3RV1A

Crystal structure of the n-terminal and rnase iii domains of k. polysporus dcr1 e224q mutant
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
242
structure length
217
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule keywords K. polysporus Dcr1
source organism Vanderwaltozyma polyspora
molecule tags Rna binding protein
total genus 79
structure length 217
sequence length 242
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv1A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv1A01
3O2RA 3N3WA 2NUFA 2NUGA 1YYKA 4M30A 1I4SA 1YYOA 2NUEA 2FFLA 3C4BA 1O0WA 1U61A 4OUNA 2A11A 1JFZA 3O2RB 3C4TA 2GSLA 3RV1A 1YZ9A 3RV0A 1RC5A 2EB1A 1RC7A 2QVWA 2EZ6A 4M2ZA 1YYWA 4OOGC
chains in the Genus database with same CATH superfamily
4EZUA 4IM2A 3D2EA 4UDYX 1U00A 1OAOA 2GAFD 1I4DA 1MJGA 3A98A 2OBLA 2NUEA 3OHXM 4R5LA 3D4ZA 2YIBA 5E84A 4IWQA 1HWWA 4EZXA 4AZCB 2YLLA 4H6IA 1OA0A 2ZXQA 4EZZA 3OWGA 1E9VA 4FZPA 4FZSA 1GNTA 3ABHA 1JQKA 2X3XA 2WYHA 4JWEA 3ER8C 3CKDA 3RV0A 4ATMA 2PMRA 3DX2A 4BNEA 4F00A 1SU8A 4JNEA 3O2RA 3C7NA 2YIAA 1QWNA 4AZHA 2WYIA 3O3OB 2Z0OA 3HAHA 3DPOA 3C4TA 1HXKA 1TQUA 2QFFA 2N3KA 4HYBA 3LMFA 3ER9B 3EJUA 3LLLA 4WPEA 1WDZA 4R5JA 4AZCA 1I4SA 3T4AG 2YLAA 3DYTA 4OUNA 2A11A 3D2FA 2Q13A 2ALWA 3EJSA 4PO2A 2GSLA 1GNLA 2EFLA 3EJPA 5KBPA 2YL9A 1ZYLA 3D50A 2OW6A 3D51A 1PS3A 3EJRA 1QWUA 4F01A 1O7DB 2GF4A 3BUDA 2Z8YA 3ZEDA 1ZTDA 1SU7A 4JWDA 4HY9A 3VKHA 3T46A 4KIKB 3SYVA 3CZNA 3I2WA 1I4LA 3RPMA 3C4BA 1O0WA 1U61A 1R33A 2ELBA 3QE6A 5FIGA 1E2UA 2Q12A 3KAVA 4WPCA 4JNFA 4EZYA 2O0I1 2OW7A 2X3VA 2FYVA 3CVRA 4H6HA 1URUA 4AZBA 2QKWA 3KAWA 1DKZA 3DX3A 2EX3B 2EB1A 1DKXA 4B9QA 1YYWA 4R5GA 1TQTA 1ZWWA 4NSWA 3BUIA 3EJTA 3DPQA 3BVUA 2F18A 4AZ6A 4KIKA 2F7RA 2Z0VA 2YL5A 1X03A 4IWPA 3DPPA 3N3WA 3FD9A 4EZNA 3VEBA 4M30A 3DX1A 3DX4A 3DDGA 4AKVA 3BUPA 3BVXA 2D1LA 3ACOA 3UITA 1OA1A 2F7QA 2ND1A 3I01A 1TQWA 3M3WA 1R34A 4I1QA 3Q84A 4R5IA 4EZOA 2F1BA 3I39X 3BUBA 2F7OA 4M0MA 2OO2A 4NQIA 2LXYA 2RT6A 4EZVA 1HTYA 1GN9A 2QXLA 1LQ7A 4EZQA 4FZOA 4JL9A 4IWOA 4AVMA 2YL8A 3BUQA 2X5CA 4AZIA 2RAKA 3SOGA 3D4YA 3OK8A 3T49A 2YL6A 4JLCA 4DYLA 3EJQA 2D4CA 3HAIA 3ERCC 3CAZA 4IM3A 1R5EA 4R5KA 2V0OA 3QNJA 3I04A 2QVWA 1W9MA 4JN4A 1TQSA 1YWMA 4NPHA 3L3PA 5TKYA 3O3NB 2F7PA 4UDXX 2NCZA 2OBMA 1YYOA 4IW0A 1I49A 3B52X 4JWCA 2Z0NA 2WINM 4D8JA 3F7WA 2YKTA 2YIVX 3BVVA 3RV1A 