3RL5A

Rat metallophosphodiesterase mpped2 h67r mutant
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
281
structure length
279
Chain Sequence
VTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTRSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Rattus norvegicus
publication title Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
pubmed doi rcsb
molecule keywords Metallophosphoesterase MPPED2
total genus 91
structure length 279
sequence length 281
ec nomenclature ec 3.1.-.-:
pdb deposition date 2011-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3rl5A00
2Z72A 2P6BA 3IVEA 4O43A 4DSYA 3H66A 1QFCA 4Q7FA 3H67A 1UF3A 2IAEC 4J6OA 4WWLA 4M0VA 1QHWA 4UT2A 4NZVA 2JOGA 1S95A 2CV9A 3EGHA 3DSDA 2Z06A 3AUZA 1FJMA 1T70A 1HPUA 1T71A 2NYLC 4FBQA 3C9FA 4H2IA 5F3WA 4UT3B 1S3MA 2WDDA 5IOHA 1S3LA 2IE4C 2GJUA 3IB8A 4XPNA 5JJTA 2QJCA 1M63A 2ZBMA 2O8GA 4G9JA 3JYFA 3ZU0A 4I5NC 4FCXA 5DNYA 4YKEA 3H68A 4FBKA 1MF8A 1Z2XA 3EGGA 2QFPA 2HYOA 3E7AA 2USHA 2HYPA 1XM7A 1W24A 3TGHA 1S8EA 4H1YP 2XMOA 3QFMA 4LU9A 1WAO1 1IT6A 3DW8C 2WDCA 3N5UA 4FBWA 1S3NA 2Z1AA 5C1VA 3HVQA 3FGAC 4OR9A 2BDXA 3THNA 1OI8A 3CK2A 3QFOA 3V4YA 1S70A 3QG5C 3RL4A 3ICFA 4DT2A 2AHDA 1USHA 4O5GA 5JPEA 1AUIA 3E7BA 5JPFA 4UWQA 4H2BA 1SU1A 2NXFA 4I5LC 4O4KA 1WARA 4V0XA 4DHLA 1NNWA 1TCOA 1U32A 1OIEA 3PSNA 3AV0A 3H69A 3H62B 4TUIA 2QFRA 4V0WA 1XZWA 2KKNA 2WDEA 3H60A 4ORAA 4KKZA 1II7A 4MP0A 2YVTA 5J28A 2BQ8X 4ZVZA 2BCDA 3H61A 4KBPA 3RL5A 2HY1A 4O24A 3GVEA 4MOYA 1V73A 2NPPC 4MOVA 4ORCA 5GTUA 3THOB 3H63A 4ZX2A 5HPEA 4HD0A 4H1SA 2R17A 4H2GA 3P71C 1UTEA 4V0VA 3H64A 3K7VC 5B8IA 3IVDA 4LTYA 4JA7A 2WDFA 3IB7A 5INBA 1JK7A 2Q8UA 1KBPA 3KBPA 4H2FA 4IL1A 1G5BA 1OIDA 4LACC 2O8AA 3QFNA 2DFJA 1Z2WA 3RQZA 2IE3C 3RL3A 2A22A 2NYMC 4IYPC 4B2OA 3LL8A 3ZTVA 3T1IA 3DSCA 4UT3A 4JA9A 1HP1A 3C5WC 4TUGA 5EQVA 1HO5A 3QFKA 3PSOA 3K7WC 4ORBA 4F0ZA
chains in the Genus database with same CATH superfamily
