3RJAA

Crystal structure of carbohydrate oxidase from microdochium nivale in complex with substrate analogue
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
source organism Microdochium nivale
molecule tags Oxidoreductase
molecule keywords Carbohydrate oxidase
total genus 172
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rjaA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rjaA02
2UUUA 2BVGA 2UUVA 3POPA 4PVHA 2Y4GA 3D2HA 3W8XA 3PQBA 4PVEA 2IPIA 3FW9A 3FW7A 3VTEA 4PVKA 3FWAA 5I1WA 4PWBA 2Y3SA 2BVFA 2BVHA 3TSJA 3RJAA 5I1VA 4EC3A 4PVJA 4PZFA 2Y08A 5AWVA 4DNSA 2WDWA 3RJ8A 4XLOA 1ZR6A 5L6FA 3GSYA 3D2DA 3HSUA 4PWCA 3FW8A 5D79A 3D2JA 5K8EA 3TSHA 2AXRA 3W8ZA 4UD8A 2Y3RA 5L6GA 3W8WA
chains in the Genus database with same CATH superfamily
2UUUA 4PVHA 2W3RA 1FO4A 1ZXIC 1QLUA 2EXRA 4ZOHB 2P4PA 2IPIA 2GQTA 2VFUA 2MBRA 3I99A 1RM6B 3B9JB 2Y3SA 1QLTA 3RJAA 4BC9A 1FFVC 2VFVA 5I1VA 2YVSA 2VFRA 3NS1B 1HSKA 4DNSA 2Q4WA 5FXPA 5G5HB 1FFUC 3BW7A 1W1LA 3LLBA 1FIQB 1W1KA 4HG0A 1W1OA 5AE2A 4OALA 1VDVA 2O3GA 3TSHA 1V97A 1MBTA 3TX1A 1W1SA 1N62C 3D2HA 3W8XA 1MBBA 2GQUA 3FW7A 1E8HA 3VTEA 3FWAA 2BVHA 2PLIA 1E8FA 1JROA 5AE3A 4PVJA 2Y08A 1AHZA 3HRDC 3LAEA 1ZR6A 5L6FA 2VFSA 1N63C 1W1QA 2W54A 3D2DA 3S1FA 3DQ0A 3FW8A 5D79A 1W1RA 3D2JA 1WVEA 2NQWA 3NVZB 1DIQA 1VAOA 3ETRB 2R8DA 5L6GA 2Q85A 2QKNA 2VFTA 2UUVA 1SB3B 1N61C 2VAOA 3POPA 4JB1A 3PQBA 4PVEA 3AM9A 4PVKA 1W1MA 1N60C 4PYTA 4PWBA 5I1WA 2BVFA 1DZNA 1E0YA 1E8GA 4PZFA 2P13A 2WDWA 3NVVB 4XLOA 5FXDA 5HMRA 2PLSA 3DEDA 3GSYA 2QPMA 5HHZA 1I19A 4PWCA 3S1DA 5FXEA 3S1EA 2R2ZA 5K8EA 1AHVA 3AMZA 4BCAA 2AXRA 1N5WC 5G5GB 4JAYA 1UXYA 2E3TA 3W8ZA 4BBYA 5AE1A 3W8WA 2BVGA 1JRPA 2W3SA 3NVWB 2Y4GA 3PM9A 4ML8A 2OAIA 2RK5A 3FW9A 4O95A 5ADZA 3AN1A 5FXFA 2P3HA 3EUB3 3TSJA 3S1CA 3NRZB 3JS8A 2I0KA 1WYGA 4EC3A 1AHUA 3NVYB 3C0PA 5AWVA 3RJ8A 1F0XA 1W1JA 1T3QC 3HSUA 3SR6B 1WVFA 3KJMA 1DIIA 4BC7A 2W55A 1N5XA 4UD8A 2Y3RA 5HQXA 4MLAA
chains in the Genus database with same CATH topology
2UUUA 4PVHA 2W3RA 1FO4A 1ZXIC 1QLUA 2EXRA 4ZOHB 2P4PA 2IPIA 2GQTA 2VFUA 2MBRA 3I99A 1RM6B 3B9JB 2Y3SA 1QLTA 3RJAA 4BC9A 1FFVC 2VFVA 5I1VA 2YVSA 2VFRA 3NS1B 1HSKA 4DNSA 2Q4WA 5FXPA 5G5HB 1FFUC 3BW7A 1W1LA 3LLBA 1FIQB 1W1KA 4HG0A 1W1OA 5AE2A 4OALA 1VDVA 2O3GA 3TSHA 1V97A 1MBTA 3TX1A 1W1SA 1N62C 3D2HA 3W8XA 1MBBA 2GQUA 3FW7A 1E8HA 3VTEA 3FWAA 2BVHA 2PLIA 1E8FA 1JROA 5AE3A 4PVJA 2Y08A 1AHZA 3HRDC 3LAEA 1ZR6A 5L6FA 2VFSA 1N63C 1W1QA 2W54A 