3RRPA

Crystal structure of fumarate hydratase fum from mycobacterium abscessus with malate bound
Total Genus 182
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
465
structure length
465
Chain Sequence
SEQQYRIEHDTMGEVRVPAEALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNKDLGLLAAEKADAIIAAAQEIADGKHDDQFPIDVFQTGSGTSSNMNANEVIASIAAQATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALEYLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAVGTGLNAPDGFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIANDIRWMGSGPLTGLGEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAITVGGLSGAFELNVYIPVMARNLLESFTLLANVSRLFVDKCVDGLVANEDHLRTLAESSPSIVTPLNSAIGYEEAAAVAKEALKERKTIRQTVIDRGLIGDKLSIEELDKRLDVLAMAKVKD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords Probable fumarate hydratase Fum
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
source organism Mycobacterium abscessus
total genus 182
structure length 465
sequence length 465
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3rrpA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3rrpA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3rrpA02
4C5RA 4C5UA 2VD6A 2O78A 4ADLA 1YFMA 1TJVA 2O7FA 1Q5NA 4C5SA 1DCNA 2O7EA 3CZOA 5F92A 1K62A 3NO9A 1TJWA 3R6QA 4EFCA 1YISA 2PTRA 1FUQA 4APAA 1W27A 2OHYA 2O7BA 3R6YA 4V2RA 2PTSA 1VDKA 4NLEA 4BABA 5HW2A 2QVEA 2O6YA 1C3CA 4BAAA 1I0AA 2O7DA 1FUPA 4ADMA 4C6GA 1HY1A 3E04A 1RE5A 1J3UA 2NYFA 1GK2A 1T6PA 3C8TA 1Y2MA 3RRPA 2HVGA 5D6BA 4CQ5A 2J91A 2RJRA 4APBA 4FFXA 2QGAB 3GZHA 1KQ7A 3GTDA 2FUSA 3R6VA 2PTQA 2RJSA 4MX2A 4V2QA 3QBPA 1EB4A 1GK3A 1U15A 3OCEA 1JSWA 5F91A 4HGVA 2YIIA 4FLCA 3UNVA 2E9FA 2X75A 1GKMA 2NYNA 1YFEA 3KDZA 5EYVA 1TJ7A 1B8FA 3TV2A 1DOFA 3BHGA 3KDYA 1HY0A 3NZ4A 4EEIA 1T6JA 1C3UA 1K7WA 1FUOA 1FURA 4NSLA 1XWOA 1U16A 1TJUA 5EYTA 2PFMA 3RD8A 1GKJA 1AUWA 3OCFA
chains in the Genus database with same CATH superfamily
4C5RA 4C5UA 2JAWA 2VD6A 2O78A 4ADLA 1YFMA 1TJVA 1XL8A 2O7FA 4NFLA 1Q5NA 4C5SA 1DCNA 3F4RA 2O7EA 3CZOA 5F92A 1K62A 3NO9A 1TJWA 3R6QA 4EFCA 1YISA 4L57A 2PTRA 1FUQA 1Q91A 4APAA 1W27A 2OHYA 2O7BA 3R6YA 4V2RA 2PTSA 1VDKA 4NLEA 3CRVA 4BABA 5HW2A 2JAOA 2QVEA 3U19A 2O6YA 1C3CA 4BAAA 1I0AA 2O7DA 1XLYA 1FUPA 1MH9A 2D28C 4ADMA 4C6GA 1HY1A 5M0IA 1T9HA 3E04A 1RE5A 1J3UA 2NYFA 3CI0K 1IW7D 1Q92A 1GK2A 4L6CA 1T6PA 3C8TA 1Y2MA 3RRPA 2HVGA 5D6BA 1XMCA 4WNLA 2FENA 4CQ5A 2J91A 3F4SA 5M0JA 1Z4QA 1U0LA 2RJRA 1XMDA 4APBA 4FFXA 2QGAB 4YIHA 3GZHA 1KQ7A 3GTDA 2FUSA 3R6VA 3CRW1 2PTQA 1Z4KA 