3RHUA

Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
150
structure length
141
Chain Sequence
YSIEVRTHSALHVVKGAVVKTAGSDAKWTTSTYVKGNKGVLIVKAALEPDKWGIAAIEALANEKVKENAPIKIYELPREEAEKMFGEDMYDILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords SC_1wnu
publication title Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 40
structure length 141
sequence length 150
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.20 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 3rhuA02
3.30.980.10 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase; Chain A, domain 2 Threonyl-trna Synthetase; Chain A, domain 2 3rhuA01
1WXOA 3WQZA 1QF6A 2ZTGA 3RHUA 1WNUA 2ZZFA 2ZZEA 1NYRA 2E1BA 1NYQA 2ZZGA 3KEWA 1TJEA 1TKEA 1V4PA 1TKYA 3RFNA 1TKGA 1V7OA
chains in the Genus database with same CATH superfamily
1WXOA 3WQZA 2ZTGA 3RHUA 4A11A 3ZX5A 1WNUA 4TZ4A 1NYRA 3EI1A 1NYQA 2EWJA 2ZZGA 3KEWA 3I7HA 1TKYA 3RFNA 3I7OA 4CI3A 3E0CA 1ECRA 3I7KA 3ZW7A 2ZZFA 2IUTA 2E1BA 3ZWDA 4XR2A 4XR1A 2I05A 3EI4A 3ZTWA 3ZTYA 4CI1A 3EI3A 1V4PA 4AR1A 4XR0A 2IUSA 4A0BA 3ZUPA 4E54A 3ZX4A 3I8CA 1XVIA 2B5MA 3I8EA 2B5LA 2IUUA 3ZWKA 3I7PA 2I06A 2ZOSA 1TJEA 4A0AA 4CI2A 2Y50A 1TKEA 4AR8A 1QF6A 3EI2A 1WZCA 3I89A 4E5ZA 2Y6IA 3I7LA 4ARFA 2ZZEA 4A08A 3I7NA 4AREA 4A09A 4AR9A 3ZU6A 4XR3A 2HYEA 5FQDA 1TKGA 2Y3UA 1V7OA
chains in the Genus database with same CATH topology
1WXOA 2IUSA 3WQZA 1QF6A 1ECRA 2ZTGA 4A0BA 3I7KA 3EI2A 3RHUA 4A11A 3I89A 4E5ZA 4E54A 2Y6IA 3I7LA 1WNUA 4ARFA 2ZZFA 2ZZEA 3I8CA 4A08A 4TZ4A 2B5MA 1NYRA 2IUTA 3I8EA 3I7NA 4AREA 4A09A 4AR9A 2B5LA 2E1BA 3EI1A 2IUUA 1NYQA 4XR2A 4XR1A 2EWJA 2I05A 2ZZGA 2Y3UA 3KEWA 3I7PA 4XR3A 3EI4A 2I06A 4CI1A 2HYEA 3I7HA 1TJEA 5FQDA 4CI2A 3E0CA 4A0AA 2Y50A 3EI3A 1TKEA 1V4PA 1TKYA 3RFNA 1TKGA 3I7OA 4CI3A 4AR1A 4AR8A 4XR0A 1V7OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WXO A;  3WQZ A;  1QF6 A;  2ZTG A;  3RHU A;  1WNU A;  2ZZF A;  2ZZE A;  1NYR A;  2E1B A;  1NYQ A;  2ZZG A;  3KEW A;  1TJE A;  1TKE A;  1V4P A;  1TKY A;  3RFN A;  1TKG A;  1V7O A; 
#chains in the Genus database with same CATH topology
 1WXO A;  3WQZ A;  2ZTG A;  3RHU A;  4A11 A;  3ZX5 A;  1WNU A;  4TZ4 A;  1NYR A;  3EI1 A;  1NYQ A;  2EWJ A;  2ZZG A;  3KEW A;  3I7H A;  1TKY A;  3RFN A;  3I7O A;  4CI3 A;  3E0C A;  1ECR A;  3I7K A;  3ZW7 A;  2ZZF A;  2IUT A;  2E1B A;  3ZWD A;  4XR2 A;  4XR1 A;  2I05 A;  3EI4 A;  3ZTW A;  3ZTY A;  4CI1 A;  3EI3 A;  1V4P A;  4AR1 A;  4XR0 A;  2IUS A;  4A0B A;  3ZUP A;  4E54 A;  3ZX4 A;  3I8C A;  1XVI A;  2B5M A;  3I8E A;  2B5L A;  2IUU A;  3ZWK A;  3I7P A;  2I06 A;  2ZOS A;  1TJE A;  4A0A A;  4CI2 A;  2Y50 A;  1TKE A;  4AR8 A;  1QF6 A;  3EI2 A;  1WZC A;  3I89 A;  4E5Z A;  2Y6I A;  3I7L A;  4ARF A;  2ZZE A;  4A08 A;  3I7N A;  4ARE A;  4A09 A;  4AR9 A;  3ZU6 A;  4XR3 A;  2HYE A;  5FQD A;  1TKG A;  2Y3U A;  1V7O A; 
#chains in the Genus database with same CATH homology
 1WXO A;  2IUS A;  3WQZ A;  1QF6 A;  1ECR A;  2ZTG A;  4A0B A;  3I7K A;  3EI2 A;  3RHU A;  4A11 A;  3I89 A;  4E5Z A;  4E54 A;  2Y6I A;  3I7L A;  1WNU A;  4ARF A;  2ZZF A;  2ZZE A;  3I8C A;  4A08 A;  4TZ4 A;  2B5M A;  1NYR A;  2IUT A;  3I8E A;  3I7N A;  4ARE A;  4A09 A;  4AR9 A;  2B5L A;  2E1B A;  3EI1 A;  2IUU A;  1NYQ A;  4XR2 A;  4XR1 A;  2EWJ A;  2I05 A;  2ZZG A;  2Y3U A;  3KEW A;  3I7P A;  4XR3 A;  3EI4 A;  2I06 A;  4CI1 A;  2HYE A;  3I7H A;  1TJE A;  5FQD A;  4CI2 A;  3E0C A;  4A0A A;  2Y50 A;  3EI3 A;  1TKE A;  1V4P A;  1TKY A;  3RFN A;  1TKG A;  3I7O A;  4CI3 A;  4AR1 A;  4AR8 A;  4XR0 A;  1V7O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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