3RJAA

Crystal structure of carbohydrate oxidase from microdochium nivale in complex with substrate analogue
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carbohydrate oxidase
publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
source organism Microdochium nivale
molecule tags Oxidoreductase
total genus 172
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rjaA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rjaA02
3RJAA 5I1VA 1ZR6A 3POPA 3D2HA 2Y3RA 4PWBA 3W8XA 3VTEA 4PVEA 5K8EA 3FW8A 4PVHA 2BVHA 2BVGA 4DNSA 2Y08A 3D2DA 2WDWA 3FW9A 5AWVA 2UUVA 2IPIA 4PWCA 3FWAA 3W8WA 3TSJA 3TSHA 3PQBA 3D2JA 2Y4GA 4PZFA 4EC3A 3W8ZA 3RJ8A 5I1WA 3FW7A 4XLOA 2UUUA 5L6FA 2AXRA 5L6GA 4PVJA 3GSYA 4UD8A 4PVKA 2BVFA 5D79A 3HSUA 2Y3SA
chains in the Genus database with same CATH superfamily
2Q85A 3RJAA 3NS1B 3D2HA 2PLSA 3AMZA 3EUB3 5G5HB 1MBBA 1SB3B 3FW8A 1I19A 4PVHA 2BVGA 4DNSA 5K8EA 5HMRA 1HSKA 1W1JA 2WDWA 4HG0A 4PWCA 1E0YA 1QLTA 3KJMA 3FWAA 4O95A 2EXRA 2VFRA 4OALA 4EC3A 1VDVA 2W3SA 1N60C 1RM6B 2YVSA 5I1WA 2UUUA 4PYTA 3LAEA 2P4PA 2QKNA 1N5WC 3GSYA 4BCAA 5FXDA 4PVKA 2GQTA 1ZXIC 5FXFA 5HHZA 1E8GA 5D79A 1AHVA 2VFVA 5I1VA 2QPMA 1W1RA 3LLBA 4PWBA 5HQXA 1JROA 1N61C 3B9JB 2MBRA 5FXPA 1N62C 2BVHA 1MBTA 2W3RA 1W1LA 1FFVC 4JAYA 3D2DA 3AM9A 1VAOA 1WVEA 1N5XA 2UUVA 5AE1A 3W8WA 3NRZB 3TSJA 1DIQA 3PQBA 4PZFA 3W8ZA 2P3HA 3S1CA 1JRPA 3RJ8A 3PM9A 2Q4WA 4XLOA 3ETRB 3S1FA 4UD8A 5FXEA 1W1OA 2O3GA 2VFTA 2NQWA 3HSUA 2Y3SA 5G5GB 3DQ0A 4MLAA 3S1DA 1W1QA 1WVFA 3POPA 2VFSA 3NVVB 4JB1A 3BW7A 2Y08A 2GQUA 3TX1A 3JS8A 1F0XA 3AN1A 1DZNA 5ADZA 1AHUA 1FFUC 1W1MA 3D2JA 3TSHA 1V97A 2Y4GA 4ML8A 3NVZB 3DEDA 4ZOHB 3FW7A 5L6FA 5AE2A 3SR6B 1DIIA 4PVJA 1N63C 2OAIA 2RK5A 4BC7A 5L6GA 1W1SA 2BVFA 1W1KA 3HRDC 3C0PA 1WYGA 2E3TA 1ZR6A 4BBYA 2Y3RA 3W8XA 2VAOA 3S1EA 3VTEA 4PVEA 1T3QC 2PLIA 3FW9A 5AWVA 1AHZA 2IPIA 4BC9A 1E8HA 2R2ZA 2P13A 1FO4A 2VFUA 3NVYB 1QLUA 3NVWB 2AXRA 2I0KA 1FIQB 5AE3A 1UXYA 2W55A 2R8DA 1E8FA 2W54A 3I99A
chains in the Genus database with same CATH topology
2Q85A 3RJAA 3NS1B 3D2HA 2PLSA 3AMZA 3EUB3 5G5HB 1MBBA 1SB3B 3FW8A 1I19A 4PVHA 2BVGA 4DNSA 5K8EA 5HMRA 1HSKA 1W1JA 2WDWA 4HG0A 4PWCA 1E0YA 1QLTA 3KJMA 3FWAA 4O95A 2EXRA 2VFRA 4OALA 4EC3A 1VDVA 2W3SA 1N60C 1RM6B 2YVSA 5I1WA 2UUUA 4PYTA 3LAEA 2P4PA 2QKNA 1N5WC 3GSYA 4BCAA 5FXDA 4PVKA 2GQTA 1ZXIC 5FXFA 5HHZA 1E8GA 5D79A 1AHVA 2VFVA 5I1VA 2QPMA 1W1RA 3LLBA 4PWBA 5HQXA 1JROA 1N61C 3B9JB 2MBRA 5FXPA 1N62C 2BVHA 1MBTA 