2RJSA 3F4TA 2I7DA 1Z4LA 4MX2A 1Z4MA 4V2QA 2YV5A 2D27A 3QBPA 4MWOA 1EB4A 1GK3A 2FELA 1U15A 1Z4IA 3OCEA 1JSWA 5F91A 4HGVA 2YIIA 2JARA 1Z4JA 4FLCA 3UNVA 2E9FA 2JAUA 2X75A 1XL7A 4IQJM 1GKMA 2NYNA 4A15A 2VSFA 1YFEA 3KDZA 5EYVA 1TJ7A 1B8FA 3TV2A 4E88A 1DOFA 3BHGA 2RCNA 1HY0A 3KDYA 3NZ4A 4EEIA 1T6JA 1C3UA 1K7WA 1FUOA 1FURA 4L6AA 4MUMA 4NSLA 1XWOA 1U16A 2VL7A 1Z4PX 1TJUA 4YIKA 5EYTA 2PFMA 3BWVA 3RD8A 1GKJA 3U13A 5H8WA 1AUWA 3OCFA
chains in the Genus database with same CATH topology
4C5RA 4C5UA 2VD6A 2O78A 4ADLA 1YFMA 1TJVA 2O7FA 1Q5NA 4C5SA 1DCNA 2O7EA 3CZOA 5F92A 1K62A 3NO9A 1TJWA 3R6QA 4EFCA 1YISA 2PTRA 1FUQA 4APAA 1W27A 2OHYA 2O7BA 3R6YA 4V2RA 2PTSA 1VDKA 4NLEA 4BABA 5HW2A 2QVEA 2O6YA 1C3CA 4BAAA 1I0AA 2O7DA 1FUPA 4ADMA 4C6GA 1HY1A 3E04A 1RE5A 1J3UA 2NYFA 1GK2A 1T6PA 3C8TA 1Y2MA 3RRPA 2HVGA 5D6BA 4CQ5A 2J91A 2RJRA 4APBA 4FFXA 2QGAB 3GZHA 1KQ7A 3GTDA 2FUSA 3R6VA 2PTQA 2RJSA 4MX2A 4V2QA 3QBPA 1EB4A 1GK3A 1U15A 3OCEA 1JSWA 5F91A 4HGVA 2YIIA 4FLCA 3UNVA 2E9FA 2X75A 1GKMA 2NYNA 1YFEA 3KDZA 5EYVA 1TJ7A 1B8FA 3TV2A 1DOFA 3BHGA 3KDYA 1HY0A 3NZ4A 4EEIA 1T6JA 1C3UA 1K7WA 1FUOA 1FURA 4NSLA 1XWOA 1U16A 1TJUA 5EYTA 2PFMA 3RD8A 1GKJA 1AUWA 3OCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C5R A;  4C5U A;  2VD6 A;  2O78 A;  4ADL A;  1YFM A;  1TJV A;  2O7F A;  1Q5N A;  4C5S A;  1DCN A;  2O7E A;  3CZO A;  5F92 A;  1K62 A;  3NO9 A;  1TJW A;  3R6Q A;  4EFC A;  1YIS A;  2PTR A;  1FUQ A;  4APA A;  1W27 A;  2OHY A;  2O7B A;  3R6Y A;  4V2R A;  2PTS A;  1VDK A;  4NLE A;  4BAB A;  5HW2 A;  2QVE A;  2O6Y A;  1C3C A;  4BAA A;  1I0A A;  2O7D A;  1FUP A;  4ADM A;  4C6G A;  1HY1 A;  3E04 A;  1RE5 A;  1J3U A;  2NYF A;  1GK2 A;  1T6P A;  3C8T A;  1Y2M A;  3RRP A;  2HVG A;  5D6B A;  4CQ5 A;  2J91 A;  2RJR A;  4APB A;  4FFX A;  2QGA B;  3GZH A;  1KQ7 A;  3GTD A;  2FUS A;  3R6V A;  2PTQ A;  2RJS A;  4MX2 A;  4V2Q A;  3QBP A;  1EB4 A;  1GK3 A;  1U15 A;  3OCE A;  1JSW A;  5F91 A;  4HGV A;  2YII A;  4FLC A;  3UNV A;  2E9F A;  2X75 A;  1GKM A;  2NYN A;  1YFE A;  3KDZ A;  5EYV A;  1TJ7 A;  1B8F A;  3TV2 A;  1DOF A;  3BHG A;  3KDY A;  1HY0 A;  3NZ4 A;  4EEI A;  1T6J A;  1C3U A;  1K7W A;  1FUO A;  1FUR A;  4NSL A;  1XWO A;  1U16 A;  1TJU A;  5EYT A;  2PFM A;  3RD8 A;  1GKJ A;  1AUW A;  3OCF A; 
#chains in the Genus database with same CATH topology