2YI9A 2EZ6A 3CV5A 3PLTA 4HR1B 2EWFA 3T47A 4EZRA 3D52A 5C5BB 3DDFA 1QX1A 4EZTA 3O3MB 5FLEX 4DCNC 2JNSA 1RC7A 1DKYA 4M2ZA 3CZSA 4JWIA 4FM3A 2JNKA 2PY6A 2NUFA 2YI8A 3DX0A 2FFLA 3T48A 3KDRA 1E1DA 1SU6A 2LM0A 4G6QA 3GI7A 1YZ9A 2C08A 4OOGC 4AZGA 2OZNB 4E81A 4H8SA 2RAIA 1TQVA 3QA8A 1YYKA 3BVWA 4HR1A 1SUFA 4AZ7A 3LVTA 5C5BA 4EZPA 3Q0KA 1I4TA 2X3WA 1Y2OA 3BLBA 4EZSA 4AZ5A 1X04A 1O7DC 3HAJA 2NUGA 4IM0A 1UPXA 3L3OM 2FICA 3QWEA 3VEAA 2RAJA 1JFZA 3O2RB 2MI7A 3BVTA 2F1AA 4E3CA 2ND0A 3QNIA 3B53X 2KHOA 2GA9D 1RC5A 3B51X 4EZWA 3G9GA 2EFKA
chains in the Genus database with same CATH topology
4HR1B 3DPPA 4EZUA 4IM2A 3N3WA 3D2EA 3FD9A 1U00A 4UDYX 1OAOA 2GAFD 4EZNA 2EWFA 1MJGA 3A98A 3T47A 4F01A 4EZRA 3VEBA 4M30A 2OBLA 2NUEA 3OHXM 4R5LA 4EZTA 2Z8YA 3O3MB 2YIBA 3ZEDA 3UITA 5E84A 4IWQA 5FLEX 1OA1A 4EZXA 2ND1A 2JNSA 3I01A 1RC7A 1DKYA 1SU7A 4M2ZA 4JWDA 4HY9A 4H6IA 4JWIA 4R5IA 4EZOA 3VKHA 4FM3A 3I39X 2PY6A 3T46A 2NUFA 1OA0A 4KIKB 4EZZA 3OWGA 2YI8A 1E9VA 4M0MA 1GNTA 2FFLA 3T48A 3C4BA 1JQKA 1O0WA 3KDRA 1U61A 2RT6A 1E1DA 1SU6A 5FIGA 4EZVA 1E2UA 2LM0A 1GN9A 4G6QA 4JWEA 3KAVA 3ER8C 4JNFA 2QXLA 3GI7A 4EZQA 1YZ9A 3RV0A 4EZYA 4JL9A 4F00A 4IWOA 4OOGC 2X5CA 1SU8A 4E81A 4JNEA 3O2RA 3C7NA 2YIAA 4H6HA 3QA8A 1YYKA 3T49A 4JLCA 3KAWA 4HR1A 1DKZA 1SUFA 3O3OB 3ERCC 4IM3A 3DPOA 3C4TA 2EX3B 2QFFA 2N3KA 4R5KA 4EZPA 3QNJA 3LMFA 3I04A 4HYBA 2EB1A 3ER9B 2QVWA 1DKXA 1W9MA 4B9QA 1YYWA 4R5GA 4JN4A 4NPHA 5TKYA 3O3NB 4EZSA 4UDXX 2NCZA 2OBMA 2NUGA 4IM0A 1UPXA 1I4SA 3DPQA 1YYOA 3L3OM 4R5JA 4IW0A 3T4AG 3B52X 3VEAA 4OUNA 2A11A 4JWCA 2WINM 4KIKA 4D8JA 1JFZA 3D2FA 3F7WA 3O2RB 2YIVX 4PO2A 4E3CA 2ND0A 2GSLA 3RV1A 3B53X 2YI9A 2KHOA 1GNLA 2GA9D 1RC5A 2EZ6A 3B51X 4EZWA 1ZYLA 4IWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O2R A;  3N3W A;  2NUF A;  2NUG A;  1YYK A;  4M30 A;  1I4S A;  1YYO A;  2NUE A;  2FFL A;  3C4B A;  1O0W A;  1U61 A;  4OUN A;  2A11 A;  1JFZ A;  3O2R B;  3C4T A;  2GSL A;  3RV1 A;  1YZ9 A;  3RV0 A;  1RC5 A;  2EB1 A;  1RC7 A;  2QVW A;  2EZ6 A;  4M2Z A;  1YYW A;  4OOG C; 
#chains in the Genus database with same CATH topology