2Z72A 2P6BA 3IVEA 4O43A 4DSYA 3H66A 1QFCA 4Q7FA 3H67A 1UF3A 2IAEC 4J6OA 4WWLA 4M0VA 1QHWA 4UT2A 4NZVA 2JOGA 1S95A 2CV9A 3EGHA 3DSDA 2Z06A 3AUZA 1FJMA 1T70A 1HPUA 1T71A 2NYLC 4FBQA 3C9FA 4H2IA 5F3WA 4UT3B 1S3MA 2WDDA 5IOHA 1S3LA 2IE4C 2GJUA 2YEQA 3IB8A 4XPNA 5JJTA 2QJCA 1M63A 2ZBMA 2O8GA 4G9JA 3JYFA 3ZU0A 4I5NC 4FCXA 5DNYA 4YKEA 3H68A 4FBKA 1MF8A 1Z2XA 3EGGA 2QFPA 2HYOA 3E7AA 2USHA 2HYPA 1XM7A 1W24A 3TGHA 1S8EA 4H1YP 2XMOA 3QFMA 4LU9A 2DXNA 1WAO1 1IT6A 3DW8C 2WDCA 3N5UA 4FBWA 1S3NA 2Z1AA 3FLOA 5C1VA 3HVQA 3FGAC 4OR9A 2BDXA 3THNA 1OI8A 3CK2A 3QFOA 3V4YA 1S70A 3QG5C 3RL4A 3ICFA 4DT2A 2AHDA 1USHA 4O5GA 5JPEA 1AUIA 3E7BA 5JPFA 4UWQA 4H2BA 1SU1A 2NXFA 4I5LC 4O4KA 1WARA 4V0XA 4DHLA 1NNWA 1TCOA 1U32A 1OIEA 3PSNA 3AV0A 3H69A 3H62B 4TUIA 2QFRA 4V0WA 1XZWA 2KKNA 2WDEA 3H60A 4ORAA 4KKZA 1II7A 4MP0A 2YVTA 5J28A 2ZOAA 2BQ8X 3D03A 2BCDA 4ZVZA 3H61A 4KBPA 3RL5A 2HY1A 4O24A 3GVEA 4MOYA 1V73A 2NPPC 4MOVA 4ORCA 5GTUA 3THOB 3H63A 4ZX2A 2ZO9B 5HPEA 4HD0A 3E0JA 4H1SA 2R17A 4H2GA 3P71C 1UTEA 4V0VA 3H64A 3K7VC 5B8IA 3IVDA 4LTYA 4JA7A 2WDFA 3IB7A 5INBA 1JK7A 2Q8UA 1KBPA 3KBPA 4H2FA 4IL1A 1G5BA 1OIDA 4LACC 2O8AA 3QFNA 2DFJA 2DXLA 1Z2WA 3RQZA 2IE3C 3RL3A 2A22A 2NYMC 4IYPC 4B2OA 3LL8A 3ZTVA 3T1IA 3DSCA 4UT3A 4JA9A 1HP1A 3C5WC 4TUGA 5EQVA 1HO5A 3QFKA 3PSOA 3K7WC 4ORBA 4F0ZA
chains in the Genus database with same CATH topology
2Z72A 2P6BA 3IVEA 4O43A 4DSYA 3H66A 1QFCA 4Q7FA 3H67A 1UF3A 2IAEC 4J6OA 4WWLA 4M0VA 1QHWA 4UT2A 4NZVA 2JOGA 1S95A 2CV9A 3EGHA 3DSDA 2Z06A 3AUZA 1FJMA 1T70A 1HPUA 1T71A 2NYLC 4FBQA 3C9FA 4H2IA 5F3WA 4UT3B 1S3MA 2WDDA 5IOHA 1S3LA 2IE4C 2GJUA 2YEQA 3IB8A 4XPNA 5JJTA 2QJCA 1M63A 2ZBMA 2O8GA 4G9JA 3JYFA 3ZU0A 4I5NC 4FCXA 5DNYA 4YKEA 3H68A 4FBKA 1MF8A 1Z2XA 3EGGA 2QFPA 2HYOA 3E7AA 2USHA 2HYPA 1XM7A 1W24A 3TGHA 1S8EA 4H1YP 2XMOA 3QFMA 4LU9A 2DXNA 1WAO1 1IT6A 3DW8C 2WDCA 3N5UA 4FBWA 1S3NA 2Z1AA 3FLOA 5C1VA 3HVQA 3FGAC 4OR9A 2BDXA 3THNA 1OI8A 3CK2A 3QFOA 3V4YA 1S70A 3QG5C 3RL4A 3ICFA 4DT2A 2AHDA 1USHA 4O5GA 5JPEA 1AUIA 3E7BA 5JPFA 4UWQA 4H2BA 1SU1A 2NXFA 4I5LC 4O4KA 1WARA 4V0XA 4DHLA 1NNWA 1TCOA 1U32A 1OIEA 3PSNA 3AV0A 3H69A 3H62B 4TUIA 2QFRA 4V0WA 1XZWA 2KKNA 2WDEA 3H60A 4ORAA 4KKZA 1II7A 4MP0A 2YVTA 5J28A 2ZOAA 2BQ8X 3D03A 2BCDA 4ZVZA 3H61A 4KBPA 3RL5A 2HY1A 4O24A 3GVEA 4MOYA 1V73A 2NPPC 4MOVA 4ORCA 5GTUA 3THOB 3H63A 4ZX2A 2ZO9B 5HPEA 4HD0A 3E0JA 