3RJAA

Crystal structure of carbohydrate oxidase from microdochium nivale in complex with substrate analogue
Total Genus 172
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
molecule tags Oxidoreductase
source organism Microdochium nivale
molecule keywords Carbohydrate oxidase
total genus 172
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rjaA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rjaA02
5L6GA 2BVFA 4PZFA 3RJAA 3W8ZA 3FW9A 4PWBA 3POPA 5K8EA 3D2DA 3GSYA 4PVEA 4DNSA 4PVHA 3D2JA 2Y08A 3FW8A 4PWCA 3HSUA 2BVHA 2UUUA 3FWAA 4UD8A 3PQBA 5I1VA 2Y4GA 2IPIA 3RJ8A 5D79A 5I1WA 2Y3RA 2AXRA 3TSHA 3TSJA 5L6FA 3D2HA 2BVGA 5AWVA 4PVJA 3FW7A 3W8XA 2Y3SA 3W8WA 4XLOA 3VTEA 2UUVA 1ZR6A 2WDWA 4EC3A 4PVKA
chains in the Genus database with same CATH superfamily
1UXYA 2BVFA 1WVEA 3W8ZA 5HHZA 1WYGA 1N61C 3I99A 1QLUA 3LAEA 3NS1B 3NRZB 4PVHA 3D2JA 3AM9A 3S1DA 3AN1A 2VFSA 1E0YA 2R2ZA 3FWAA 1T3QC 3TX1A 2NQWA 3RJ8A 2P3HA 3LLBA 3SR6B 5I1WA 2Y3RA 3TSHA 3NVYB 1FFUC 3C0PA 1N63C 3FW7A 1N60C 2P13A 1W1JA 3W8XA 5AE3A 2PLSA 1QLTA 2E3TA 1MBBA 2RK5A 3NVVB 5FXPA 4BC7A 3DEDA 1E8HA 5K8EA 5AE1A 4ZOHB 1W1OA 2P4PA 1DIIA 3GSYA 2BVHA 3DQ0A 1FO4A 2O3GA 3EUB3 2GQTA 3NVZB 4BCAA 1N5XA 5G5GB 3BW7A 3PM9A 2AXRA 5AE2A 5L6FA 5HQXA 2BVGA 4OALA 1W1SA 5ADZA 2Q85A 3S1CA 2MBRA 1SB3B 1ZXIC 4XLOA 1ZR6A 4PVKA 5FXEA 4PZFA 3RJAA 5G5HB 3JS8A 4BBYA 1RM6B 2VFVA 3FW9A 3POPA 4PYTA 3B9JB 5FXDA 2VFTA 1W1RA 2W55A 2Y08A 1W1KA 2YVSA 3FW8A 3HSUA 4PWCA 3S1FA 1HSKA 2GQUA 4UD8A 3PQBA 2Q4WA 1DZNA 3AMZA 1MBTA 2W54A 1W1LA 1JROA 2I0KA 3NVWB 1AHUA 4PVJA 5AWVA 5HMRA 3ETRB 2W3SA 1I19A 1AHVA 1E8FA 4EC3A 5L6GA 2PLIA 4JAYA 2OAIA 1DIQA 1WVFA 1VDVA 4MLAA 1F0XA 4PWBA 5FXFA 2VAOA 2QKNA 3D2DA 4ML8A 4PVEA 4DNSA 1W1QA 1V97A 1FIQB 2UUUA 1N62C 3HRDC 1FFVC 2VFRA 5I1VA 2Y4GA 2IPIA 1AHZA 2W3RA 5D79A 1JRPA 2VFUA 4HG0A 3TSJA 3S1EA 3D2HA 1N5WC 3KJMA 2EXRA 1E8GA 1W1MA 2Y3SA 4JB1A 3W8WA 3VTEA 2QPMA 2UUVA 2WDWA 4O95A 4BC9A 1VAOA 2R8DA
chains in the Genus database with same CATH topology
1UXYA 2BVFA 1WVEA 3W8ZA 5HHZA 1WYGA 1N61C 3I99A 1QLUA 3LAEA 3NS1B 3NRZB 4PVHA 3D2JA 3AM9A 3S1DA 3AN1A 2VFSA 1E0YA 2R2ZA 3FWAA 1T3QC 3TX1A 2NQWA 3RJ8A 2P3HA 3LLBA 3SR6B 5I1WA 2Y3RA 3TSHA 3NVYB 1FFUC 3C0PA 1N63C 3FW7A 1N60C 2P13A 1W1JA 3W8XA 5AE3A 2PLSA 1QLTA 2E3TA 1MBBA 2RK5A 3NVVB 5FXPA 4BC7A 3DEDA 1E8HA 5K8EA 5AE1A 4ZOHB 1W1OA 2P4PA 1DIIA 3GSYA 2BVHA 3DQ0A 1FO4A 2O3GA 3EUB3 2GQTA 3NVZB 4BCAA 1N5XA 5G5GB 