3RJ3D

Complement components factor h ccp19-20 (s1191l mutant) and c3d in complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
125
structure length
125
Chain Sequence
GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYLRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Complement C3d fragment
publication title Structural and functional characterization of the product of disease-related factor h gene conversion.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 125
sequence length 125
chains with identical sequence E, F
ec nomenclature
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3rj3D01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3rj3D02
1GKNA 1UOTP 4AYIA 3R62A 2BZMA 4AYDA 2V8EA 1QO6A 2RKYA 3OP8A 2QY0A 5FO8C 2RL0A 3TVJA 5HZPB 4FXGG 2XQWC 3O8EB 4B2SA 5HYPA 4MUCA 1OJVA 1O9AA 4DJZA 3ZRZA 3INBC 2KMSA 1SS2A 1Z92B 3NFPI 2CKUA 3KZJA 3GOVA 4ONTD 2CG6A 2EC3A 2MCZA 3KXVA 2ERJA 1QGBA 2JGWA 2XRBA 2UWNA 2WIIC 2RKZA 1MD8A 2XRDA 3T5OA 4ZH1D 5I0QB 5JPMG 2IZ3A 1OK1A 2RLPA 3ZD2A 4K12A 5HYUB 1GKGA 1VVDA 1TPGA 2CG7A 3OEDC 1ELVA 1LY2A 1VVCA 3GXEA 2JGXA 2EHFA 2XWBF 4WJG2 1H2QP 2YBYA 3MQLA 2YRAA 1NWVA 1H2PP 3CALA 2IZ4A 3ERBA 2MCYA 1OJWA 1FBRA 2A55A 2XWJI 4F4OC 1OK9A 3ZD1A 2G7IA 4IGDA 1OK3A 1TPMA 4YNXA 4AYMA 3IX0A 2JRAA 1H03P 4JHSA 2W81A 3EJHA 1H04P 3OXUD 4B2RA 4PZ5A 1E5GA 1HFIA 2W80A 4AYEA 1HFHA 1C1ZA 4CSYA 2O39C 4J38B 2B5ID 1OK2A 2LOJA 1E88A 4KKDA 5HYTB 1SRZA 4LOTA 4C16A 1OJYA 3M7PA 1E8BA 1TPNA 1PPQA 3IU3I 1G4FA 3L89M 4LOSA 1ZJKA 1MD7A 1G4GA 4A5WB 2RLQA 3SW0X 1GPZA 1HCCA 1U5MA 3RJ3D 1QUBA 1CKLA 2KRIA 1Q3XA 1GHQB
chains in the Genus database with same CATH superfamily
1GKNA 1UOTP 4AYIA 3R62A 2BZMA 1RLHA 4AYDA 2V8EA 1QO6A 2RKYA 3OP8A 3CI0J 2QY0A 5FO8C 2RL0A 4N7EA 3TVJA 5HZPB 5DN4A 4FXGG 2XQWC 3O8EB 4B2SA 5HYPA 2ZYCA 4MSLA 4MUCA 1OJVA 1O9AA 4DJZA 3ZRZA 3INBC 2KMSA 1SS2A 1Z92B 3NFPI 2CKUA 3KZJA 4APLA 3GOVA 4ONTD 2CG6A 2EC3A 2MCZA 3KXVA 2ERJA 1QGBA 2JGWA 2XRBA 2UWNA 2WIIC 2RKZA 3WSXA 1MD8A 2XRDA 3T5OA 4ZH1D 5I0QB 2I2LA 2IZ3A 1OK1A 2RLPA 5JPMG 3ZD2A 