The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
281
|
structure length |
275
|
Chain Sequence |
VTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGHIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
pubmed doi rcsb |
| molecule keywords |
Metallophosphoesterase MPPED2
|
| source organism |
Rattus norvegicus
|
| molecule tags |
Hydrolase
|
| total genus |
91
|
| structure length |
275
|
| sequence length |
281
|
| ec nomenclature |
ec
3.1.-.-: |
| pdb deposition date | 2011-04-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00149 | Metallophos | Calcineurin-like phosphoesterase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase; chain A, domain 2 | Purple Acid Phosphatase; chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 2QFP A; 2QFR A; 2Z1A A; 3H66 A; 2NPP C; 4LU9 A; 2GJU A; 4UT3 B; 3IVD A; 4H1Y P; 1V73 A; 1WAO 1; 3AV0 A; 3THO B; 3QFM A; 5JPF A; 4H2F A; 3E7A A; 4XPN A; 1KBP A; 3LL8 A; 4YKE A; 4V0V A; 4KKZ A; 3K7W C; 4DSY A; 2IAE C; 1S3N A; 4DHL A; 4J6O A; 1MF8 A; 3PSN A; 2WDD A; 4B2O A; 1G5B A; 4H2G A; 2BQ8 X; 1S95 A; 4NZV A; 4V0X A; 1IT6 A; 4G9J A; 3KBP A; 4KBP A; 2XMO A; 1FJM A; 4UWQ A; 3QG5 C; 4JA7 A; 2R17 A; 1OID A; 2CV9 A; 4MP0 A; 4O43 A; 3N5U A; 4MOV A; 1W24 A; 2USH A; 2P6B A; 4ORA A; 1Z2X A; 1JK7 A; 1UTE A; 3THN A; 1Z2W A; 2O8A A; 3EGG A; 4ZX2 A; 5DNY A; 2YVT A; 3P71 C; 5HPE A; 3QFO A; 5B8I A; 2IE4 C; 3DSD A; 3ZU0 A; 1S3M A; 1UF3 A; 3FGA C; 4WWL A; 4HD0 A; 3AUZ A; 1TCO A; 4M0V A; 1QHW A; 1WAR A; 3QFN A; 3RL4 A; 1S8E A; 1USH A; 4H2I A; 4H2B A; 3RL5 A; 4TUI A; 5C1V A; 4O4K A; 1XZW A; 4JA9 A; 2IE3 C; 5IOH A; 5JPE A; 4FBQ A; 1SU1 A; 1HO5 A; 1HPU A; 3ICF A; 1T70 A; 4IYP C; 1M63 A; 3PSO A; 1U32 A; 2HYP A; 4FBW A; 2KKN A; 2NXF A; 4ZVZ A; 3H60 A; 4Q7F A; 2QJC A; 3H69 A; 5INB A; 2NYM C; 3H62 B; 3GVE A; 1XM7 A; 4LAC C; 2WDE A; 4UT3 A; 1T71 A; 2HYO A; 1II7 A; 3TGH A; 1QFC A; 3QFK A; 1OIE A; 1S3L A; 4DT2 A; 4O24 A; 2Z06 A; 2Q8U A; 3E7B A; 4ORB A; 2DFJ A; 3T1I A; 2HY1 A; 3DW8 C; 1OI8 A; 3V4Y A; 4I5N C; 3ZTV A; 