3BW7A 3PM9A 2AXRA 5AE2A 5L6FA 5HQXA 2BVGA 4OALA 1W1SA 5ADZA 2Q85A 3S1CA 2MBRA 1SB3B 1ZXIC 4XLOA 1ZR6A 4PVKA 5FXEA 4PZFA 3RJAA 5G5HB 3JS8A 4BBYA 1RM6B 2VFVA 3FW9A 3POPA 4PYTA 3B9JB 5FXDA 2VFTA 1W1RA 2W55A 2Y08A 1W1KA 2YVSA 3FW8A 3HSUA 4PWCA 3S1FA 1HSKA 2GQUA 4UD8A 3PQBA 2Q4WA 1DZNA 3AMZA 1MBTA 2W54A 1W1LA 1JROA 2I0KA 3NVWB 1AHUA 4PVJA 5AWVA 5HMRA 3ETRB 2W3SA 1I19A 1AHVA 1E8FA 4EC3A 5L6GA 2PLIA 4JAYA 2OAIA 1DIQA 1WVFA 1VDVA 4MLAA 1F0XA 4PWBA 5FXFA 2VAOA 2QKNA 3D2DA 4ML8A 4PVEA 4DNSA 1W1QA 1V97A 1FIQB 2UUUA 1N62C 3HRDC 1FFVC 2VFRA 5I1VA 2Y4GA 2IPIA 1AHZA 2W3RA 5D79A 1JRPA 2VFUA 4HG0A 3TSJA 3S1EA 3D2HA 1N5WC 3KJMA 2EXRA 1E8GA 1W1MA 2Y3SA 4JB1A 3W8WA 3VTEA 2QPMA 2UUVA 2WDWA 4O95A 4BC9A 1VAOA 2R8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6G A;  2BVF A;  4PZF A;  3RJA A;  3W8Z A;  3FW9 A;  4PWB A;  3POP A;  5K8E A;  3D2D A;  3GSY A;  4PVE A;  4DNS A;  4PVH A;  3D2J A;  2Y08 A;  3FW8 A;  4PWC A;  3HSU A;  2BVH A;  2UUU A;  3FWA A;  4UD8 A;  3PQB A;  5I1V A;  2Y4G A;  2IPI A;  3RJ8 A;  5D79 A;  5I1W A;  2Y3R A;  2AXR A;  3TSH A;  3TSJ A;  5L6F A;  3D2H A;  2BVG A;  5AWV A;  4PVJ A;  3FW7 A;  3W8X A;  2Y3S A;  3W8W A;  4XLO A;  3VTE A;  2UUV A;  1ZR6 A;  2WDW A;  4EC3 A;  4PVK A; 
#chains in the Genus database with same CATH topology
 1UXY A;  2BVF A;  1WVE A;  3W8Z A;  5HHZ A;  1WYG A;  1N61 C;  3I99 A;  1QLU A;  3LAE A;  3NS1 B;  3NRZ B;  4PVH A;  3D2J A;  3AM9 A;  3S1D A;  3AN1 A;  2VFS A;  1E0Y A;  2R2Z A;  3FWA A;  1T3Q C;  3TX1 A;  2NQW A;  3RJ8 A;  2P3H A;  3LLB A;  3SR6 B;  5I1W A;  2Y3R A;  3TSH A;  3NVY B;  1FFU C;  3C0P A;  1N63 C;  3FW7 A;  1N60 C;  2P13 A;  1W1J A;  3W8X A;  5AE3 A;  2PLS A;  1QLT A;  2E3T A;  1MBB A;  2RK5 A;  3NVV B;  5FXP A;  4BC7 A;  3DED A;  1E8H A;  5K8E A;  5AE1 A;  4ZOH B;  1W1O A;  2P4P A;  1DII A;  3GSY A;  2BVH A;  3DQ0 A;  1FO4 A;  2O3G A;  3EUB 3;  2GQT A;  3NVZ B;  4BCA A;  1N5X A;  5G5G B;  3BW7 A;  3PM9 A;  2AXR A;  5AE2 A;  5L6F A;  5HQX A;  2BVG A;  4OAL A;  1W1S A;  5ADZ A;  2Q85 A;  3S1C A;  2MBR A;  1SB3 B;  1ZXI C;  4XLO A;  1ZR6 A;  4PVK A;  5FXE A;  4PZF A;  3RJA A;  5G5H B;  3JS8 A;  4BBY A;  1RM6 B;  2VFV A;  3FW9 A;  3POP A;  4PYT A;  3B9J B;  5FXD A;  2VFT A;  1W1R A;  2W55 A;  2Y08 A;  1W1K A;  2YVS A;  3FW8 A;  3HSU A;  4PWC A;  3S1F A;  1HSK A;  2GQU A;  4UD8 A;  3PQB A;  2Q4W A;  1DZN A;  3AMZ A;  1MBT A;  2W54 A;  1W1L A;  1JRO A;  2I0K A;  