4H1SA 2R17A 4H2GA 3P71C 1UTEA 4V0VA 3H64A 3K7VC 5B8IA 3IVDA 4LTYA 4JA7A 2WDFA 3IB7A 5INBA 1JK7A 2Q8UA 1KBPA 3KBPA 4H2FA 4IL1A 1G5BA 1OIDA 4LACC 2O8AA 3QFNA 2DFJA 2DXLA 1Z2WA 3RQZA 2IE3C 3RL3A 2A22A 2NYMC 4IYPC 4B2OA 3LL8A 3ZTVA 3T1IA 3DSCA 4UT3A 4JA9A 1HP1A 3C5WC 4TUGA 5EQVA 1HO5A 3QFKA 3PSOA 3K7WC 4ORBA 4F0ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z72 A;  2P6B A;  3IVE A;  4O43 A;  4DSY A;  3H66 A;  1QFC A;  4Q7F A;  3H67 A;  1UF3 A;  2IAE C;  4J6O A;  4WWL A;  4M0V A;  1QHW A;  4UT2 A;  4NZV A;  2JOG A;  1S95 A;  2CV9 A;  3EGH A;  3DSD A;  2Z06 A;  3AUZ A;  1FJM A;  1T70 A;  1HPU A;  1T71 A;  2NYL C;  4FBQ A;  3C9F A;  4H2I A;  5F3W A;  4UT3 B;  1S3M A;  2WDD A;  5IOH A;  1S3L A;  2IE4 C;  2GJU A;  3IB8 A;  4XPN A;  5JJT A;  2QJC A;  1M63 A;  2ZBM A;  2O8G A;  4G9J A;  3JYF A;  3ZU0 A;  4I5N C;  4FCX A;  5DNY A;  4YKE A;  3H68 A;  4FBK A;  1MF8 A;  1Z2X A;  3EGG A;  2QFP A;  2HYO A;  3E7A A;  2USH A;  2HYP A;  1XM7 A;  1W24 A;  3TGH A;  1S8E A;  4H1Y P;  2XMO A;  3QFM A;  4LU9 A;  1WAO 1;  1IT6 A;  3DW8 C;  2WDC A;  3N5U A;  4FBW A;  1S3N A;  2Z1A A;  5C1V A;  3HVQ A;  3FGA C;  4OR9 A;  2BDX A;  3THN A;  1OI8 A;  3CK2 A;  3QFO A;  3V4Y A;  1S70 A;  3QG5 C;  3RL4 A;  3ICF A;  4DT2 A;  2AHD A;  1USH A;  4O5G A;  5JPE A;  1AUI A;  3E7B A;  5JPF A;  4UWQ A;  4H2B A;  1SU1 A;  2NXF A;  4I5L C;  4O4K A;  1WAR A;  4V0X A;  4DHL A;  1NNW A;  1TCO A;  1U32 A;  1OIE A;  3PSN A;  3AV0 A;  3H69 A;  3H62 B;  4TUI A;  2QFR A;  4V0W A;  1XZW A;  2KKN A;  2WDE A;  3H60 A;  4ORA A;  4KKZ A;  1II7 A;  4MP0 A;  2YVT A;  5J28 A;  2BQ8 X;  4ZVZ A;  2BCD A;  3H61 A;  4KBP A;  3RL5 A;  2HY1 A;  4O24 A;  3GVE A;  4MOY A;  1V73 A;  2NPP C;  4MOV A;  4ORC A;  5GTU A;  3THO B;  3H63 A;  4ZX2 A;  5HPE A;  4HD0 A;  4H1S A;  2R17 A;  4H2G A;  3P71 C;  1UTE A;  4V0V A;  3H64 A;  3K7V C;  5B8I A;  3IVD A;  4LTY A;  4JA7 A;  2WDF A;  3IB7 A;  5INB A;  1JK7 A;  2Q8U A;  1KBP A;  3KBP A;  4H2F A;  4IL1 A;  1G5B A;  1OID A;  4LAC C;  2O8A A;  3QFN A;  2DFJ A;  1Z2W A;  3RQZ A;  2IE3 C;  3RL3 A;  2A22 A;  2NYM C;  4IYP C;  4B2O A;  3LL8 A;  3ZTV A;  3T1I A;  3DSC A;  4UT3 A;  4JA9 A;  1HP1 A;  3C5W C;  4TUG A;  5EQV A;  1HO5 A;  3QFK A;  3PSO A;  3K7W C;  4ORB A;  4F0Z A; 
