3R8KA

Crystal structure of human soul protein (hexagonal form)
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
180
structure length
180
Chain Sequence
AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNSPVKLLNRNNEVWLIQKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Heme-binding protein 2
publication title Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL.
pubmed doi rcsb
source organism Homo sapiens
total genus 40
structure length 180
sequence length 180
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04832 SOUL SOUL heme-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 3r8kA00
1EXIA 3D71A 3Q5RA 1BOWA 3Q5PA 3D6YA 3Q5SA 5KAUA 1R8EA 3D70A 4B0YA 4AYZA 2GOVA 4AYZB 5KCBA 3B49A 3E0HA 2HVAA 3Q3DA 3GK6A 3LURA 5KAVA 3Q2YA 3D6ZA 1EXJA 5GQQA 3R8JA 1JYHA 3Q1MA 3IAOA 3R8KA 2KCUA 5KATA 5KAXA 1D5YA 5KAWA 2BOWA 4A1MA
chains in the Genus database with same CATH superfamily
1EXIA 3D71A 3Q5RA 1BOWA 3Q5PA 3D6YA 3Q5SA 5KAUA 1R8EA 3D70A 4B0YA 4AYZA 2GOVA 4AYZB 5KCBA 3B49A 3E0HA 2HVAA 3Q3DA 3GK6A 3LURA 5KAVA 3Q2YA 3D6ZA 1EXJA 5GQQA 3R8JA 1JYHA 3Q1MA 3IAOA 3R8KA 2KCUA 5KATA 5KAXA 1D5YA 5KAWA 2BOWA 4A1MA
chains in the Genus database with same CATH topology
1EXIA 3D71A 3Q5RA 1BOWA 3Q5PA 3D6YA 3Q5SA 5KAUA 1R8EA 3D70A 4B0YA 4AYZA 2GOVA 4AYZB 5KCBA 3B49A 3E0HA 2HVAA 3Q3DA 3GK6A 3LURA 5KAVA 3Q2YA 3D6ZA 1EXJA 5GQQA 3R8JA 1JYHA 3Q1MA 3IAOA 3R8KA 2KCUA 5KATA 5KAXA 1D5YA 5KAWA 2BOWA 4A1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXI A;  3D71 A;  3Q5R A;  1BOW A;  3Q5P A;  3D6Y A;  3Q5S A;  5KAU A;  1R8E A;  3D70 A;  4B0Y A;  4AYZ A;  2GOV A;  4AYZ B;  5KCB A;  3B49 A;  3E0H A;  2HVA A;  3Q3D A;  3GK6 A;  3LUR A;  5KAV A;  3Q2Y A;  3D6Z A;  1EXJ A;  5GQQ A;  3R8J A;  1JYH A;  3Q1M A;  3IAO A;  3R8K A;  2KCU A;  5KAT A;  5KAX A;  1D5Y A;  5KAW A;  2BOW A;  4A1M A; 
#chains in the Genus database with same CATH topology
 1EXI A;  3D71 A;  3Q5R A;  1BOW A;  3Q5P A;  3D6Y A;  3Q5S A;  5KAU A;  1R8E A;  3D70 A;  4B0Y A;  4AYZ A;  2GOV A;  4AYZ B;  5KCB A;  3B49 A;  3E0H A;  2HVA A;  3Q3D A;  3GK6 A;  3LUR A;  5KAV A;  3Q2Y A;  3D6Z A;  1EXJ A;  5GQQ A;  3R8J A;  1JYH A;  3Q1M A;  3IAO A;  3R8K A;  2KCU A;  5KAT A;  5KAX A;  1D5Y A;  5KAW A;  2BOW A;  4A1M A; 
#chains in the Genus database with same CATH homology
 1EXI A;  3D71 A;  3Q5R A;  1BOW A;  3Q5P A;  3D6Y A;  3Q5S A;  5KAU A;  1R8E A;  3D70 A;  4B0Y A;  4AYZ A;  2GOV A;  4AYZ B;  5KCB A;  3B49 A;  3E0H A;  2HVA A;  3Q3D A;  3GK6 A;  3LUR A;  5KAV A;  3Q2Y A;  3D6Z A;  1EXJ A;  5GQQ A;  3R8J A;  1JYH A;  3Q1M A;  3IAO A;  3R8K A;  2KCU A;  5KAT A;  5KAX A;  1D5Y A;  5KAW A;  2BOW A;  4A1M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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