3E04A 1FUOA 1FUQA 2PTRA 4FFXA 4NSLA 2QVEA 1W27A 1T6PA 2QGAB 3GZHA 1GKJA 2O7BA 1JSWA 1Q5NA 1TJUA 2O7DA 1C3UA 1FUPA 1DCNA 4C5SA 3NZ4A 4C5UA 1T6JA 2FUSA 1Y2MA 4C5RA 3NO9A 1C3CA 2YIIA 5EYTA 1XWOA 1TJWA 3CZOA 2J91A 1FURA 2NYFA 3BHGA 1K62A 2PTSA 5F91A 4HGVA 1GK2A 2O7EA 2NYNA 3GTDA 3R6VA 1YFMA 3RD8A 2O7FA 4BABA 5EYVA 4APBA 3R6QA 2E9FA 3UNVA 2X75A 1U15A 1B8FA 1I0AA 3R6YA 1J3UA 2HVGA 3OCFA 5F92A 2RJRA 4MX2A 2O6YA 3KDYA 4CQ5A 1HY0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJV A;  1YIS A;  5HW2 A;  4EEI A;  1VDK A;  3TV2 A;  1YFE A;  4APA A;  1RE5 A;  1HY1 A;  1U16 A;  4BAA A;  2RJS A;  3KDZ A;  1TJ7 A;  1DOF A;  4FLC A;  2PTQ A;  2OHY A;  4NLE A;  5D6B A;  1EB4 A;  3OCE A;  1GK3 A;  4ADL A;  1AUW A;  4V2R A;  3C8T A;  1GKM A;  1KQ7 A;  4ADM A;  2PFM A;  3QBP A;  4EFC A;  2VD6 A;  4V2Q A;  1K7W A;  2O78 A;  3RRP A;  4C6G A;  3E04 A;  1FUO A;  1FUQ A;  2PTR A;  4FFX A;  4NSL A;  2QVE A;  1W27 A;  1T6P A;  2QGA B;  3GZH A;  1GKJ A;  2O7B A;  1JSW A;  1Q5N A;  1TJU A;  2O7D A;  1C3U A;  1FUP A;  1DCN A;  4C5S A;  3NZ4 A;  4C5U A;  1T6J A;  2FUS A;  1Y2M A;  4C5R A;  3NO9 A;  1C3C A;  2YII A;  5EYT A;  1XWO A;  1TJW A;  3CZO A;  2J91 A;  1FUR A;  2NYF A;  3BHG A;  1K62 A;  2PTS A;  5F91 A;  4HGV A;  1GK2 A;  2O7E A;  2NYN A;  3GTD A;  3R6V A;  1YFM A;  3RD8 A;  2O7F A;  4BAB A;  5EYV A;  4APB A;  3R6Q A;  2E9F A;  3UNV A;  2X75 A;  1U15 A;  1B8F A;  1I0A A;  3R6Y A;  1J3U A;  2HVG A;  3OCF A;  5F92 A;  2RJR A;  4MX2 A;  2O6Y A;  3KDY A;  4CQ5 A;  1HY0 A; 
#chains in the Genus database with same CATH topology
 1TJV A;  1MH9 A;  1YIS A;  5HW2 A;  1Z4J A;  4EEI A;  1VDK A;  3TV2 A;  1YFE A;  2I7D A;  4L6C A;  1HY1 A;  1RE5 A;  1U16 A;  4APA A;  2RJS A;  4BAA A;  3KDZ A;  1TJ7 A;  2JAR A;  1DOF A;  4FLC A;  1Z4K A;  2PTQ A;  2OHY A;  4YIK A;  4NLE A;  5D6B A;  1EB4 A;  3OCE A;  1GK3 A;  4ADL A;  1AUW A;  4V2R A;  3C8T A;  1GKM A;  4L57 A;  1KQ7 A;  2YV5 A;  4ADM A;  2RCN A;  2PFM A;  3QBP A;  1Z4L A;  5H8W A;  4EFC A;  2VD6 A;  4V2Q A;  1K7W A;  1XL8 A;  2D27 A;  4L6A A;  3U13 A;  2VSF A;  2O78 A;  2FEL A;  3RRP A;  4C6G A;  3E04 A;  3CRV