3RT4A

Structural basis of recognition of pathogen-associated molecular patterns and inhibition of proinflammatory cytokines by camel peptidoglycan recognition protein
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
171
structure length
171
Chain Sequence
EDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHTAGSHCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPISIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRDVQPTLSPGDRLYEIIQTWSHYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Peptidoglycan recognition protein 1
publication title Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein.
pubmed doi rcsb
total genus 57
structure length 171
sequence length 171
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 3rt4A00
4BOLA 2CB3A 2RKQA 2WKXA 2R90A 2APHA 1SK4A 2BH7A 4BXEA 3RT4A 2L47A 2Y28A 5E0BA 2Z9NA 4Z8IA 3QV4A 3NG4A 2EAVA 3HMBA 2EAXA 1TWQA 4KNLA 3D2ZA 4Q8SA 4BJ4A 1SXRA 4OUGA 3USXA 3UMLA 3QJ1A 4OLSA 2AR3A 3QS0A 3RDRA 4BXJA 1J3GA 1OHTA 3OGXA 2XZ8A 3TRUA 3NNOA 2Y2DA 3UMQA 4IVVA 4BPAA 4BXDA 3T39A 5E0AA 1AROL 3UILA 4KNKA 2Y2CA 3O4KA 3EP1A 1SK3A 4Q9EA 2Y2EA 2Y2BA 2F2LX 3D2YA 4GF9A 4FNNA 5DWFA 3LATA 1YCKA 4X36A 3CG9A 3CXAA 1YB0A 1LBAA 4ORVA 1S2JA 3T2VA 2R2KA 4OPPA 3CORA 5CTVA 4ZXMA 2XZ4A 2F2LA 3NW3A 3C2XA 1Z6IA
chains in the Genus database with same CATH superfamily
4BOLA 2CB3A 2RKQA 2WKXA 2R90A 2APHA 1SK4A 2BH7A 4BXEA 3RT4A 2L47A 2Y28A 5E0BA 2Z9NA 4Z8IA 3QV4A 3NG4A 2EAVA 3HMBA 2EAXA 1TWQA 4KNLA 3D2ZA 4Q8SA 4BJ4A 1SXRA 4OUGA 3USXA 3UMLA 3QJ1A 4OLSA 2AR3A 3QS0A 3RDRA 4BXJA 1J3GA 1OHTA 3OGXA 2XZ8A 3TRUA 3NNOA 2Y2DA 3UMQA 4IVVA 4BPAA 4BXDA 3T39A 5E0AA 1AROL 3UILA 4KNKA 2Y2CA 3O4KA 3EP1A 1SK3A 4Q9EA 2Y2EA 2Y2BA 2F2LX 3D2YA 4GF9A 4FNNA 5DWFA 3LATA 1YCKA 4X36A 3CG9A 3CXAA 1YB0A 1LBAA 4ORVA 1S2JA 3T2VA 2R2KA 4OPPA 3CORA 5CTVA 4ZXMA 2XZ4A 2F2LA 3NW3A 3C2XA 1Z6IA
chains in the Genus database with same CATH topology
4BOLA 2CB3A 2RKQA 2WKXA 2R90A 2APHA 1SK4A 2BH7A 4BXEA 3RT4A 2L47A 2Y28A 5E0BA 2Z9NA 4Z8IA 3QV4A 3NG4A 2EAVA 3HMBA 2EAXA 1TWQA 4KNLA 3D2ZA 4Q8SA 4BJ4A 1SXRA 4OUGA 3USXA 3UMLA 3QJ1A 4OLSA 2AR3A 3QS0A 3RDRA 4BXJA 1J3GA 1OHTA 3OGXA 2XZ8A 3TRUA 3NNOA 2Y2DA 3UMQA 4IVVA 4BPAA 4BXDA 3T39A 5E0AA 1AROL 3UILA 4KNKA 2Y2CA 3O4KA 3EP1A 1SK3A 4Q9EA 2Y2EA 2Y2BA 2F2LX 3D2YA 4GF9A 4FNNA 5DWFA 3LATA 1YCKA 4X36A 3CG9A 3CXAA 1YB0A 1LBAA 4ORVA 1S2JA 3T2VA 2R2KA 4OPPA 3CORA 5CTVA 4ZXMA 2XZ4A 2F2LA 3NW3A 3C2XA 1Z6IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BOL A;  2CB3 A;  2RKQ A;  2WKX A;  2R90 A;  2APH A;  