2W3RA 1W1LA 1FFVC 4JAYA 3D2DA 3AM9A 1VAOA 1WVEA 1N5XA 2UUVA 5AE1A 3W8WA 3NRZB 3TSJA 1DIQA 3PQBA 4PZFA 3W8ZA 2P3HA 3S1CA 1JRPA 3RJ8A 3PM9A 2Q4WA 4XLOA 3ETRB 3S1FA 4UD8A 5FXEA 1W1OA 2O3GA 2VFTA 2NQWA 3HSUA 2Y3SA 5G5GB 3DQ0A 4MLAA 3S1DA 1W1QA 1WVFA 3POPA 2VFSA 3NVVB 4JB1A 3BW7A 2Y08A 2GQUA 3TX1A 3JS8A 1F0XA 3AN1A 1DZNA 5ADZA 1AHUA 1FFUC 1W1MA 3D2JA 3TSHA 1V97A 2Y4GA 4ML8A 3NVZB 3DEDA 4ZOHB 3FW7A 5L6FA 5AE2A 3SR6B 1DIIA 4PVJA 1N63C 2OAIA 2RK5A 4BC7A 5L6GA 1W1SA 2BVFA 1W1KA 3HRDC 3C0PA 1WYGA 2E3TA 1ZR6A 4BBYA 2Y3RA 3W8XA 2VAOA 3S1EA 3VTEA 4PVEA 1T3QC 2PLIA 3FW9A 5AWVA 1AHZA 2IPIA 4BC9A 1E8HA 2R2ZA 2P13A 1FO4A 2VFUA 3NVYB 1QLUA 3NVWB 2AXRA 2I0KA 1FIQB 5AE3A 1UXYA 2W55A 2R8DA 1E8FA 2W54A 3I99A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJA A;  5I1V A;  1ZR6 A;  3POP A;  3D2H A;  2Y3R A;  4PWB A;  3W8X A;  3VTE A;  4PVE A;  5K8E A;  3FW8 A;  4PVH A;  2BVH A;  2BVG A;  4DNS A;  2Y08 A;  3D2D A;  2WDW A;  3FW9 A;  5AWV A;  2UUV A;  2IPI A;  4PWC A;  3FWA A;  3W8W A;  3TSJ A;  3TSH A;  3PQB A;  3D2J A;  2Y4G A;  4PZF A;  4EC3 A;  3W8Z A;  3RJ8 A;  5I1W A;  3FW7 A;  4XLO A;  2UUU A;  5L6F A;  2AXR A;  5L6G A;  4PVJ A;  3GSY A;  4UD8 A;  4PVK A;  2BVF A;  5D79 A;  3HSU A;  2Y3S A; 
#chains in the Genus database with same CATH topology
 2Q85 A;  3RJA A;  3NS1 B;  3D2H A;  2PLS A;  3AMZ A;  3EUB 3;  5G5H B;  1MBB A;  1SB3 B;  3FW8 A;  1I19 A;  4PVH A;  2BVG A;  4DNS A;  5K8E A;  5HMR A;  1HSK A;  1W1J A;  2WDW A;  4HG0 A;  4PWC A;  1E0Y A;  1QLT A;  3KJM A;  3FWA A;  4O95 A;  2EXR A;  2VFR A;  4OAL A;  4EC3 A;  1VDV A;  2W3S A;  1N60 C;  1RM6 B;  2YVS A;  5I1W A;  2UUU A;  4PYT A;  3LAE A;  2P4P A;  2QKN A;  1N5W C;  3GSY A;  4BCA A;  5FXD A;  4PVK A;  2GQT A;  1ZXI C;  5FXF A;  5HHZ A;  1E8G A;  5D79 A;  1AHV A;  2VFV A;  5I1V A;  2QPM A;  1W1R A;  3LLB A;  4PWB A;  5HQX A;  1JRO A;  1N61 C;  3B9J B;  2MBR A;  5FXP A;  1N62 C;  2BVH A;  1MBT A;  2W3R A;  1W1L A;  1FFV C;  4JAY A;  3D2D A;  3AM9 A;  1VAO A;  1WVE A;  1N5X A;  2UUV A;  5AE1 A;  3W8W A;  3NRZ B;  3TSJ A;  1DIQ A;  3PQB A;  4PZF A;  3W8Z A;  2P3H A;  3S1C A;  1JRP A;  3RJ8 A;  3PM9 A;  2Q4W A;  4XLO A;  3ETR B;  3S1F A;  4UD8 A;  5FXE A;  1W1O A;  2O3G A;  2VFT A;  2NQW A;  3HSU A;  2Y3S A;  5G5G B;  3DQ0 A;  4MLA A;  3S1D A;  1W1Q A;  1WVF A;  3POP A;  2VFS A;  3NVV B;  4JB1 A;  3BW7 A;  2Y08 A;  2GQU A;  3TX1 A;  3JS8 A;  1F0X A;  3AN1 A;  1DZN A;  5ADZ A;  1AHU A;  