 4EZU A;  4IM2 A;  3D2E A;  4UDY X;  1U00 A;  1OAO A;  2GAF D;  1I4D A;  1MJG A;  3A98 A;  2OBL A;  2NUE A;  3OHX M;  4R5L A;  3D4Z A;  2YIB A;  5E84 A;  4IWQ A;  1HWW A;  4EZX A;  4AZC B;  2YLL A;  4H6I A;  1OA0 A;  2ZXQ A;  4EZZ A;  3OWG A;  1E9V A;  4FZP A;  4FZS A;  1GNT A;  3ABH A;  1JQK A;  2X3X A;  2WYH A;  4JWE A;  3ER8 C;  3CKD A;  3RV0 A;  4ATM A;  2PMR A;  3DX2 A;  4BNE A;  4F00 A;  1SU8 A;  4JNE A;  3O2R A;  3C7N A;  2YIA A;  1QWN A;  4AZH A;  2WYI A;  3O3O B;  2Z0O A;  3HAH A;  3DPO A;  3C4T A;  1HXK A;  1TQU A;  2QFF A;  2N3K A;  4HYB A;  3LMF A;  3ER9 B;  3EJU A;  3LLL A;  4WPE A;  1WDZ A;  4R5J A;  4AZC A;  1I4S A;  3T4A G;  2YLA A;  3DYT A;  4OUN A;  2A11 A;  3D2F A;  2Q13 A;  2ALW A;  3EJS A;  4PO2 A;  2GSL A;  1GNL A;  2EFL A;  3EJP A;  5KBP A;  2YL9 A;  1ZYL A;  3D50 A;  2OW6 A;  3D51 A;  1PS3 A;  3EJR A;  1QWU A;  4F01 A;  1O7D B;  2GF4 A;  3BUD A;  2Z8Y A;  3ZED A;  1ZTD A;  1SU7 A;  4JWD A;  4HY9 A;  3VKH A;  3T46 A;  4KIK B;  3SYV A;  3CZN A;  3I2W A;  1I4L A;  3RPM A;  3C4B A;  1O0W A;  1U61 A;  1R33 A;  2ELB A;  3QE6 A;  5FIG A;  1E2U A;  2Q12 A;  3KAV A;  4WPC A;  4JNF A;  4EZY A;  2O0I 1;  2OW7 A;  2X3V A;  2FYV A;  3CVR A;  4H6H A;  1URU A;  4AZB A;  2QKW A;  3KAW A;  1DKZ A;  3DX3 A;  2EX3 B;  2EB1 A;  1DKX A;  4B9Q A;  1YYW A;  4R5G A;  1TQT A;  1ZWW A;  4NSW A;  3BUI A;  3EJT A;  3DPQ A;  3BVU A;  2F18 A;  4AZ6 A;  4KIK A;  2F7R A;  2Z0V A;  2YL5 A;  1X03 A;  4IWP A;  3DPP A;  3N3W A;  3FD9 A;  4EZN A;  3VEB A;  4M30 A;  3DX1 A;  3DX4 A;  3DDG A;  4AKV A;  3BUP A;  3BVX A;  2D1L A;  3ACO A;  3UIT A;  1OA1 A;  2F7Q A;  2ND1 A;  3I01 A;  1TQW A;  3M3W A;  1R34 A;  4I1Q A;  3Q84 A;  4R5I A;  4EZO A;  2F1B A;  3I39 X;  3BUB A;  2F7O A;  4M0M A;  2OO2 A;  4NQI A;  2LXY A;  2RT6 A;  4EZV A;  1HTY A;  1GN9 A;  2QXL A;  1LQ7 A;  4EZQ A;  4FZO A;  4JL9 A;  4IWO A;  4AVM A;  2YL8 A;  3BUQ A;  2X5C A;  4AZI A;  2RAK A;  3SOG A;  3D4Y A;  3OK8 A;  3T49 A;  2YL6 A;  4JLC A;  4DYL A;  3EJQ A;  2D4C A;  3HAI A;  3ERC C;  3CAZ A;  4IM3 A;  1R5E A;  4R5K A;  2V0O A;  3QNJ A;  3I04 A;  2QVW A;  1W9M A;  4JN4 A;  1TQS A;  1YWM A;  4NPH A;  3L3P A;  5TKY A;  3O3N B;  2F7P A;  4UDX X;  2NCZ A;  2OBM A;  1YYO A;  4IW0 A;  1I49 A;  3B52 X;  4JWC A;  2Z0N A;  2WIN M;  4D8J A;  3F7W A;  2YKT A;  2YIV X;  3BVV A;  3RV1 A;  2YI9 A;  2EZ6 A;  3CV5 A;  3PLT A;  4HR1 B;  2EWF A;  3T47 A;  4EZR A;  3D52 A;  5C5B B;  3DDF A;  1QX1 A;  4EZT A;  3O3M B;  5FLE X;  4DCN C;  2JNS A;  1RC7 A;  1DKY A;  4M2Z A;  3CZS A;  4JWI A;  4FM3 A;  2JNK A;  2PY6 A;  2NUF A;  