4K12A 5HYUB 1GKGA 4PO7A 1VVDA 1TPGA 2CG7A 3OEDC 4YIZA 1ELVA 1LY2A 1VVCA 3GXEA 2JGXA 2EHFA 3FGRA 2XWBF 4WJG2 1H2QP 2YBYA 3MQLA 2YRAA 1NWVA 3NJAA 3ZLEA 1H2PP 3CALA 2IZ4A 3ERBA 3VWOA 2MCYA 1OJWA 1FBRA 2A55A 2XWJI 4F4OC 1OK9A 3ZD1A 2G7IA 4IGDA 1OK3A 1TPMA 3ZLDA 4YNXA 4AYMA 3F6KA 3IX0A 2Y8TA 2JRAA 1H03P 4JHSA 2W81A 3EJHA 1H04P 3OXUD 2Y8SA 4B2RA 4PZ5A 1E5GA 1HFIA 2W80A 2Y8RA 2X2ZA 1HFHA 1C1ZA 4AYEA 4CSYA 2O39C 4J38B 2B5ID 1OK2A 2LOJA 1E88A 4KKDA 3K3TA 5HYTB 1SRZA 4LOTA 4C16A 1OJYA 3M7PA 1E8BA 1TPNA 1PPQA 3IU3I 1G4FA 3L89M 3FGTA 4LOSA 3WSYA 4BWCA 1ZJKA 1MD7A 1G4GA 4A5WB 2RLQA 3SW0X 1GPZA 1HCCA 1U5MA 5DN5A 1QUBA 1CKLA 3RJ3D 2KRIA 1Q3XA 1GHQB
chains in the Genus database with same CATH topology
1GKNA 1UOTP 4AYIA 3R62A 2BZMA 4AYDA 2V8EA 1QO6A 2RKYA 3OP8A 2QY0A 5FO8C 2RL0A 3TVJA 5HZPB 4FXGG 2XQWC 3O8EB 4B2SA 5HYPA 4MUCA 1OJVA 1O9AA 4DJZA 3ZRZA 3INBC 2KMSA 1SS2A 1Z92B 3NFPI 2CKUA 3KZJA 3GOVA 4ONTD 2CG6A 2EC3A 2MCZA 3KXVA 2ERJA 1QGBA 2JGWA 2XRBA 2UWNA 2WIIC 2RKZA 1MD8A 2XRDA 3T5OA 4ZH1D 5I0QB 5JPMG 2IZ3A 1OK1A 2RLPA 3ZD2A 4K12A 5HYUB 1GKGA 1VVDA 1TPGA 2CG7A 3OEDC 1ELVA 1LY2A 1VVCA 3GXEA 2JGXA 2EHFA 2XWBF 4WJG2 1H2QP 2YBYA 3MQLA 2YRAA 1NWVA 1H2PP 3CALA 2IZ4A 3ERBA 2MCYA 1OJWA 1FBRA 2A55A 2XWJI 4F4OC 1OK9A 3ZD1A 2G7IA 4IGDA 1OK3A 1TPMA 4YNXA 4AYMA 3IX0A 2JRAA 1H03P 4JHSA 2W81A 3EJHA 1H04P 3OXUD 4B2RA 4PZ5A 1E5GA 1HFIA 2W80A 4AYEA 1HFHA 1C1ZA 4CSYA 2O39C 4J38B 2B5ID 1OK2A 2LOJA 1E88A 4KKDA 5HYTB 1SRZA 4LOTA 4C16A 1OJYA 3M7PA 1E8BA 1TPNA 1PPQA 3IU3I 1G4FA 3L89M 4LOSA 1ZJKA 1MD7A 1G4GA 4A5WB 2RLQA 3SW0X 1GPZA 1HCCA 1U5MA 3RJ3D 1QUBA 1CKLA 2KRIA 1Q3XA 1GHQB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GKN A;  1UOT P;  4AYI A;  3R62 A;  2BZM A;  4AYD A;  2V8E A;  1QO6 A;  2RKY A;  3OP8 A;  2QY0 A;  5FO8 C;  2RL0 A;  3TVJ A;  5HZP B;  4FXG G;  2XQW C;  3O8E B;  4B2S A;  5HYP A;  4MUC A;  1OJV A;  1O9A A;  4DJZ A;  3ZRZ A;  3INB C;  2KMS A;  1SS2 A;  1Z92 B;  3NFP I;  2CKU A;  3KZJ A;  3GOV A;  4ONT D;  2CG6 A;  2EC3 A;  2MCZ A;  3KXV A;  2ERJ A;  1QGB A;  2JGW A;  2XRB A;  