3IB8 A; 3H68 A; 4UT2 A; 5EQV A; 1NNW A; 5JJT A; 4I5L C; 3IB7 A; 2O8G A; 4H1S A; 5J28 A; 4IL1 A; 3HVQ A; 4O5G A; 3DSC A; 2A22 A; 4MOY A; 3RL3 A; 2JOG A; 3CK2 A; 2NYL C; 1S70 A; 2BCD A; 3H64 A; 3C9F A; 3IVE A; 2Z72 A; 4V0W A; 1AUI A; 5F3W A; 4TUG A; 4ORC A; 5GTU A; 4F0Z A; 4FBK A; 2ZBM A; 3EGH A; 4FCX A; 2BDX A; 1HP1 A; 2WDC A; 3H63 A; 3RQZ A; 3C5W C; 3K7V C; 2AHD A; 4LTY A; 3H61 A; 3H67 A; 4OR9 A; 3JYF A; 2WDF A; #chains in the Genus database with same CATH topology 2QFP A; 2QFR A; 2Z1A A; 3H66 A; 2NPP C; 4LU9 A; 2GJU A; 4UT3 B; 3IVD A; 4H1Y P; 1V73 A; 1WAO 1; 3AV0 A; 3THO B; 3QFM A; 5JPF A; 4H2F A; 3E7A A; 4XPN A; 1KBP A; 3LL8 A; 4YKE A; 4V0V A; 4KKZ A; 3K7W C; 4DSY A; 2IAE C; 1S3N A; 4DHL A; 4J6O A; 1MF8 A; 3PSN A; 2WDD A; 4B2O A; 1G5B A; 4H2G A; 2BQ8 X; 1S95 A; 4NZV A; 4V0X A; 1IT6 A; 4G9J A; 3KBP A; 4KBP A; 2XMO A; 1FJM A; 4UWQ A; 3QG5 C; 4JA7 A; 2R17 A; 1OID A; 2CV9 A; 4MP0 A; 4O43 A; 3N5U A; 4MOV A; 1W24 A; 2USH A; 2P6B A; 4ORA A; 1Z2X A; 1JK7 A; 2YEQ A; 1UTE A; 3THN A; 1Z2W A; 2O8A A; 3EGG A; 4ZX2 A; 5DNY A; 2YVT A; 3P71 C; 5HPE A; 3QFO A; 5B8I A; 2IE4 C; 3DSD A; 3ZU0 A; 1S3M A; 1UF3 A; 3FGA C; 4WWL A; 4HD0 A; 3AUZ A; 2DXN A; 1TCO A; 4M0V A; 1QHW A; 1WAR A; 3QFN A; 3RL4 A; 1S8E A; 1USH A; 4H2I A; 4H2B A; 3RL5 A; 4TUI A; 5C1V A; 4O4K A; 1XZW A; 2DXL A; 3FLO A; 2IE3 C; 4JA9 A; 3E0J A; 5IOH A; 5JPE A; 4FBQ A; 1SU1 A; 1HO5 A; 1HPU A; 3ICF A; 1T70 A; 4IYP C; 1M63 A; 3PSO A; 1U32 A; 2HYP A; 4FBW A; 2KKN A; 2NXF A; 4ZVZ A; 3H60 A; 4Q7F A; 2QJC A; 3H69 A; 5INB A; 2NYM C; 3H62 B; 3GVE A; 1XM7 A; 4LAC C; 2WDE A; 4UT3 A; 1T71 A; 2HYO A; 1II7 A; 3TGH A; 1QFC A; 3QFK A; 2ZO9 B; 1OIE A; 1S3L A; 4DT2 A; 4O24 A; 2Z06 A; 2Q8U A; 3E7B A; 4ORB A; 2DFJ A; 3T1I A; 2HY1 A; 3DW8 C; 1OI8 A; 3V4Y A; 4I5N C; 2ZOA A; 3ZTV A; 3IB8 A; 3H68 A; 4UT2 A; 5EQV A; 1NNW A; 3D03 A; 5JJT A; 4I5L C; 3IB7 A; 2O8G A; 4H1S A; 5J28 A; 4IL1 A; 3HVQ A; 4O5G A; 3DSC A; 2A22 A; 4MOY A; 3RL3 A; 2JOG A; 3CK2 A; 2NYL C; 1S70 A; 2BCD A; 3H64 A; 3C9F A; 3IVE A; 2Z72 A; 4V0W A; 1AUI A; 