A;  1FUO A;  1FUQ A;  2PTR A;  1XMD A;  4FFX A;  4NFL A;  1Q92 A;  3U19 A;  4NSL A;  2QVE A;  3F4T A;  2FEN A;  1W27 A;  1T6P A;  2VL7 A;  2QGA B;  3GZH A;  1GKJ A;  1XLY A;  1Q91 A;  2O7B A;  1JSW A;  1Q5N A;  1TJU A;  2O7D A;  1C3U A;  2D28 C;  1FUP A;  1DCN A;  4C5S A;  3NZ4 A;  5M0J A;  4C5U A;  1T6J A;  2FUS A;  1Y2M A;  4C5R A;  1Z4Q A;  3NO9 A;  1C3C A;  2YII A;  5EYT A;  1XWO A;  1TJW A;  2JAO A;  1Z4P X;  3CZO A;  2J91 A;  1FUR A;  2NYF A;  3BHG A;  1K62 A;  1XL7 A;  2PTS A;  3BWV A;  3F4R A;  5F91 A;  3F4S A;  4HGV A;  2JAW A;  1GK2 A;  2O7E A;  2NYN A;  1Z4I A;  3GTD A;  4IQJ M;  1Z4M A;  3R6V A;  1YFM A;  3RD8 A;  4YIH A;  2O7F A;  4BAB A;  5EYV A;  1IW7 D;  4APB A;  4MWO A;  3R6Q A;  2E9F A;  3UNV A;  4A15 A;  3CI0 K;  3CRW 1;  2X75 A;  1U15 A;  5M0I A;  1U0L A;  1B8F A;  4WNL A;  1I0A A;  3R6Y A;  1XMC A;  1J3U A;  2HVG A;  3OCF A;  5F92 A;  2RJR A;  1T9H A;  2JAU A;  4E88 A;  4MX2 A;  4MUM A;  2O6Y A;  3KDY A;  4CQ5 A;  1HY0 A; 
#chains in the Genus database with same CATH homology
 1TJV A;  1YIS A;  5HW2 A;  4EEI A;  1VDK A;  3TV2 A;  1YFE A;  4APA A;  1RE5 A;  1HY1 A;  1U16 A;  4BAA A;  2RJS A;  3KDZ A;  1TJ7 A;  1DOF A;  4FLC A;  2PTQ A;  2OHY A;  4NLE A;  5D6B A;  1EB4 A;  3OCE A;  1GK3 A;  4ADL A;  1AUW A;  4V2R A;  3C8T A;  1GKM A;  1KQ7 A;  4ADM A;  2PFM A;  3QBP A;  4EFC A;  2VD6 A;  4V2Q A;  1K7W A;  2O78 A;  3RRP A;  4C6G A;  3E04 A;  1FUO A;  1FUQ A;  2PTR A;  4FFX A;  4NSL A;  2QVE A;  1W27 A;  1T6P A;  2QGA B;  3GZH A;  1GKJ A;  2O7B A;  1JSW A;  1Q5N A;  1TJU A;  2O7D A;  1C3U A;  1FUP A;  1DCN A;  4C5S A;  3NZ4 A;  4C5U A;  1T6J A;  2FUS A;  1Y2M A;  4C5R A;  3NO9 A;  1C3C A;  2YII A;  5EYT A;  1XWO A;  1TJW A;  3CZO A;  2J91 A;  1FUR A;  2NYF A;  3BHG A;  1K62 A;  2PTS A;  5F91 A;  4HGV A;  1GK2 A;  2O7E A;  2NYN A;  3GTD A;  3R6V A;  1YFM A;  3RD8 A;  2O7F A;  4BAB A;  5EYV A;  4APB A;  3R6Q A;  2E9F A;  3UNV A;  2X75 A;  1U15 A;  1B8F A;  1I0A A;  3R6Y A;  1J3U A;  2HVG A;  3OCF A;  5F92 A;  2RJR A;  4MX2 A;  2O6Y A;  3KDY A;  4CQ5 A;  1HY0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...