1SK4 A;  2BH7 A;  4BXE A;  3RT4 A;  2L47 A;  2Y28 A;  5E0B A;  2Z9N A;  4Z8I A;  3QV4 A;  3NG4 A;  2EAV A;  3HMB A;  2EAX A;  1TWQ A;  4KNL A;  3D2Z A;  4Q8S A;  4BJ4 A;  1SXR A;  4OUG A;  3USX A;  3UML A;  3QJ1 A;  4OLS A;  2AR3 A;  3QS0 A;  3RDR A;  4BXJ A;  1J3G A;  1OHT A;  3OGX A;  2XZ8 A;  3TRU A;  3NNO A;  2Y2D A;  3UMQ A;  4IVV A;  4BPA A;  4BXD A;  3T39 A;  5E0A A;  1ARO L;  3UIL A;  4KNK A;  2Y2C A;  3O4K A;  3EP1 A;  1SK3 A;  4Q9E A;  2Y2E A;  2Y2B A;  2F2L X;  3D2Y A;  4GF9 A;  4FNN A;  5DWF A;  3LAT A;  1YCK A;  4X36 A;  3CG9 A;  3CXA A;  1YB0 A;  1LBA A;  4ORV A;  1S2J A;  3T2V A;  2R2K A;  4OPP A;  3COR A;  5CTV A;  4ZXM A;  2XZ4 A;  2F2L A;  3NW3 A;  3C2X A;  1Z6I A; 
#chains in the Genus database with same CATH topology
 4BOL A;  2CB3 A;  2RKQ A;  2WKX A;  2R90 A;  2APH A;  1SK4 A;  2BH7 A;  4BXE A;  3RT4 A;  2L47 A;  2Y28 A;  5E0B A;  2Z9N A;  4Z8I A;  3QV4 A;  3NG4 A;  2EAV A;  3HMB A;  2EAX A;  1TWQ A;  4KNL A;  3D2Z A;  4Q8S A;  4BJ4 A;  1SXR A;  4OUG A;  3USX A;  3UML A;  3QJ1 A;  4OLS A;  2AR3 A;  3QS0 A;  3RDR A;  4BXJ A;  1J3G A;  1OHT A;  3OGX A;  2XZ8 A;  3TRU A;  3NNO A;  2Y2D A;  3UMQ A;  4IVV A;  4BPA A;  4BXD A;  3T39 A;  5E0A A;  1ARO L;  3UIL A;  4KNK A;  2Y2C A;  3O4K A;  3EP1 A;  1SK3 A;  4Q9E A;  2Y2E A;  2Y2B A;  2F2L X;  3D2Y A;  4GF9 A;  4FNN A;  5DWF A;  3LAT A;  1YCK A;  4X36 A;  3CG9 A;  3CXA A;  1YB0 A;  1LBA A;  4ORV A;  1S2J A;  3T2V A;  2R2K A;  4OPP A;  3COR A;  5CTV A;  4ZXM A;  2XZ4 A;  2F2L A;  3NW3 A;  3C2X A;  1Z6I A; 
#chains in the Genus database with same CATH homology
 4BOL A;  2CB3 A;  2RKQ A;  2WKX A;  2R90 A;  2APH A;  1SK4 A;  2BH7 A;  4BXE A;  3RT4 A;  2L47 A;  2Y28 A;  5E0B A;  2Z9N A;  4Z8I A;  3QV4 A;  3NG4 A;  2EAV A;  3HMB A;  2EAX A;  1TWQ A;  4KNL A;  3D2Z A;  4Q8S A;  4BJ4 A;  1SXR A;  4OUG A;  3USX A;  3UML A;  3QJ1 A;  4OLS A;  2AR3 A;  3QS0 A;  3RDR A;  4BXJ A;  1J3G A;  1OHT A;  3OGX A;  2XZ8 A;  3TRU A;  3NNO A;  2Y2D A;  3UMQ A;  4IVV A;  4BPA A;  4BXD A;  3T39 A;  5E0A A;  1ARO L;  3UIL A;  4KNK A;  2Y2C A;  3O4K A;  3EP1 A;  1SK3 A;  4Q9E A;  2Y2E A;  2Y2B A;  2F2L X;  3D2Y A;  4GF9 A;  4FNN A;  5DWF A;  3LAT A;  1YCK A;  4X36 A;  3CG9 A;  3CXA A;  1YB0 A;  1LBA A;  4ORV A;  1S2J A;  3T2V A;  2R2K A;  4OPP A;  3COR A;  5CTV A;  4ZXM A;  2XZ4 A;  2F2L A;  3NW3 A;  3C2X A;  1Z6I A; 
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similar chains in the pdb database (?% sequence similarity)

 
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