3RJAA

Crystal structure of carbohydrate oxidase from microdochium nivale in complex with substrate analogue
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Carbohydrate oxidase
publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
source organism Microdochium nivale
total genus 172
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rjaA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rjaA02
5AWVA 3POPA 3D2DA 2UUUA 3VTEA 1ZR6A 2IPIA 2BVGA 2Y4GA 3PQBA 2AXRA 4PWBA 3TSHA 4EC3A 5L6GA 4PVJA 4PVHA 3RJ8A 4PZFA 4PVEA 3FW9A 2Y3RA 5D79A 3RJAA 2BVHA 3FW7A 4PVKA 2WDWA 5I1WA 4XLOA 2Y3SA 5L6FA 5I1VA 4PWCA 2Y08A 2BVFA 3W8WA 3TSJA 3FW8A 4UD8A 3FWAA 4DNSA 3GSYA 2UUVA 3W8ZA 5K8EA 3HSUA 3D2JA 3D2HA 3W8XA
chains in the Genus database with same CATH superfamily
5AWVA 1VAOA 4PYTA 1AHUA 5G5GB 3NVZB 1WVEA 3AN1A 3POPA 3VTEA 1ZR6A 3ETRB 1I19A 3NS1B 4EC3A 1W1MA 4BC9A 2I0KA 2VFUA 4OALA 1JRPA 2GQTA 4ZOHB 1HSKA 2OAIA 5FXPA 1QLUA 1W1KA 4XLOA 3S1CA 5L6FA 1FO4A 3SR6B 5AE2A 4BCAA 2BVFA 3C0PA 4DNSA 5HQXA 3D2HA 1RM6B 1DIIA 1AHZA 5FXEA 1FIQB 1E0YA 2IPIA 3PQBA 2QPMA 2VFRA 3TSHA 2RK5A 5L6GA 2P3HA 4PVJA 1W1RA 5HMRA 5FXDA 1W1LA 4PVEA 3FW9A 2Y3RA 2EXRA 5G5HB 3FW7A 1MBBA 3PM9A 4ML8A 5ADZA 5I1WA 1F0XA 5I1VA 1FFVC 1N61C 2Y08A 2P13A 3W8WA 3TSJA 1W1OA 2GQUA 3GSYA 2UUVA 3W8ZA 1FFUC 3DEDA 5K8EA 2W3SA 3D2JA 5FXFA 2Q85A 1N5XA 2QKNA 1WVFA 2UUUA 3D2DA 1SB3B 2AXRA 4HG0A 3S1FA 3AMZA 4PVHA 1AHVA 2R2ZA 2W54A 4JB1A 1N5WC 3S1EA 4JAYA 5HHZA 1ZXIC 2R8DA 3RJAA 3EUB3 2BVHA 3KJMA 4PVKA 2WDWA 1N63C 2Y3SA 4PWCA 1WYGA 2P4PA 1JROA 2MBRA 1E8FA 1V97A 2Q4WA 3NRZB 2VAOA 3AM9A 1E8GA 4O95A 1MBTA 3HSUA 2VFVA 2YVSA 2VFSA 3NVVB 4BC7A 3LLBA 3NVYB 5AE3A 2O3GA 1E8HA 1T3QC 3JS8A 2BVGA 2VFTA 2Y4GA 3NVWB 4PWBA 2NQWA 4PZFA 3RJ8A 4BBYA 2W3RA 3S1DA 5D79A 2PLIA 1W1QA 3B9JB 3I99A 3DQ0A 1DIQA 1N60C 1N62C 1DZNA 2W55A 1VDVA 2PLSA 1UXYA 1QLTA 2E3TA 3BW7A 1W1SA 1W1JA 4MLAA 3FW8A 4UD8A 3FWAA 3HRDC 5AE1A 3LAEA 3W8XA 3TX1A
chains in the Genus database with same CATH topology
5AWVA 1VAOA 4PYTA 1AHUA 5G5GB 3NVZB 1WVEA 3AN1A 3POPA 3VTEA 1ZR6A 3ETRB 1I19A 3NS1B 4EC3A 1W1MA 4BC9A 2I0KA 2VFUA 4OALA 1JRPA 2GQTA 4ZOHB 1HSKA 2OAIA 5FXPA 1QLUA 1W1KA 4XLOA 3S1CA 5L6FA 1FO4A 3SR6B 5AE2A 4BCAA 2BVFA 3C0PA 4DNSA 5HQXA 3D2HA 1RM6B 1DIIA 1AHZA 5FXEA 1FIQB 1E0YA 2IPIA 3PQBA 2QPMA 2VFRA 3TSHA 2RK5A 5L6GA 2P3HA 4PVJA 1W1RA 5HMRA 5FXDA 1W1LA 4PVEA 3FW9A 2Y3RA 2EXRA 5G5HB 3FW7A 1MBBA 3PM9A 4ML8A 5ADZA 5I1WA 1F0XA 5I1VA 