#chains in the Genus database with same CATH topology
 2Z72 A;  2P6B A;  3IVE A;  4O43 A;  4DSY A;  3H66 A;  1QFC A;  4Q7F A;  3H67 A;  1UF3 A;  2IAE C;  4J6O A;  4WWL A;  4M0V A;  1QHW A;  4UT2 A;  4NZV A;  2JOG A;  1S95 A;  2CV9 A;  3EGH A;  3DSD A;  2Z06 A;  3AUZ A;  1FJM A;  1T70 A;  1HPU A;  1T71 A;  2NYL C;  4FBQ A;  3C9F A;  4H2I A;  5F3W A;  4UT3 B;  1S3M A;  2WDD A;  5IOH A;  1S3L A;  2IE4 C;  2GJU A;  2YEQ A;  3IB8 A;  4XPN A;  5JJT A;  2QJC A;  1M63 A;  2ZBM A;  2O8G A;  4G9J A;  3JYF A;  3ZU0 A;  4I5N C;  4FCX A;  5DNY A;  4YKE A;  3H68 A;  4FBK A;  1MF8 A;  1Z2X A;  3EGG A;  2QFP A;  2HYO A;  3E7A A;  2USH A;  2HYP A;  1XM7 A;  1W24 A;  3TGH A;  1S8E A;  4H1Y P;  2XMO A;  3QFM A;  4LU9 A;  2DXN A;  1WAO 1;  1IT6 A;  3DW8 C;  2WDC A;  3N5U A;  4FBW A;  1S3N A;  2Z1A A;  3FLO A;  5C1V A;  3HVQ A;  3FGA C;  4OR9 A;  2BDX A;  3THN A;  1OI8 A;  3CK2 A;  3QFO A;  3V4Y A;  1S70 A;  3QG5 C;  3RL4 A;  3ICF A;  4DT2 A;  2AHD A;  1USH A;  4O5G A;  5JPE A;  1AUI A;  3E7B A;  5JPF A;  4UWQ A;  4H2B A;  1SU1 A;  2NXF A;  4I5L C;  4O4K A;  1WAR A;  4V0X A;  4DHL A;  1NNW A;  1TCO A;  1U32 A;  1OIE A;  3PSN A;  3AV0 A;  3H69 A;  3H62 B;  4TUI A;  2QFR A;  4V0W A;  1XZW A;  2KKN A;  2WDE A;  3H60 A;  4ORA A;  4KKZ A;  1II7 A;  4MP0 A;  2YVT A;  5J28 A;  2ZOA A;  2BQ8 X;  3D03 A;  2BCD A;  4ZVZ A;  3H61 A;  4KBP A;  3RL5 A;  2HY1 A;  4O24 A;  3GVE A;  4MOY A;  1V73 A;  2NPP C;  4MOV A;  4ORC A;  5GTU A;  3THO B;  3H63 A;  4ZX2 A;  2ZO9 B;  5HPE A;  4HD0 A;  3E0J A;  4H1S A;  2R17 A;  4H2G A;  3P71 C;  1UTE A;  4V0V A;  3H64 A;  3K7V C;  5B8I A;  3IVD A;  4LTY A;  4JA7 A;  2WDF A;  3IB7 A;  5INB A;  1JK7 A;  2Q8U A;  1KBP A;  3KBP A;  4H2F A;  4IL1 A;  1G5B A;  1OID A;  4LAC C;  2O8A A;  3QFN A;  2DFJ A;  2DXL A;  1Z2W A;  3RQZ A;  2IE3 C;  3RL3 A;  2A22 A;  2NYM C;  4IYP C;  4B2O A;  3LL8 A;  3ZTV A;  3T1I A;  3DSC A;  4UT3 A;  4JA9 A;  1HP1 A;  3C5W C;  4TUG A;  5EQV A;  1HO5 A;  3QFK A;  3PSO A;  3K7W C;  4ORB A;  4F0Z A; 
