3RPFA

Protein-protein complex of subunit 1 and 2 of molybdopterin-converting factor from helicobacter pylori 26695
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
145
structure length
145
Chain Sequence
AVLKIIQGALDTRELLKAYQEEACAKNFGAFCVFVGIVRKEDNIQGLSFDIYEALLKTWFEKWHHKAKDLGVVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWKYDLIHNKRIYAKERSHPLKGSGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Molybdopterin synthase catalytic subunit
publication title Protein-protein complex of subunit 1 and 2 of Molybdopterin-converting factor from Helicobacter pylori 26695
rcsb
source organism Helicobacter pylori
total genus 44
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature ec 2.8.1.12: Molybdopterin synthase.
pdb deposition date 2011-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02391 MoaE MoaE protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.40 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Molybdopterin biosynthesis MoaE subunit 3rpfA00
1FM0E 2Q5WE 3BIIE 2QIEA 5MPOC 1NVJA 1NVIE 2WP4A 1FMAE 3RPFA 2OMDA 4AP8A
chains in the Genus database with same CATH superfamily
4KWWA 3NVYC 1VQ7H 3C2VA 2I1OA 2QA4H 4WCEJ 3SR6C 1QVFH 4IO9J 3G4SH 2B7NA 3PIOJ 3DLLJ 1YTKA 1VQKH 2QIEA 4YYYA 4IOCJ 1OTPA 1QPRA 5HUPA 3CF5J 1KD1J 1Q82J 5EP8A 3CMAH 1FM0E 3PIPJ 1SIJA 1RM6A 3AN1A 2E3TA 1YTEA 3GNNA 3C2RA 3NVVC 3NRZC 1M1KJ 1JROB 4EADA 1Q81J 3CC2H 3VMMA 2W54B 4ZOHA 3CXCH 3CCVH 2TPTA 5GADN 1FFUB 4USAA 4UY8M 3OW2H 5H1SO 3H5QA 1SB3A 1ZXIB 3CCLH 2OTLH 3J7ZM 1NVIE 1VLBA 4GA6A 5DM6J 3CC7H 3WNZA 3L0GA 3G6EH 2Q5WE 3C2FA 1K9MJ 1FO4A 1DGJA 1QAPA 1V97A 4AP8A 2PA2A 1VQPH 3FC4A 4GA4A 5MLCO 1K73J 5GAGN 4C7YA 3NS1C 1Y69K 1VQLH 4GA5A 3I56H 1YJNH 1QVGH 1WKIA 3I55H 1N5XA 3CCUH 3WO0A 5DM7J 3AM9A 5HL7J 1VQ9H 1NVJA 1VQ5H 2WP4A 5JVHJ 1Q7YJ 2W55B 1S72H 1N63B 3ETRC 3FAHA 1YI2H 5MPOC 2W3SB 2QEXH 1VQMH 5AN9F 4LHMA 4US9A 1JRPB 3EUB4 1VQ8H 3CD6H 2B7PA 3NVWC 1YHQH 3G71H 1VQOH 3C2EA 1FFVB 1Q86J 1YTDA 5AYYA 1VQNH 3AMZA 1M90J 4WFAJ 3PAJA 5AYZA 1QPOA 5AYXA 3WO1A 4YEKA 1KC8J 4WFBJ 4WF9J 3RPFA 3CCMH 1YJWH 3L4PA 1O4UA 5HULA 4X46A 3BIIE 1NJIJ 1N60B 2DSJA 2ZJPJ 2JBMA 5EY3A 3CCJH 1YIJH 1FIQC 3CCEH 1VQ4H 5GAHN 2J0FA 5HUOA 1YJ9H 1JJ2H 3CC4H 4WFNJ 1W2BH 4U67J 1WYGA 4US8A 1UOUA 4KWVA 5GAEN 3CPWH 3CMEH 5JVGJ 1YITH 4IOAJ 1N5WB 2B7QA 3CCQH 1K8AJ 1N62B 4C7ZA 4C80A 2ZJQJ 1VQ6H 3B9JC 4EAFA 3CCRH 1N8RJ 2OTJH 4XR5A 1BRWA 3TQVA 1VDVA 1FMAE 1QPQA 4I9AA 2ZJRJ 3NVZC 1KQSH 2WK6A 1N61B 1QPNA 2W3RB 3C2OA 1AZYA 3CCSH 2I14A 2OMDA 2WK5A 1X1OA
chains in the Genus database with same CATH topology