2YI8 A;  3DX0 A;  2FFL A;  3T48 A;  3KDR A;  1E1D A;  1SU6 A;  2LM0 A;  4G6Q A;  3GI7 A;  1YZ9 A;  2C08 A;  4OOG C;  4AZG A;  2OZN B;  4E81 A;  4H8S A;  2RAI A;  1TQV A;  3QA8 A;  1YYK A;  3BVW A;  4HR1 A;  1SUF A;  4AZ7 A;  3LVT A;  5C5B A;  4EZP A;  3Q0K A;  1I4T A;  2X3W A;  1Y2O A;  3BLB A;  4EZS A;  4AZ5 A;  1X04 A;  1O7D C;  3HAJ A;  2NUG A;  4IM0 A;  1UPX A;  3L3O M;  2FIC A;  3QWE A;  3VEA A;  2RAJ A;  1JFZ A;  3O2R B;  2MI7 A;  3BVT A;  2F1A A;  4E3C A;  2ND0 A;  3QNI A;  3B53 X;  2KHO A;  2GA9 D;  1RC5 A;  3B51 X;  4EZW A;  3G9G A;  2EFK A; 
#chains in the Genus database with same CATH homology
 4HR1 B;  3DPP A;  4EZU A;  4IM2 A;  3N3W A;  3D2E A;  3FD9 A;  1U00 A;  4UDY X;  1OAO A;  2GAF D;  4EZN A;  2EWF A;  1MJG A;  3A98 A;  3T47 A;  4F01 A;  4EZR A;  3VEB A;  4M30 A;  2OBL A;  2NUE A;  3OHX M;  4R5L A;  4EZT A;  2Z8Y A;  3O3M B;  2YIB A;  3ZED A;  3UIT A;  5E84 A;  4IWQ A;  5FLE X;  1OA1 A;  4EZX A;  2ND1 A;  2JNS A;  3I01 A;  1RC7 A;  1DKY A;  1SU7 A;  4M2Z A;  4JWD A;  4HY9 A;  4H6I A;  4JWI A;  4R5I A;  4EZO A;  3VKH A;  4FM3 A;  3I39 X;  2PY6 A;  3T46 A;  2NUF A;  1OA0 A;  4KIK B;  4EZZ A;  3OWG A;  2YI8 A;  1E9V A;  4M0M A;  1GNT A;  2FFL A;  3T48 A;  3C4B A;  1JQK A;  1O0W A;  3KDR A;  1U61 A;  2RT6 A;  1E1D A;  1SU6 A;  5FIG A;  4EZV A;  1E2U A;  2LM0 A;  1GN9 A;  4G6Q A;  4JWE A;  3KAV A;  3ER8 C;  4JNF A;  2QXL A;  3GI7 A;  4EZQ A;  1YZ9 A;  3RV0 A;  4EZY A;  4JL9 A;  4F00 A;  4IWO A;  4OOG C;  2X5C A;  1SU8 A;  4E81 A;  4JNE A;  3O2R A;  3C7N A;  2YIA A;  4H6H A;  3QA8 A;  1YYK A;  3T49 A;  4JLC A;  3KAW A;  4HR1 A;  1DKZ A;  1SUF A;  3O3O B;  3ERC C;  4IM3 A;  3DPO A;  3C4T A;  2EX3 B;  2QFF A;  2N3K A;  4R5K A;  4EZP A;  3QNJ A;  3LMF A;  3I04 A;  4HYB A;  2EB1 A;  3ER9 B;  2QVW A;  1DKX A;  1W9M A;  4B9Q A;  1YYW A;  4R5G A;  4JN4 A;  4NPH A;  5TKY A;  3O3N B;  4EZS A;  4UDX X;  2NCZ A;  2OBM A;  2NUG A;  4IM0 A;  1UPX A;  1I4S A;  3DPQ A;  1YYO A;  3L3O M;  4R5J A;  4IW0 A;  3T4A G;  3B52 X;  3VEA A;  4OUN A;  2A11 A;  4JWC A;  2WIN M;  4KIK A;  4D8J A;  1JFZ A;  3D2F A;  3F7W A;  3O2R B;  2YIV X;  4PO2 A;  4E3C A;  2ND0 A;  2GSL A;  3RV1 A;  3B53 X;  2YI9 A;  2KHO A;  1GNL A;  2GA9 D;  1RC5 A;  2EZ6 A;  3B51 X;  4EZW A;  1ZYL A;  4IWP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...