3RV1A

Crystal structure of the n-terminal and rnase iii domains of k. polysporus dcr1 e224q mutant
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
242
structure length
217
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Rna binding protein
source organism Vanderwaltozyma polyspora
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
molecule keywords K. polysporus Dcr1
total genus 79
structure length 217
sequence length 242
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv1A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv1A01
4OOGC 3O2RA 2EZ6A 2NUGA 1JFZA 1RC7A 1O0WA 3C4TA 1RC5A 3N3WA 2NUEA 2A11A 4M2ZA 4OUNA 3C4BA 1U61A 3O2RB 1YYOA 4M30A 2FFLA 3RV0A 2NUFA 1YYWA 1I4SA 1YYKA 2EB1A 1YZ9A 2GSLA 2QVWA 3RV1A
chains in the Genus database with same CATH superfamily
3DPPA 3BVXA 4UDYX 3C7NA 1TQTA 1OAOA 3DDFA 4M2ZA 2ELBA 4F00A 2F1BA 4D8JA 3T47A 2Q12A 3ACOA 3I04A 4EZRA 3D4ZA 2D1LA 3Q84A 3EJSA 4JWDA 4DCNC 2JNKA 4R5IA 4FZPA 3HAIA 3D50A 2NUEA 3BUBA 3DX4A 1MJGA 2YKTA 2EX3B 3Q0KA 2RT6A 4HR1A 1RC5A 5TKYA 4H6IA 3BVUA 3B52X 3CAZA 3OWGA 1SU7A 2F7OA 2PMRA 2OZNB 3VEBA 4FM3A 3ER8C 2ALWA 2EFLA 2OBMA 4H8SA 3KDRA 4FZSA 2LM0A 4EZYA 3D4YA 4DYLA 2YL8A 4EZPA 3HAJA 1W9MA 3G9GA 1DKYA 3CVRA 3BUQA 2NUFA 3D2EA 4KIKA 3ER9B 1I4TA 3T49A 1O7DB 1R34A 3M3WA 1ZYLA 2FICA 3DYTA 1QX1A 4AZCB 2Q13A 3SYVA 5C5BB 4WPCA 1E2UA 3D52A 5E84A 1LQ7A 1SU8A 1I49A 2FFLA 1Y2OA 1R33A 4PO2A 4R5LA 1YYKA 2YLAA 1DKZA 3BVWA 3RPMA 4EZUA 4JL9A 2F7PA 2ZXQA 1U61A 4WPEA 3OK8A 3CZSA 3B51X 4IWPA 3I01A 2YI8A 4JWEA 3BVTA 3FD9A 3T4AG 1TQSA 5FIGA 3GI7A 3ZEDA 3DPOA 3BLBA 3DPQA 3CV5A 3O2RB 3A98A 3EJUA 3OHXM 2NCZA 2X3VA 3RV1A 1UPXA 3O2RA 3BUPA 3O3OB 1JFZA 4FZOA 2O0I1 4IM0A 4AZ6A 4NPHA 3C4BA 4JWIA 2F1AA 2JNSA 3L3PA 3VKHA 2YIBA 2F18A 2N3KA 4EZWA 4B9QA 1YWMA 2EZ6A 2RAIA 4HYBA 3C4TA 2ND0A 1HWWA 3DX0A 4AVMA 2Z0VA 3DX1A 4I1QA 1QWNA 2QKWA 2OW6A 1YYWA 4AZ7A 3EJPA 2F7QA 2OO2A 1YZ9A 2LXYA 4IM3A 4R5GA 2X3WA 2RAKA 3BUIA 4OOGC 4JLCA 4EZSA 2ND1A 2WINM 2YIVX 3O3NB 4HY9A 3HAHA 1HXKA 4JNEA 3N3WA 2YL9A 3QE6A 4OUNA 4AZHA 1ZWWA 2C08A 4EZVA 3D51A 4JNFA 2EWFA 4H6HA 3QNIA 3D2FA 4AZCA 1GN9A 2WYIA 5C5BA 2YL6A 2F7RA 4IM2A 2X5CA 1O0WA 3CZNA 1TQVA 4EZOA 4NQIA 3VEAA 3SOGA 1GNTA 1URUA 4AKVA 5KBPA 3UITA 3QWEA 2QXLA 1I4LA 4IWQA 1HTYA 3DDGA 3LLLA 2OBLA 2Z0NA 3EJQA 2KHOA 3O3MB 2GA9D 1I4DA 2YLLA 2YL5A 3T46A 2A11A 1WDZA 