1FFVC 1N61C 2Y08A 2P13A 3W8WA 3TSJA 1W1OA 2GQUA 3GSYA 2UUVA 3W8ZA 1FFUC 3DEDA 5K8EA 2W3SA 3D2JA 5FXFA 2Q85A 1N5XA 2QKNA 1WVFA 2UUUA 3D2DA 1SB3B 2AXRA 4HG0A 3S1FA 3AMZA 4PVHA 1AHVA 2R2ZA 2W54A 4JB1A 1N5WC 3S1EA 4JAYA 5HHZA 1ZXIC 2R8DA 3RJAA 3EUB3 2BVHA 3KJMA 4PVKA 2WDWA 1N63C 2Y3SA 4PWCA 1WYGA 2P4PA 1JROA 2MBRA 1E8FA 1V97A 2Q4WA 3NRZB 2VAOA 3AM9A 1E8GA 4O95A 1MBTA 3HSUA 2VFVA 2YVSA 2VFSA 3NVVB 4BC7A 3LLBA 3NVYB 5AE3A 2O3GA 1E8HA 1T3QC 3JS8A 2BVGA 2VFTA 2Y4GA 3NVWB 4PWBA 2NQWA 4PZFA 3RJ8A 4BBYA 2W3RA 3S1DA 5D79A 2PLIA 1W1QA 3B9JB 3I99A 3DQ0A 1DIQA 1N60C 1N62C 1DZNA 2W55A 1VDVA 2PLSA 1UXYA 1QLTA 2E3TA 3BW7A 1W1SA 1W1JA 4MLAA 3FW8A 4UD8A 3FWAA 3HRDC 5AE1A 3LAEA 3W8XA 3TX1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AWV A;  3POP A;  3D2D A;  2UUU A;  3VTE A;  1ZR6 A;  2IPI A;  2BVG A;  2Y4G A;  3PQB A;  2AXR A;  4PWB A;  3TSH A;  4EC3 A;  5L6G A;  4PVJ A;  4PVH A;  3RJ8 A;  4PZF A;  4PVE A;  3FW9 A;  2Y3R A;  5D79 A;  3RJA A;  2BVH A;  3FW7 A;  4PVK A;  2WDW A;  5I1W A;  4XLO A;  2Y3S A;  5L6F A;  5I1V A;  4PWC A;  2Y08 A;  2BVF A;  3W8W A;  3TSJ A;  3FW8 A;  4UD8 A;  3FWA A;  4DNS A;  3GSY A;  2UUV A;  3W8Z A;  5K8E A;  3HSU A;  3D2J A;  3D2H A;  3W8X A; 
#chains in the Genus database with same CATH topology
 5AWV A;  1VAO A;  4PYT A;  1AHU A;  5G5G B;  3NVZ B;  1WVE A;  3AN1 A;  3POP A;  3VTE A;  1ZR6 A;  3ETR B;  1I19 A;  3NS1 B;  4EC3 A;  1W1M A;  4BC9 A;  2I0K A;  2VFU A;  4OAL A;  1JRP A;  2GQT A;  4ZOH B;  1HSK A;  2OAI A;  5FXP A;  1QLU A;  1W1K A;  4XLO A;  3S1C A;  5L6F A;  1FO4 A;  3SR6 B;  5AE2 A;  4BCA A;  2BVF A;  3C0P A;  4DNS A;  5HQX A;  3D2H A;  1RM6 B;  1DII A;  1AHZ A;  5FXE A;  1FIQ B;  1E0Y A;  2IPI A;  3PQB A;  2QPM A;  2VFR A;  3TSH A;  2RK5 A;  5L6G A;  2P3H A;  4PVJ A;  1W1R A;  5HMR A;  5FXD A;  1W1L A;  4PVE A;  3FW9 A;  2Y3R A;  2EXR A;  5G5H B;  3FW7 A;  1MBB A;  3PM9 A;  4ML8 A;  5ADZ A;  5I1W A;  1F0X A;  5I1V A;  1FFV C;  1N61 C;  2Y08 A;  2P13 A;  3W8W A;  3TSJ A;  1W1O A;  2GQU A;  3GSY A;  2UUV A;  3W8Z A;  1FFU C;  3DED A;  5K8E A;  2W3S A;  3D2J A;  5FXF A;  2Q85 A;  1N5X A;  2QKN A;  1WVF A;  2UUU A;  3D2D A;  1SB3 B;  2AXR A;  4HG0 A;  3S1F A;  3AMZ A;  4PVH A;  1AHV A;  2R2Z A;  2W54 A;  4JB1 A;  1N5W C;  3S1E A;  4JAY A;  5HHZ A;  1ZXI C;  2R8D A;  3RJA A;  3EUB 3;  2BVH A;  3KJM A;  4PVK A;  2WDW A;  1N63 C;  2Y3S A;  4PWC A;  1WYG A;  2P4P A;  1JRO A;  2MBR A;  1E8F A;  