#chains in the Genus database with same CATH homology
 2Z72 A;  2P6B A;  3IVE A;  4O43 A;  4DSY A;  3H66 A;  1QFC A;  4Q7F A;  3H67 A;  1UF3 A;  2IAE C;  4J6O A;  4WWL A;  4M0V A;  1QHW A;  4UT2 A;  4NZV A;  2JOG A;  1S95 A;  2CV9 A;  3EGH A;  3DSD A;  2Z06 A;  3AUZ A;  1FJM A;  1T70 A;  1HPU A;  1T71 A;  2NYL C;  4FBQ A;  3C9F A;  4H2I A;  5F3W A;  4UT3 B;  1S3M A;  2WDD A;  5IOH A;  1S3L A;  2IE4 C;  2GJU A;  2YEQ A;  3IB8 A;  4XPN A;  5JJT A;  2QJC A;  1M63 A;  2ZBM A;  2O8G A;  4G9J A;  3JYF A;  3ZU0 A;  4I5N C;  4FCX A;  5DNY A;  4YKE A;  3H68 A;  4FBK A;  1MF8 A;  1Z2X A;  3EGG A;  2QFP A;  2HYO A;  3E7A A;  2USH A;  2HYP A;  1XM7 A;  1W24 A;  3TGH A;  1S8E A;  4H1Y P;  2XMO A;  3QFM A;  4LU9 A;  2DXN A;  1WAO 1;  1IT6 A;  3DW8 C;  2WDC A;  3N5U A;  4FBW A;  1S3N A;  2Z1A A;  3FLO A;  5C1V A;  3HVQ A;  3FGA C;  4OR9 A;  2BDX A;  3THN A;  1OI8 A;  3CK2 A;  3QFO A;  3V4Y A;  1S70 A;  3QG5 C;  3RL4 A;  3ICF A;  4DT2 A;  2AHD A;  1USH A;  4O5G A;  5JPE A;  1AUI A;  3E7B A;  5JPF A;  4UWQ A;  4H2B A;  1SU1 A;  2NXF A;  4I5L C;  4O4K A;  1WAR A;  4V0X A;  4DHL A;  1NNW A;  1TCO A;  1U32 A;  1OIE A;  3PSN A;  3AV0 A;  3H69 A;  3H62 B;  4TUI A;  2QFR A;  4V0W A;  1XZW A;  2KKN A;  2WDE A;  3H60 A;  4ORA A;  4KKZ A;  1II7 A;  4MP0 A;  2YVT A;  5J28 A;  2ZOA A;  2BQ8 X;  3D03 A;  2BCD A;  4ZVZ A;  3H61 A;  4KBP A;  3RL5 A;  2HY1 A;  4O24 A;  3GVE A;  4MOY A;  1V73 A;  2NPP C;  4MOV A;  4ORC A;  5GTU A;  3THO B;  3H63 A;  4ZX2 A;  2ZO9 B;  5HPE A;  4HD0 A;  3E0J A;  4H1S A;  2R17 A;  4H2G A;  3P71 C;  1UTE A;  4V0V A;  3H64 A;  3K7V C;  5B8I A;  3IVD A;  4LTY A;  4JA7 A;  2WDF A;  3IB7 A;  5INB A;  1JK7 A;  2Q8U A;  1KBP A;  3KBP A;  4H2F A;  4IL1 A;  1G5B A;  1OID A;  4LAC C;  2O8A A;  3QFN A;  2DFJ A;  2DXL A;  1Z2W A;  3RQZ A;  2IE3 C;  3RL3 A;  2A22 A;  2NYM C;  4IYP C;  4B2O A;  3LL8 A;  3ZTV A;  3T1I A;  3DSC A;  4UT3 A;  4JA9 A;  1HP1 A;  3C5W C;  4TUG A;  5EQV A;  1HO5 A;  3QFK A;  3PSO A;  3K7W C;  4ORB A;  4F0Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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