2UWN A;  2WII C;  2RKZ A;  1MD8 A;  2XRD A;  3T5O A;  4ZH1 D;  5I0Q B;  5JPM G;  2IZ3 A;  1OK1 A;  2RLP A;  3ZD2 A;  4K12 A;  5HYU B;  1GKG A;  1VVD A;  1TPG A;  2CG7 A;  3OED C;  1ELV A;  1LY2 A;  1VVC A;  3GXE A;  2JGX A;  2EHF A;  2XWB F;  4WJG 2;  1H2Q P;  2YBY A;  3MQL A;  2YRA A;  1NWV A;  1H2P P;  3CAL A;  2IZ4 A;  3ERB A;  2MCY A;  1OJW A;  1FBR A;  2A55 A;  2XWJ I;  4F4O C;  1OK9 A;  3ZD1 A;  2G7I A;  4IGD A;  1OK3 A;  1TPM A;  4YNX A;  4AYM A;  3IX0 A;  2JRA A;  1H03 P;  4JHS A;  2W81 A;  3EJH A;  1H04 P;  3OXU D;  4B2R A;  4PZ5 A;  1E5G A;  1HFI A;  2W80 A;  4AYE A;  1HFH A;  1C1Z A;  4CSY A;  2O39 C;  4J38 B;  2B5I D;  1OK2 A;  2LOJ A;  1E88 A;  4KKD A;  5HYT B;  1SRZ A;  4LOT A;  4C16 A;  1OJY A;  3M7P A;  1E8B A;  1TPN A;  1PPQ A;  3IU3 I;  1G4F A;  3L89 M;  4LOS A;  1ZJK A;  1MD7 A;  1G4G A;  4A5W B;  2RLQ A;  3SW0 X;  1GPZ A;  1HCC A;  1U5M A;  3RJ3 D;  1QUB A;  1CKL A;  2KRI A;  1Q3X A;  1GHQ B; 
#chains in the Genus database with same CATH topology
 1GKN A;  1UOT P;  4AYI A;  3R62 A;  2BZM A;  1RLH A;  4AYD A;  2V8E A;  1QO6 A;  2RKY A;  3OP8 A;  3CI0 J;  2QY0 A;  5FO8 C;  2RL0 A;  4N7E A;  3TVJ A;  5HZP B;  5DN4 A;  4FXG G;  2XQW C;  3O8E B;  4B2S A;  5HYP A;  2ZYC A;  4MSL A;  4MUC A;  1OJV A;  1O9A A;  4DJZ A;  3ZRZ A;  3INB C;  2KMS A;  1SS2 A;  1Z92 B;  3NFP I;  2CKU A;  3KZJ A;  4APL A;  3GOV A;  4ONT D;  2CG6 A;  2EC3 A;  2MCZ A;  3KXV A;  2ERJ A;  1QGB A;  2JGW A;  2XRB A;  2UWN A;  2WII C;  2RKZ A;  3WSX A;  1MD8 A;  2XRD A;  3T5O A;  4ZH1 D;  5I0Q B;  2I2L A;  2IZ3 A;  1OK1 A;  2RLP A;  5JPM G;  3ZD2 A;  4K12 A;  5HYU B;  1GKG A;  4PO7 A;  1VVD A;  1TPG A;  2CG7 A;  3OED C;  4YIZ A;  1ELV A;  1LY2 A;  1VVC A;  3GXE A;  2JGX A;  2EHF A;  3FGR A;  2XWB F;  4WJG 2;  1H2Q P;  2YBY A;  3MQL A;  2YRA A;  1NWV A;  3NJA A;  3ZLE A;  1H2P P;  3CAL A;  2IZ4 A;  3ERB A;  3VWO A;  2MCY A;  1OJW A;  1FBR A;  2A55 A;  2XWJ I;  4F4O C;  1OK9 A;  3ZD1 A;  2G7I A;  4IGD A;  1OK3 A;  1TPM A;  3ZLD A;  4YNX A;  4AYM A;  3F6K A;  3IX0 A;  2Y8T A;  