The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
121
|
sequence length |
365
|
structure length |
355
|
Chain Sequence |
b'NVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDDVIDRTKRTLRKRM'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for methyl transfer by a radical SAM enzyme.
pubmed doi rcsb |
| molecule keywords |
Ribosomal RNA large subunit methyltransferase N
|
| source organism |
Escherichia coli
|
| molecule tags |
Oxidoreductase
|
| total genus |
121
|
| structure length |
355
|
| sequence length |
365
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.1.1.192: 23S rRNA (adenine(2503)-C(2))-methyltransferase. |
| pdb deposition date | 2011-04-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04055 | Radical_SAM | Radical SAM superfamily |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | DNA polymerase; domain 1 | DNA polymerase; domain 1 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I |