3D2DA 3S1FA 3DQ0A 3FW8A 5D79A 1W1RA 3D2JA 1WVEA 2NQWA 3NVZB 1DIQA 1VAOA 3ETRB 2R8DA 5L6GA 2Q85A 2QKNA 2VFTA 2UUVA 1SB3B 1N61C 2VAOA 3POPA 4JB1A 3PQBA 4PVEA 3AM9A 4PVKA 1W1MA 1N60C 4PYTA 4PWBA 5I1WA 2BVFA 1DZNA 1E0YA 1E8GA 4PZFA 2P13A 2WDWA 3NVVB 4XLOA 5FXDA 5HMRA 2PLSA 3DEDA 3GSYA 2QPMA 5HHZA 1I19A 4PWCA 3S1DA 5FXEA 3S1EA 2R2ZA 5K8EA 1AHVA 3AMZA 4BCAA 2AXRA 1N5WC 5G5GB 4JAYA 1UXYA 2E3TA 3W8ZA 4BBYA 5AE1A 3W8WA 2BVGA 1JRPA 2W3SA 3NVWB 2Y4GA 3PM9A 4ML8A 2OAIA 2RK5A 3FW9A 4O95A 5ADZA 3AN1A 5FXFA 2P3HA 3EUB3 3TSJA 3S1CA 3NRZB 3JS8A 2I0KA 1WYGA 4EC3A 1AHUA 3NVYB 3C0PA 5AWVA 3RJ8A 1F0XA 1W1JA 1T3QC 3HSUA 3SR6B 1WVFA 3KJMA 1DIIA 4BC7A 2W55A 1N5XA 4UD8A 2Y3RA 5HQXA 4MLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UUU A;  2BVG A;  2UUV A;  3POP A;  4PVH A;  2Y4G A;  3D2H A;  3W8X A;  3PQB A;  4PVE A;  2IPI A;  3FW9 A;  3FW7 A;  3VTE A;  4PVK A;  3FWA A;  5I1W A;  4PWB A;  2Y3S A;  2BVF A;  2BVH A;  3TSJ A;  3RJA A;  5I1V A;  4EC3 A;  4PVJ A;  4PZF A;  2Y08 A;  5AWV A;  4DNS A;  2WDW A;  3RJ8 A;  4XLO A;  1ZR6 A;  5L6F A;  3GSY A;  3D2D A;  3HSU A;  4PWC A;  3FW8 A;  5D79 A;  3D2J A;  5K8E A;  3TSH A;  2AXR A;  3W8Z A;  4UD8 A;  2Y3R A;  5L6G A;  3W8W A; 
#chains in the Genus database with same CATH topology
 2UUU A;  4PVH A;  2W3R A;  1FO4 A;  1ZXI C;  1QLU A;  2EXR A;  4ZOH B;  2P4P A;  2IPI A;  2GQT A;  2VFU A;  2MBR A;  3I99 A;  1RM6 B;  3B9J B;  2Y3S A;  1QLT A;  3RJA A;  4BC9 A;  1FFV C;  2VFV A;  5I1V A;  2YVS A;  2VFR A;  3NS1 B;  1HSK A;  4DNS A;  2Q4W A;  5FXP A;  5G5H B;  1FFU C;  3BW7 A;  1W1L A;  3LLB A;  1FIQ B;  1W1K A;  4HG0 A;  1W1O A;  5AE2 A;  4OAL A;  1VDV A;  2O3G A;  3TSH A;  1V97 A;  1MBT A;  3TX1 A;  1W1S A;  1N62 C;  3D2H A;  3W8X A;  1MBB A;  2GQU A;  3FW7 A;  1E8H A;  3VTE A;  3FWA A;  2BVH A;  2PLI A;  1E8F A;  1JRO A;  5AE3 A;  4PVJ A;  2Y08 A;  1AHZ A;  3HRD C;  3LAE A;  1ZR6 A;  5L6F A;  2VFS A;  1N63 C;  1W1Q A;  2W54 A;  3D2D A;  3S1F A;  3DQ0 A;  3FW8 A;  5D79 A;  1W1R A;  3D2J A;  1WVE A;  2NQW A;  3NVZ B;  1DIQ A;  1VAO A;  3ETR B;  2R8D A;  5L6G A;  2Q85 A;  2QKN A;  2VFT A;  2UUV A;  1SB3 B;  1N61 C;  2VAO A;  3POP A;  4JB1 A;  3PQB A;  4PVE A;  3AM9 A;  4PVK A;  1W1M A;  1N60 C;  4PYT A;  4PWB A;  5I1W A;  2BVF A;  1DZN A;  1E0Y A;  1E8G A;  4PZF A;  2P13 A;  2WDW A;  3NVV B;  4XLO A;  5FXD A;  5HMR A;  2PLS A;  3DED A;  3GSY A;  2QPM A;  5HHZ A;  1I19 A;  4PWC A;  3S1D A;  5FXE