2JRA A;  1H03 P;  4JHS A;  2W81 A;  3EJH A;  1H04 P;  3OXU D;  2Y8S A;  4B2R A;  4PZ5 A;  1E5G A;  1HFI A;  2W80 A;  2Y8R A;  2X2Z A;  1HFH A;  1C1Z A;  4AYE A;  4CSY A;  2O39 C;  4J38 B;  2B5I D;  1OK2 A;  2LOJ A;  1E88 A;  4KKD A;  3K3T A;  5HYT B;  1SRZ A;  4LOT A;  4C16 A;  1OJY A;  3M7P A;  1E8B A;  1TPN A;  1PPQ A;  3IU3 I;  1G4F A;  3L89 M;  3FGT A;  4LOS A;  3WSY A;  4BWC A;  1ZJK A;  1MD7 A;  1G4G A;  4A5W B;  2RLQ A;  3SW0 X;  1GPZ A;  1HCC A;  1U5M A;  5DN5 A;  1QUB A;  1CKL A;  3RJ3 D;  2KRI A;  1Q3X A;  1GHQ B; 
#chains in the Genus database with same CATH homology
 1GKN A;  1UOT P;  4AYI A;  3R62 A;  2BZM A;  4AYD A;  2V8E A;  1QO6 A;  2RKY A;  3OP8 A;  2QY0 A;  5FO8 C;  2RL0 A;  3TVJ A;  5HZP B;  4FXG G;  2XQW C;  3O8E B;  4B2S A;  5HYP A;  4MUC A;  1OJV A;  1O9A A;  4DJZ A;  3ZRZ A;  3INB C;  2KMS A;  1SS2 A;  1Z92 B;  3NFP I;  2CKU A;  3KZJ A;  3GOV A;  4ONT D;  2CG6 A;  2EC3 A;  2MCZ A;  3KXV A;  2ERJ A;  1QGB A;  2JGW A;  2XRB A;  2UWN A;  2WII C;  2RKZ A;  1MD8 A;  2XRD A;  3T5O A;  4ZH1 D;  5I0Q B;  5JPM G;  2IZ3 A;  1OK1 A;  2RLP A;  3ZD2 A;  4K12 A;  5HYU B;  1GKG A;  1VVD A;  1TPG A;  2CG7 A;  3OED C;  1ELV A;  1LY2 A;  1VVC A;  3GXE A;  2JGX A;  2EHF A;  2XWB F;  4WJG 2;  1H2Q P;  2YBY A;  3MQL A;  2YRA A;  1NWV A;  1H2P P;  3CAL A;  2IZ4 A;  3ERB A;  2MCY A;  1OJW A;  1FBR A;  2A55 A;  2XWJ I;  4F4O C;  1OK9 A;  3ZD1 A;  2G7I A;  4IGD A;  1OK3 A;  1TPM A;  4YNX A;  4AYM A;  3IX0 A;  2JRA A;  1H03 P;  4JHS A;  2W81 A;  3EJH A;  1H04 P;  3OXU D;  4B2R A;  4PZ5 A;  1E5G A;  1HFI A;  2W80 A;  4AYE A;  1HFH A;  1C1Z A;  4CSY A;  2O39 C;  4J38 B;  2B5I D;  1OK2 A;  2LOJ A;  1E88 A;  4KKD A;  5HYT B;  1SRZ A;  4LOT A;  4C16 A;  1OJY A;  3M7P A;  1E8B A;  1TPN A;  1PPQ A;  3IU3 I;  1G4F A;  3L89 M;  4LOS A;  1ZJK A;  1MD7 A;  1G4G A;  4A5W B;  2RLQ A;  3SW0 X;  1GPZ A;  1HCC A;  1U5M A;  3RJ3 D;  1QUB A;  1CKL A;  2KRI A;  1Q3X A;  1GHQ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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