1TQUA 2V0OA 4EZNA 3CKDA 1X03A 1JQKA 1E9VA 1SUFA 3RV0A 3LVTA 3L3OM 1I4SA 2D4CA 3BVVA 4JWCA 1RC7A 3LMFA 2FYVA 3QA8A 2PY6A 2EFKA 4R5KA 4EZZA 2GF4A 1PS3A 2QFFA 4AZ5A 4HR1B 4AZBA 1R5EA 1OA0A 3I39X 4G6QA 4IWOA 3ABHA 4EZXA 2YI9A 3BUDA 3T48A 4UDXX 4AZGA 4R5JA 2OW7A 2Z8YA 1ZTDA 1YYOA 4EZQA 1QWUA 2X3XA 3KAVA 3I2WA 2YIAA 1O7DC 4EZTA 2NUGA 4KIKB 3PLTA 2GAFD 1SU6A 1E1DA 1OA1A 4ATMA 4NSWA 3QNJA 1TQWA 3EJTA 3B53X 2EB1A 2Z0OA 4M0MA 3KAWA 3DX2A 3ERCC 2RAJA 4BNEA 4AZIA 1X04A 3EJRA 3DX3A 4JN4A 1GNLA 5FLEX 4F01A 1U00A 4E81A 2MI7A 4M30A 2WYHA 4E3CA 3F7WA 2GSLA 1DKXA 4IW0A 2QVWA
chains in the Genus database with same CATH topology
2EZ6A 4JWCA 1ZYLA 3DPPA 4UDYX 1RC7A 3C7NA 3LMFA 4HYBA 3C4TA 2ND0A 1OAOA 3QA8A 2PY6A 4M2ZA 1E2UA 5E84A 1SU8A 4F00A 4D8JA 4R5KA 4EZZA 3T47A 2FFLA 2QFFA 1YYWA 4HR1B 4PO2A 1OA0A 4R5LA 3I39X 3I04A 4G6QA 4IWOA 1YYKA 1YZ9A 4EZRA 4IM3A 4R5GA 4EZXA 2YI9A 4OOGC 4JWDA 3T48A 1DKZA 4JLCA 4R5IA 4UDXX 4R5JA 4EZSA 2ND1A 2WINM 2YIVX 3O3NB 4HY9A 4JL9A 4EZUA 4JNEA 3N3WA 2NUEA 2Z8YA 4OUNA 1U61A 1YYOA 4EZQA 4EZVA 4JNFA 2EWFA 3KAVA 4H6HA 2YIAA 3D2FA 1MJGA 3B51X 1GN9A 2EX3B 4IWPA 3I01A 2YI8A 4EZTA 4IM2A 4JWEA 2NUGA 4KIKB 3FD9A 3T4AG 2X5CA 2GAFD 2RT6A 1O0WA 4HR1A 1RC5A 5FIGA 1SU6A 5TKYA 1E1DA 3GI7A 4EZOA 3ZEDA 3DPOA 1OA1A 3VEAA 4H6IA 3DPQA 1GNTA 3O2RB 3B52X 3A98A 3QNJA 3OWGA 1SU7A 3UITA 2QXLA 3OHXM 3B53X 4FM3A 4IWQA 3VEBA 2NCZA 3ER8C 2EB1A 2OBMA 3KDRA 4M0MA 3KAWA 3RV1A 2LM0A 2OBLA 4EZYA 1UPXA 3O2RA 3ERCC 3O3OB 2KHOA 1JFZA 3O3MB 4EZPA 2GA9D 1W9MA 1DKYA 3T46A 2A11A 4IM0A 4JN4A 1GNLA 5FLEX 4NPHA 4F01A 1U00A 4E81A 3C4BA 4M30A 4JWIA 4EZNA 1JQKA 1E9VA 1SUFA 3RV0A 2NUFA 2JNSA 3D2EA 1I4SA 3L3OM 4KIKA 3VKHA 4E3CA 3F7WA 3ER9B 2YIBA 2N3KA 2GSLA 4EZWA 1DKXA 4IW0A 4B9QA 3T49A 2QVWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OOG C;  3O2R A;  2EZ6 A;  2NUG A;  1JFZ A;  1RC7 A;  1O0W A;  3C4T A;  1RC5 A;  3N3W A;  2NUE A;  2A11 A;  4M2Z A;  4OUN A;  3C4B A;  1U61 A;  3O2R B;  1YYO A;  4M30 A;  2FFL A;  3RV0 A;  2NUF A;  1YYW A;  1I4S A;  1YYK A;  2EB1 A;  1YZ9 A;  2GSL A;  2QVW A;  3RV1 A; 
#chains in the Genus database with same CATH topology