 4C5R A;  4C5U A;  2JAW A;  2VD6 A;  2O78 A;  4ADL A;  1YFM A;  1TJV A;  1XL8 A;  2O7F A;  4NFL A;  1Q5N A;  4C5S A;  1DCN A;  3F4R A;  2O7E A;  3CZO A;  5F92 A;  1K62 A;  3NO9 A;  1TJW A;  3R6Q A;  4EFC A;  1YIS A;  4L57 A;  2PTR A;  1FUQ A;  1Q91 A;  4APA A;  1W27 A;  2OHY A;  2O7B A;  3R6Y A;  4V2R A;  2PTS A;  1VDK A;  4NLE A;  3CRV A;  4BAB A;  5HW2 A;  2JAO A;  2QVE A;  3U19 A;  2O6Y A;  1C3C A;  4BAA A;  1I0A A;  2O7D A;  1XLY A;  1FUP A;  1MH9 A;  2D28 C;  4ADM A;  4C6G A;  1HY1 A;  5M0I A;  1T9H A;  3E04 A;  1RE5 A;  1J3U A;  2NYF A;  3CI0 K;  1IW7 D;  1Q92 A;  1GK2 A;  4L6C A;  1T6P A;  3C8T A;  1Y2M A;  3RRP A;  2HVG A;  5D6B A;  1XMC A;  4WNL A;  2FEN A;  4CQ5 A;  2J91 A;  3F4S A;  5M0J A;  1Z4Q A;  1U0L A;  2RJR A;  1XMD A;  4APB A;  4FFX A;  2QGA B;  4YIH A;  3GZH A;  1KQ7 A;  3GTD A;  2FUS A;  3R6V A;  3CRW 1;  2PTQ A;  1Z4K A;  2RJS A;  3F4T A;  2I7D A;  1Z4L A;  4MX2 A;  1Z4M A;  4V2Q A;  2YV5 A;  2D27 A;  3QBP A;  4MWO A;  1EB4 A;  1GK3 A;  2FEL A;  1U15 A;  1Z4I A;  3OCE A;  1JSW A;  5F91 A;  4HGV A;  2YII A;  2JAR A;  1Z4J A;  4FLC A;  3UNV A;  2E9F A;  2JAU A;  2X75 A;  1XL7 A;  4IQJ M;  1GKM A;  2NYN A;  4A15 A;  2VSF A;  1YFE A;  3KDZ A;  5EYV A;  1TJ7 A;  1B8F A;  3TV2 A;  4E88 A;  1DOF A;  3BHG A;  2RCN A;  1HY0 A;  3KDY A;  3NZ4 A;  4EEI A;  1T6J A;  1C3U A;  1K7W A;  1FUO A;  1FUR A;  4L6A A;  4MUM A;  4NSL A;  1XWO A;  1U16 A;  2VL7 A;  1Z4P X;  1TJU A;  4YIK A;  5EYT A;  2PFM A;  3BWV A;  3RD8 A;  1GKJ A;  3U13 A;  5H8W A;  1AUW A;  3OCF A; 
#chains in the Genus database with same CATH homology
 4C5R A;  4C5U A;  2VD6 A;  2O78 A;  4ADL A;  1YFM A;  1TJV A;  2O7F A;  1Q5N A;  4C5S A;  1DCN A;  2O7E A;  3CZO A;  5F92 A;  1K62 A;  3NO9 A;  1TJW A;  3R6Q A;  4EFC A;  1YIS A;  2PTR A;  1FUQ A;  4APA A;  1W27 A;  2OHY A;  2O7B A;  3R6Y A;  4V2R A;  2PTS A;  1VDK A;  4NLE A;  4BAB A;  5HW2 A;  2QVE A;  2O6Y A;  1C3C A;  4BAA A;  1I0A A;  2O7D A;  1FUP A;  4ADM A;  4C6G A;  1HY1 A;  3E04 A;  1RE5 A;  1J3U A;  2NYF A;  1GK2 A;  1T6P A;  3C8T A;  1Y2M A;  3RRP A;  2HVG A;  5D6B A;  4CQ5 A;  2J91 A;  2RJR A;  4APB A;  4FFX A;  2QGA B;  3GZH A;  1KQ7 A;  3GTD A;  2FUS A;  3R6V A;  2PTQ A;  2RJS A;  4MX2 A;  4V2Q A;  3QBP A;  1EB4 A;  1GK3 A;  1U15 A;  3OCE A;  1JSW A;  5F91 A;  4HGV A;  2YII A;  4FLC A;  3UNV A;  2E9F A;  2X75 A;  1GKM A;  2NYN A;  1YFE A;  3KDZ A;  5EYV A;  1TJ7 A;  1B8F A;  3TV2 A;  1DOF A;  3BHG A;  3KDY A;  1HY0 A;  3NZ4 A;  4EEI A;  1T6J A;  1C3U A;  1K7W A;  1FUO A;  1FUR A;  4NSL A;  1XWO A;  1U16 A;  1TJU A;  5EYT A;  2PFM A;  3RD8 A;  1GKJ A;  1AUW A;  3OCF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...