1FM0E 2Q5WE 3BIIE 2QIEA 5MPOC 1NVJA 1NVIE 2WP4A 1FMAE 3RPFA 2OMDA 4AP8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FM0 E;  2Q5W E;  3BII E;  2QIE A;  5MPO C;  1NVJ A;  1NVI E;  2WP4 A;  1FMA E;  3RPF A;  2OMD A;  4AP8 A; 
#chains in the Genus database with same CATH topology
 4KWW A;  3NVY C;  1VQ7 H;  3C2V A;  2I1O A;  2QA4 H;  4WCE J;  3SR6 C;  1QVF H;  4IO9 J;  3G4S H;  2B7N A;  3PIO J;  3DLL J;  1YTK A;  1VQK H;  2QIE A;  4YYY A;  4IOC J;  1OTP A;  1QPR A;  5HUP A;  3CF5 J;  1KD1 J;  1Q82 J;  5EP8 A;  3CMA H;  1FM0 E;  3PIP J;  1SIJ A;  1RM6 A;  3AN1 A;  2E3T A;  1YTE A;  3GNN A;  3C2R A;  3NVV C;  3NRZ C;  1M1K J;  1JRO B;  4EAD A;  1Q81 J;  3CC2 H;  3VMM A;  2W54 B;  4ZOH A;  3CXC H;  3CCV H;  2TPT A;  5GAD N;  1FFU B;  4USA A;  4UY8 M;  3OW2 H;  5H1S O;  3H5Q A;  1SB3 A;  1ZXI B;  3CCL H;  2OTL H;  3J7Z M;  1NVI E;  1VLB A;  4GA6 A;  5DM6 J;  3CC7 H;  3WNZ A;  3L0G A;  3G6E H;  2Q5W E;  3C2F A;  1K9M J;  1FO4 A;  1DGJ A;  1QAP A;  1V97 A;  4AP8 A;  2PA2 A;  1VQP H;  3FC4 A;  4GA4 A;  5MLC O;  1K73 J;  5GAG N;  4C7Y A;  3NS1 C;  1Y69 K;  1VQL H;  4GA5 A;  3I56 H;  1YJN H;  1QVG H;  1WKI A;  3I55 H;  1N5X A;  3CCU H;  3WO0 A;  5DM7 J;  3AM9 A;  5HL7 J;  1VQ9 H;  1NVJ A;  1VQ5 H;  2WP4 A;  5JVH J;  1Q7Y J;  2W55 B;  1S72 H;  1N63 B;  3ETR C;  3FAH A;  1YI2 H;  5MPO C;  2W3S B;  2QEX H;  1VQM H;  5AN9 F;  4LHM A;  4US9 A;  1JRP B;  3EUB 4;  1VQ8 H;  3CD6 H;  2B7P A;  3NVW C;  1YHQ H;  3G71 H;  1VQO H;  3C2E A;  1FFV B;  1Q86 J;  1YTD A;  5AYY A;  1VQN H;  3AMZ A;  1M90 J;  4WFA J;  3PAJ A;  5AYZ A;  1QPO A;  5AYX A;  3WO1 A;  4YEK A;  1KC8 J;  4WFB J;  4WF9 J;  3RPF A;  3CCM H;  1YJW H;  3L4P A;  1O4U A;  5HUL A;  4X46 A;  3BII E;  1NJI J;  1N60 B;  2DSJ A;  2ZJP J;  2JBM A;  5EY3 A;  3CCJ H;  1YIJ H;  1FIQ C;  3CCE H;  1VQ4 H;  5GAH N;  2J0F A;  5HUO A;  1YJ9 H;  1JJ2 H;  3CC4 H;  4WFN J;  1W2B H;  4U67 J;  1WYG A;  4US8 A;  1UOU A;  4KWV A;  5GAE N;  3CPW H;  3CME H;  5JVG J;  1YIT H;  4IOA J;  1N5W B;  2B7Q A;  3CCQ H;  1K8A J;  1N62 B;  4C7Z A;  4C80 A;  2ZJQ J;  1VQ6 H;  3B9J C;  4EAF A;  3CCR H;  1N8R J;  2OTJ H;  4XR5 A;  1BRW A;  3TQV A;  1VDV A;  1FMA E;  1QPQ A;  4I9A A;  2ZJR J;  3NVZ C;  1KQS H;  2WK6 A;  1N61 B;  1QPN A;  2W3R B;  3C2O A;  1AZY A;  3CCS H;  2I14 A;  2OMD A;  2WK5 A;  1X1O A; 
#chains in the Genus database with same CATH homology
 1FM0 E;  2Q5W E;  3BII E;  2QIE A;  5MPO C;  1NVJ A;  1NVI E;  2WP4 A;  1FMA E;  3RPF A;  2OMD A;  4AP8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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