 3DPP A;  3BVX A;  4UDY X;  3C7N A;  1TQT A;  1OAO A;  3DDF A;  4M2Z A;  2ELB A;  4F00 A;  2F1B A;  4D8J A;  3T47 A;  2Q12 A;  3ACO A;  3I04 A;  4EZR A;  3D4Z A;  2D1L A;  3Q84 A;  3EJS A;  4JWD A;  4DCN C;  2JNK A;  4R5I A;  4FZP A;  3HAI A;  3D50 A;  2NUE A;  3BUB A;  3DX4 A;  1MJG A;  2YKT A;  2EX3 B;  3Q0K A;  2RT6 A;  4HR1 A;  1RC5 A;  5TKY A;  4H6I A;  3BVU A;  3B52 X;  3CAZ A;  3OWG A;  1SU7 A;  2F7O A;  2PMR A;  2OZN B;  3VEB A;  4FM3 A;  3ER8 C;  2ALW A;  2EFL A;  2OBM A;  4H8S A;  3KDR A;  4FZS A;  2LM0 A;  4EZY A;  3D4Y A;  4DYL A;  2YL8 A;  4EZP A;  3HAJ A;  1W9M A;  3G9G A;  1DKY A;  3CVR A;  3BUQ A;  2NUF A;  3D2E A;  4KIK A;  3ER9 B;  1I4T A;  3T49 A;  1O7D B;  1R34 A;  3M3W A;  1ZYL A;  2FIC A;  3DYT A;  1QX1 A;  4AZC B;  2Q13 A;  3SYV A;  5C5B B;  4WPC A;  1E2U A;  3D52 A;  5E84 A;  1LQ7 A;  1SU8 A;  1I49 A;  2FFL A;  1Y2O A;  1R33 A;  4PO2 A;  4R5L A;  1YYK A;  2YLA A;  1DKZ A;  3BVW A;  3RPM A;  4EZU A;  4JL9 A;  2F7P A;  2ZXQ A;  1U61 A;  4WPE A;  3OK8 A;  3CZS A;  3B51 X;  4IWP A;  3I01 A;  2YI8 A;  4JWE A;  3BVT A;  3FD9 A;  3T4A G;  1TQS A;  5FIG A;  3GI7 A;  3ZED A;  3DPO A;  3BLB A;  3DPQ A;  3CV5 A;  3O2R B;  3A98 A;  3EJU A;  3OHX M;  2NCZ A;  2X3V A;  3RV1 A;  1UPX A;  3O2R A;  3BUP A;  3O3O B;  1JFZ A;  4FZO A;  2O0I 1;  4IM0 A;  4AZ6 A;  4NPH A;  3C4B A;  4JWI A;  2F1A A;  2JNS A;  3L3P A;  3VKH A;  2YIB A;  2F18 A;  2N3K A;  4EZW A;  4B9Q A;  1YWM A;  2EZ6 A;  2RAI A;  4HYB A;  3C4T A;  2ND0 A;  1HWW A;  3DX0 A;  4AVM A;  2Z0V A;  3DX1 A;  4I1Q A;  1QWN A;  2QKW A;  2OW6 A;  1YYW A;  4AZ7 A;  3EJP A;  2F7Q A;  2OO2 A;  1YZ9 A;  2LXY A;  4IM3 A;  4R5G A;  2X3W A;  2RAK A;  3BUI A;  4OOG C;  4JLC A;  4EZS A;  2ND1 A;  2WIN M;  2YIV X;  3O3N B;  4HY9 A;  3HAH A;  1HXK A;  4JNE A;  3N3W A;  2YL9 A;  3QE6 A;  4OUN A;  4AZH A;  1ZWW A;  2C08 A;  4EZV A;  3D51 A;  4JNF A;  2EWF A;  4H6H A;  3QNI A;  3D2F A;  4AZC A;  1GN9 A;  2WYI A;  5C5B A;  2YL6 A;  2F7R A;  4IM2 A;  2X5C A;  1O0W A;  3CZN A;  1TQV A;  4EZO A;  4NQI A;  3VEA A;  3SOG A;  1GNT A;  1URU A;  4AKV A;  5KBP A;  3UIT A;  3QWE A;  2QXL A;  1I4L A;  4IWQ A;  1HTY A;  3DDG A;  3LLL A;  2OBL A;  2Z0N A;  3EJQ A;  2KHO A;  3O3M B;  2GA9 D;  1I4D A;  2YLL A;  2YL5 A;  3T46 A;  2A11 A;  1WDZ A;  1TQU A;  2V0O A;  4EZN A;  3CKD A;  1X03 A;  1JQK A;  1E9V A;  1SUF A;  3RV0 A;  3LVT A;  3L3O M;  1I4S A;  2D4C A;  3BVV A;  4JWC A;  1RC7 A;  3LMF A;  2FYV A;  3QA8 A;  2PY6 A;  2EFK A;  4R5K A;  4EZZ A;  2GF4 A;  1PS3 A;  2QFF A;  4AZ5 A;  4HR1 B;  4AZB A;  1R5E A;  1OA0 