A;  3S1E A;  2R2Z A;  5K8E A;  1AHV A;  3AMZ A;  4BCA A;  2AXR A;  1N5W C;  5G5G B;  4JAY A;  1UXY A;  2E3T A;  3W8Z A;  4BBY A;  5AE1 A;  3W8W A;  2BVG A;  1JRP A;  2W3S A;  3NVW B;  2Y4G A;  3PM9 A;  4ML8 A;  2OAI A;  2RK5 A;  3FW9 A;  4O95 A;  5ADZ A;  3AN1 A;  5FXF A;  2P3H A;  3EUB 3;  3TSJ A;  3S1C A;  3NRZ B;  3JS8 A;  2I0K A;  1WYG A;  4EC3 A;  1AHU A;  3NVY B;  3C0P A;  5AWV A;  3RJ8 A;  1F0X A;  1W1J A;  1T3Q C;  3HSU A;  3SR6 B;  1WVF A;  3KJM A;  1DII A;  4BC7 A;  2W55 A;  1N5X A;  4UD8 A;  2Y3R A;  5HQX A;  4MLA A; 
#chains in the Genus database with same CATH homology
 2UUU A;  4PVH A;  2W3R A;  1FO4 A;  1ZXI C;  1QLU A;  2EXR A;  4ZOH B;  2P4P A;  2IPI A;  2GQT A;  2VFU A;  2MBR A;  3I99 A;  1RM6 B;  3B9J B;  2Y3S A;  1QLT A;  3RJA A;  4BC9 A;  1FFV C;  2VFV A;  5I1V A;  2YVS A;  2VFR A;  3NS1 B;  1HSK A;  4DNS A;  2Q4W A;  5FXP A;  5G5H B;  1FFU C;  3BW7 A;  1W1L A;  3LLB A;  1FIQ B;  1W1K A;  4HG0 A;  1W1O A;  5AE2 A;  4OAL A;  1VDV A;  2O3G A;  3TSH A;  1V97 A;  1MBT A;  3TX1 A;  1W1S A;  1N62 C;  3D2H A;  3W8X A;  1MBB A;  2GQU A;  3FW7 A;  1E8H A;  3VTE A;  3FWA A;  2BVH A;  2PLI A;  1E8F A;  1JRO A;  5AE3 A;  4PVJ A;  2Y08 A;  1AHZ A;  3HRD C;  3LAE A;  1ZR6 A;  5L6F A;  2VFS A;  1N63 C;  1W1Q A;  2W54 A;  3D2D A;  3S1F A;  3DQ0 A;  3FW8 A;  5D79 A;  1W1R A;  3D2J A;  1WVE A;  2NQW A;  3NVZ B;  1DIQ A;  1VAO A;  3ETR B;  2R8D A;  5L6G A;  2Q85 A;  2QKN A;  2VFT A;  2UUV A;  1SB3 B;  1N61 C;  2VAO A;  3POP A;  4JB1 A;  3PQB A;  4PVE A;  3AM9 A;  4PVK A;  1W1M A;  1N60 C;  4PYT A;  4PWB A;  5I1W A;  2BVF A;  1DZN A;  1E0Y A;  1E8G A;  4PZF A;  2P13 A;  2WDW A;  3NVV B;  4XLO A;  5FXD A;  5HMR A;  2PLS A;  3DED A;  3GSY A;  2QPM A;  5HHZ A;  1I19 A;  4PWC A;  3S1D A;  5FXE A;  3S1E A;  2R2Z A;  5K8E A;  1AHV A;  3AMZ A;  4BCA A;  2AXR A;  1N5W C;  5G5G B;  4JAY A;  1UXY A;  2E3T A;  3W8Z A;  4BBY A;  5AE1 A;  3W8W A;  2BVG A;  1JRP A;  2W3S A;  3NVW B;  2Y4G A;  3PM9 A;  4ML8 A;  2OAI A;  2RK5 A;  3FW9 A;  4O95 A;  5ADZ A;  3AN1 A;  5FXF A;  2P3H A;  3EUB 3;  3TSJ A;  3S1C A;  3NRZ B;  3JS8 A;  2I0K A;  1WYG A;  4EC3 A;  1AHU A;  3NVY B;  3C0P A;  5AWV A;  3RJ8 A;  1F0X A;  1W1J A;  1T3Q C;  3HSU A;  3SR6 B;  1WVF A;  3KJM A;  1DII A;  4BC7 A;  2W55 A;  1N5X A;  4UD8 A;  2Y3R A;  5HQX A;  4MLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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