5F3W A; 4TUG A; 4ORC A; 5GTU A; 4F0Z A; 4FBK A; 2ZBM A; 3EGH A; 4FCX A; 2BDX A; 1HP1 A; 2WDC A; 3H63 A; 3RQZ A; 3C5W C; 3K7V C; 2AHD A; 4LTY A; 3H61 A; 3H67 A; 4OR9 A; 3JYF A; 2WDF A; #chains in the Genus database with same CATH homology 2QFP A; 2QFR A; 2Z1A A; 3H66 A; 2NPP C; 4LU9 A; 2GJU A; 4UT3 B; 3IVD A; 4H1Y P; 1V73 A; 1WAO 1; 3AV0 A; 3THO B; 3QFM A; 5JPF A; 4H2F A; 3E7A A; 4XPN A; 1KBP A; 3LL8 A; 4YKE A; 4V0V A; 4KKZ A; 3K7W C; 4DSY A; 2IAE C; 1S3N A; 4DHL A; 4J6O A; 1MF8 A; 3PSN A; 2WDD A; 4B2O A; 1G5B A; 4H2G A; 2BQ8 X; 1S95 A; 4NZV A; 4V0X A; 1IT6 A; 4G9J A; 3KBP A; 4KBP A; 2XMO A; 1FJM A; 4UWQ A; 3QG5 C; 4JA7 A; 2R17 A; 1OID A; 2CV9 A; 4MP0 A; 4O43 A; 3N5U A; 4MOV A; 1W24 A; 2USH A; 2P6B A; 4ORA A; 1Z2X A; 1JK7 A; 2YEQ A; 1UTE A; 3THN A; 1Z2W A; 2O8A A; 3EGG A; 4ZX2 A; 5DNY A; 2YVT A; 3P71 C; 5HPE A; 3QFO A; 5B8I A; 2IE4 C; 3DSD A; 3ZU0 A; 1S3M A; 1UF3 A; 3FGA C; 4WWL A; 4HD0 A; 3AUZ A; 2DXN A; 1TCO A; 4M0V A; 1QHW A; 1WAR A; 3QFN A; 3RL4 A; 1S8E A; 1USH A; 4H2I A; 4H2B A; 3RL5 A; 4TUI A; 5C1V A; 4O4K A; 1XZW A; 2DXL A; 3FLO A; 2IE3 C; 4JA9 A; 3E0J A; 5IOH A; 5JPE A; 4FBQ A; 1SU1 A; 1HO5 A; 1HPU A; 3ICF A; 1T70 A; 4IYP C; 1M63 A; 3PSO A; 1U32 A; 2HYP A; 4FBW A; 2KKN A; 2NXF A; 4ZVZ A; 3H60 A; 4Q7F A; 2QJC A; 3H69 A; 5INB A; 2NYM C; 3H62 B; 3GVE A; 1XM7 A; 4LAC C; 2WDE A; 4UT3 A; 1T71 A; 2HYO A; 1II7 A; 3TGH A; 1QFC A; 3QFK A; 2ZO9 B; 1OIE A; 1S3L A; 4DT2 A; 4O24 A; 2Z06 A; 2Q8U A; 3E7B A; 4ORB A; 2DFJ A; 3T1I A; 2HY1 A; 3DW8 C; 1OI8 A; 3V4Y A; 4I5N C; 2ZOA A; 3ZTV A; 3IB8 A; 3H68 A; 4UT2 A; 5EQV A; 1NNW A; 3D03 A; 5JJT A; 4I5L C; 3IB7 A; 2O8G A; 4H1S A; 5J28 A; 4IL1 A; 3HVQ A; 4O5G A; 3DSC A; 2A22 A; 4MOY A; 3RL3 A; 2JOG A; 3CK2 A; 2NYL C; 1S70 A; 2BCD A; 3H64 A; 3C9F A; 3IVE A; 2Z72 A; 4V0W A; 1AUI A; 5F3W A; 4TUG A; 4ORC A; 5GTU A; 4F0Z A; 4FBK A; 2ZBM A; 3EGH A; 4FCX A; 2BDX A; 1HP1 A; 2WDC A; 3H63 A; 3RQZ A; 3C5W C; 3K7V C; 2AHD A; 4LTY A; 3H61 A; 3H67 A; 4OR9 A; 3JYF A; 2WDF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