1V97 A;  2Q4W A;  3NRZ B;  2VAO A;  3AM9 A;  1E8G A;  4O95 A;  1MBT A;  3HSU A;  2VFV A;  2YVS A;  2VFS A;  3NVV B;  4BC7 A;  3LLB A;  3NVY B;  5AE3 A;  2O3G A;  1E8H A;  1T3Q C;  3JS8 A;  2BVG A;  2VFT A;  2Y4G A;  3NVW B;  4PWB A;  2NQW A;  4PZF A;  3RJ8 A;  4BBY A;  2W3R A;  3S1D A;  5D79 A;  2PLI A;  1W1Q A;  3B9J B;  3I99 A;  3DQ0 A;  1DIQ A;  1N60 C;  1N62 C;  1DZN A;  2W55 A;  1VDV A;  2PLS A;  1UXY A;  1QLT A;  2E3T A;  3BW7 A;  1W1S A;  1W1J A;  4MLA A;  3FW8 A;  4UD8 A;  3FWA A;  3HRD C;  5AE1 A;  3LAE A;  3W8X A;  3TX1 A; 
#chains in the Genus database with same CATH homology
 5AWV A;  1VAO A;  4PYT A;  1AHU A;  5G5G B;  3NVZ B;  1WVE A;  3AN1 A;  3POP A;  3VTE A;  1ZR6 A;  3ETR B;  1I19 A;  3NS1 B;  4EC3 A;  1W1M A;  4BC9 A;  2I0K A;  2VFU A;  4OAL A;  1JRP A;  2GQT A;  4ZOH B;  1HSK A;  2OAI A;  5FXP A;  1QLU A;  1W1K A;  4XLO A;  3S1C A;  5L6F A;  1FO4 A;  3SR6 B;  5AE2 A;  4BCA A;  2BVF A;  3C0P A;  4DNS A;  5HQX A;  3D2H A;  1RM6 B;  1DII A;  1AHZ A;  5FXE A;  1FIQ B;  1E0Y A;  2IPI A;  3PQB A;  2QPM A;  2VFR A;  3TSH A;  2RK5 A;  5L6G A;  2P3H A;  4PVJ A;  1W1R A;  5HMR A;  5FXD A;  1W1L A;  4PVE A;  3FW9 A;  2Y3R A;  2EXR A;  5G5H B;  3FW7 A;  1MBB A;  3PM9 A;  4ML8 A;  5ADZ A;  5I1W A;  1F0X A;  5I1V A;  1FFV C;  1N61 C;  2Y08 A;  2P13 A;  3W8W A;  3TSJ A;  1W1O A;  2GQU A;  3GSY A;  2UUV A;  3W8Z A;  1FFU C;  3DED A;  5K8E A;  2W3S A;  3D2J A;  5FXF A;  2Q85 A;  1N5X A;  2QKN A;  1WVF A;  2UUU A;  3D2D A;  1SB3 B;  2AXR A;  4HG0 A;  3S1F A;  3AMZ A;  4PVH A;  1AHV A;  2R2Z A;  2W54 A;  4JB1 A;  1N5W C;  3S1E A;  4JAY A;  5HHZ A;  1ZXI C;  2R8D A;  3RJA A;  3EUB 3;  2BVH A;  3KJM A;  4PVK A;  2WDW A;  1N63 C;  2Y3S A;  4PWC A;  1WYG A;  2P4P A;  1JRO A;  2MBR A;  1E8F A;  1V97 A;  2Q4W A;  3NRZ B;  2VAO A;  3AM9 A;  1E8G A;  4O95 A;  1MBT A;  3HSU A;  2VFV A;  2YVS A;  2VFS A;  3NVV B;  4BC7 A;  3LLB A;  3NVY B;  5AE3 A;  2O3G A;  1E8H A;  1T3Q C;  3JS8 A;  2BVG A;  2VFT A;  2Y4G A;  3NVW B;  4PWB A;  2NQW A;  4PZF A;  3RJ8 A;  4BBY A;  2W3R A;  3S1D A;  5D79 A;  2PLI A;  1W1Q A;  3B9J B;  3I99 A;  3DQ0 A;  1DIQ A;  1N60 C;  1N62 C;  1DZN A;  2W55 A;  1VDV A;  2PLS A;  1UXY A;  1QLT A;  2E3T A;  3BW7 A;  1W1S A;  1W1J A;  4MLA A;  3FW8 A;  4UD8 A;  3FWA A;  3HRD C;  5AE1 A;  3LAE A;  3W8X A;  3TX1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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