1FFU C;  1W1M A;  3D2J A;  3TSH A;  1V97 A;  2Y4G A;  4ML8 A;  3NVZ B;  3DED A;  4ZOH B;  3FW7 A;  5L6F A;  5AE2 A;  3SR6 B;  1DII A;  4PVJ A;  1N63 C;  2OAI A;  2RK5 A;  4BC7 A;  5L6G A;  1W1S A;  2BVF A;  1W1K A;  3HRD C;  3C0P A;  1WYG A;  2E3T A;  1ZR6 A;  4BBY A;  2Y3R A;  3W8X A;  2VAO A;  3S1E A;  3VTE A;  4PVE A;  1T3Q C;  2PLI A;  3FW9 A;  5AWV A;  1AHZ A;  2IPI A;  4BC9 A;  1E8H A;  2R2Z A;  2P13 A;  1FO4 A;  2VFU A;  3NVY B;  1QLU A;  3NVW B;  2AXR A;  2I0K A;  1FIQ B;  5AE3 A;  1UXY A;  2W55 A;  2R8D A;  1E8F A;  2W54 A;  3I99 A; 
#chains in the Genus database with same CATH homology
 2Q85 A;  3RJA A;  3NS1 B;  3D2H A;  2PLS A;  3AMZ A;  3EUB 3;  5G5H B;  1MBB A;  1SB3 B;  3FW8 A;  1I19 A;  4PVH A;  2BVG A;  4DNS A;  5K8E A;  5HMR A;  1HSK A;  1W1J A;  2WDW A;  4HG0 A;  4PWC A;  1E0Y A;  1QLT A;  3KJM A;  3FWA A;  4O95 A;  2EXR A;  2VFR A;  4OAL A;  4EC3 A;  1VDV A;  2W3S A;  1N60 C;  1RM6 B;  2YVS A;  5I1W A;  2UUU A;  4PYT A;  3LAE A;  2P4P A;  2QKN A;  1N5W C;  3GSY A;  4BCA A;  5FXD A;  4PVK A;  2GQT A;  1ZXI C;  5FXF A;  5HHZ A;  1E8G A;  5D79 A;  1AHV A;  2VFV A;  5I1V A;  2QPM A;  1W1R A;  3LLB A;  4PWB A;  5HQX A;  1JRO A;  1N61 C;  3B9J B;  2MBR A;  5FXP A;  1N62 C;  2BVH A;  1MBT A;  2W3R A;  1W1L A;  1FFV C;  4JAY A;  3D2D A;  3AM9 A;  1VAO A;  1WVE A;  1N5X A;  2UUV A;  5AE1 A;  3W8W A;  3NRZ B;  3TSJ A;  1DIQ A;  3PQB A;  4PZF A;  3W8Z A;  2P3H A;  3S1C A;  1JRP A;  3RJ8 A;  3PM9 A;  2Q4W A;  4XLO A;  3ETR B;  3S1F A;  4UD8 A;  5FXE A;  1W1O A;  2O3G A;  2VFT A;  2NQW A;  3HSU A;  2Y3S A;  5G5G B;  3DQ0 A;  4MLA A;  3S1D A;  1W1Q A;  1WVF A;  3POP A;  2VFS A;  3NVV B;  4JB1 A;  3BW7 A;  2Y08 A;  2GQU A;  3TX1 A;  3JS8 A;  1F0X A;  3AN1 A;  1DZN A;  5ADZ A;  1AHU A;  1FFU C;  1W1M A;  3D2J A;  3TSH A;  1V97 A;  2Y4G A;  4ML8 A;  3NVZ B;  3DED A;  4ZOH B;  3FW7 A;  5L6F A;  5AE2 A;  3SR6 B;  1DII A;  4PVJ A;  1N63 C;  2OAI A;  2RK5 A;  4BC7 A;  5L6G A;  1W1S A;  2BVF A;  1W1K A;  3HRD C;  3C0P A;  1WYG A;  2E3T A;  1ZR6 A;  4BBY A;  2Y3R A;  3W8X A;  2VAO A;  3S1E A;  3VTE A;  4PVE A;  1T3Q C;  2PLI A;  3FW9 A;  5AWV A;  1AHZ A;  2IPI A;  4BC9 A;  1E8H A;  2R2Z A;  2P13 A;  1FO4 A;  2VFU A;  3NVY B;  1QLU A;  3NVW B;  2AXR A;  2I0K A;  1FIQ B;  5AE3 A;  1UXY A;  2W55 A;  2R8D A;  1E8F A;  2W54 A;  3I99 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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