A;  3I39 X;  4G6Q A;  4IWO A;  3ABH A;  4EZX A;  2YI9 A;  3BUD A;  3T48 A;  4UDX X;  4AZG A;  4R5J A;  2OW7 A;  2Z8Y A;  1ZTD A;  1YYO A;  4EZQ A;  1QWU A;  2X3X A;  3KAV A;  3I2W A;  2YIA A;  1O7D C;  4EZT A;  2NUG A;  4KIK B;  3PLT A;  2GAF D;  1SU6 A;  1E1D A;  1OA1 A;  4ATM A;  4NSW A;  3QNJ A;  1TQW A;  3EJT A;  3B53 X;  2EB1 A;  2Z0O A;  4M0M A;  3KAW A;  3DX2 A;  3ERC C;  2RAJ A;  4BNE A;  4AZI A;  1X04 A;  3EJR A;  3DX3 A;  4JN4 A;  1GNL A;  5FLE X;  4F01 A;  1U00 A;  4E81 A;  2MI7 A;  4M30 A;  2WYH A;  4E3C A;  3F7W A;  2GSL A;  1DKX A;  4IW0 A;  2QVW A; 
#chains in the Genus database with same CATH homology
 2EZ6 A;  4JWC A;  1ZYL A;  3DPP A;  4UDY X;  1RC7 A;  3C7N A;  3LMF A;  4HYB A;  3C4T A;  2ND0 A;  1OAO A;  3QA8 A;  2PY6 A;  4M2Z A;  1E2U A;  5E84 A;  1SU8 A;  4F00 A;  4D8J A;  4R5K A;  4EZZ A;  3T47 A;  2FFL A;  2QFF A;  1YYW A;  4HR1 B;  4PO2 A;  1OA0 A;  4R5L A;  3I39 X;  3I04 A;  4G6Q A;  4IWO A;  1YYK A;  1YZ9 A;  4EZR A;  4IM3 A;  4R5G A;  4EZX A;  2YI9 A;  4OOG C;  4JWD A;  3T48 A;  1DKZ A;  4JLC A;  4R5I A;  4UDX X;  4R5J A;  4EZS A;  2ND1 A;  2WIN M;  2YIV X;  3O3N B;  4HY9 A;  4JL9 A;  4EZU A;  4JNE A;  3N3W A;  2NUE A;  2Z8Y A;  4OUN A;  1U61 A;  1YYO A;  4EZQ A;  4EZV A;  4JNF A;  2EWF A;  3KAV A;  4H6H A;  2YIA A;  3D2F A;  1MJG A;  3B51 X;  1GN9 A;  2EX3 B;  4IWP A;  3I01 A;  2YI8 A;  4EZT A;  4IM2 A;  4JWE A;  2NUG A;  4KIK B;  3FD9 A;  3T4A G;  2X5C A;  2GAF D;  2RT6 A;  1O0W A;  4HR1 A;  1RC5 A;  5FIG A;  1SU6 A;  5TKY A;  1E1D A;  3GI7 A;  4EZO A;  3ZED A;  3DPO A;  1OA1 A;  3VEA A;  4H6I A;  3DPQ A;  1GNT A;  3O2R B;  3B52 X;  3A98 A;  3QNJ A;  3OWG A;  1SU7 A;  3UIT A;  2QXL A;  3OHX M;  3B53 X;  4FM3 A;  4IWQ A;  3VEB A;  2NCZ A;  3ER8 C;  2EB1 A;  2OBM A;  3KDR A;  4M0M A;  3KAW A;  3RV1 A;  2LM0 A;  2OBL A;  4EZY A;  1UPX A;  3O2R A;  3ERC C;  3O3O B;  2KHO A;  1JFZ A;  3O3M B;  4EZP A;  2GA9 D;  1W9M A;  1DKY A;  3T46 A;  2A11 A;  4IM0 A;  4JN4 A;  1GNL A;  5FLE X;  4NPH A;  4F01 A;  1U00 A;  4E81 A;  3C4B A;  4M30 A;  4JWI A;  4EZN A;  1JQK A;  1E9V A;  1SUF A;  3RV0 A;  2NUF A;  2JNS A;  3D2E A;  1I4S A;  3L3O M;  4KIK A;  3VKH A;  4E3C A;  3F7W A;  3ER9 B;  2YIB A;  2N3K A;  2GSL A;  4EZW A;  1DKX A;  4IW0 A;  4B9Q A;  3T49 A;  2QVW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...