3NVW B;  1AHU A;  4PVJ A;  5AWV A;  5HMR A;  3ETR B;  2W3S A;  1I19 A;  1AHV A;  1E8F A;  4EC3 A;  5L6G A;  2PLI A;  4JAY A;  2OAI A;  1DIQ A;  1WVF A;  1VDV A;  4MLA A;  1F0X A;  4PWB A;  5FXF A;  2VAO A;  2QKN A;  3D2D A;  4ML8 A;  4PVE A;  4DNS A;  1W1Q A;  1V97 A;  1FIQ B;  2UUU A;  1N62 C;  3HRD C;  1FFV C;  2VFR A;  5I1V A;  2Y4G A;  2IPI A;  1AHZ A;  2W3R A;  5D79 A;  1JRP A;  2VFU A;  4HG0 A;  3TSJ A;  3S1E A;  3D2H A;  1N5W C;  3KJM A;  2EXR A;  1E8G A;  1W1M A;  2Y3S A;  4JB1 A;  3W8W A;  3VTE A;  2QPM A;  2UUV A;  2WDW A;  4O95 A;  4BC9 A;  1VAO A;  2R8D A; 
#chains in the Genus database with same CATH homology
 1UXY A;  2BVF A;  1WVE A;  3W8Z A;  5HHZ A;  1WYG A;  1N61 C;  3I99 A;  1QLU A;  3LAE A;  3NS1 B;  3NRZ B;  4PVH A;  3D2J A;  3AM9 A;  3S1D A;  3AN1 A;  2VFS A;  1E0Y A;  2R2Z A;  3FWA A;  1T3Q C;  3TX1 A;  2NQW A;  3RJ8 A;  2P3H A;  3LLB A;  3SR6 B;  5I1W A;  2Y3R A;  3TSH A;  3NVY B;  1FFU C;  3C0P A;  1N63 C;  3FW7 A;  1N60 C;  2P13 A;  1W1J A;  3W8X A;  5AE3 A;  2PLS A;  1QLT A;  2E3T A;  1MBB A;  2RK5 A;  3NVV B;  5FXP A;  4BC7 A;  3DED A;  1E8H A;  5K8E A;  5AE1 A;  4ZOH B;  1W1O A;  2P4P A;  1DII A;  3GSY A;  2BVH A;  3DQ0 A;  1FO4 A;  2O3G A;  3EUB 3;  2GQT A;  3NVZ B;  4BCA A;  1N5X A;  5G5G B;  3BW7 A;  3PM9 A;  2AXR A;  5AE2 A;  5L6F A;  5HQX A;  2BVG A;  4OAL A;  1W1S A;  5ADZ A;  2Q85 A;  3S1C A;  2MBR A;  1SB3 B;  1ZXI C;  4XLO A;  1ZR6 A;  4PVK A;  5FXE A;  4PZF A;  3RJA A;  5G5H B;  3JS8 A;  4BBY A;  1RM6 B;  2VFV A;  3FW9 A;  3POP A;  4PYT A;  3B9J B;  5FXD A;  2VFT A;  1W1R A;  2W55 A;  2Y08 A;  1W1K A;  2YVS A;  3FW8 A;  3HSU A;  4PWC A;  3S1F A;  1HSK A;  2GQU A;  4UD8 A;  3PQB A;  2Q4W A;  1DZN A;  3AMZ A;  1MBT A;  2W54 A;  1W1L A;  1JRO A;  2I0K A;  3NVW B;  1AHU A;  4PVJ A;  5AWV A;  5HMR A;  3ETR B;  2W3S A;  1I19 A;  1AHV A;  1E8F A;  4EC3 A;  5L6G A;  2PLI A;  4JAY A;  2OAI A;  1DIQ A;  1WVF A;  1VDV A;  4MLA A;  1F0X A;  4PWB A;  5FXF A;  2VAO A;  2QKN A;  3D2D A;  4ML8 A;  4PVE A;  4DNS A;  1W1Q A;  1V97 A;  1FIQ B;  2UUU A;  1N62 C;  3HRD C;  1FFV C;  2VFR A;  5I1V A;  2Y4G A;  2IPI A;  1AHZ A;  2W3R A;  5D79 A;  1JRP A;  2VFU A;  4HG0 A;  3TSJ A;  3S1E A;  3D2H A;  1N5W C;  3KJM A;  2EXR A;  1E8G A;  1W1M A;  2Y3S A;  4JB1 A;  3W8W A;  3VTE A;  2QPM A;  2UUV A;  2WDW A;  4O95 A;  4BC9 A;  1VAO A;  2R8D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...