3RYGA

128 hours neutron structure of perdeuterated rubredoxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
51
structure length
51
Chain Sequence
AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Rubredoxin
publication title Rapid visualization of hydrogen positions in protein neutron crystallographic structures.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 9
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2011-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3rygA00
1R0GA 3KYXA 1JYBA 3PZAA 1QCVA 2MS3A 1LKPA 1RWDA 1B2JA 5AI2A 1SMUA 2GMGA 5IY0A 1RDGA 2V3BB 2DSXA 4K9FA 3KYWA 2M4YA 1E8JA 8RXNA 1LKOA 1R0HA 3QVDA 4AR6A 1YV1A 6RXNA 4YWLA 1SMWA 1C09A 1S2ZA 4TPUA 3A44A 1B13A 1LTLA 1T9QA 3KYUA 1BFYA 1S24A 4AR3A 3RZ6A 1BQ9A 1RYTA 2K2DA 2PVEA 1DX8A 4POFA 4ME3A 1DVBA 7RXNA 2QL0A 3RZTA 1T9PA 3SS2A 1BQ8A 5AI3A 1CADA 1VCXA 1YK5A 4RXNA 2PVXA 1IROA 3PWFA 1YK4A 1RB9A 1RDVA 1B2OA 1S30A 2VL6A 1R0IA 1IU5A 1R0JA 4AR5A 2PYAA 3RYGA 1IU6A 1B71A 1YUZA 1LKMA 5RXNA 1H7VA 1FHMA 1IRNA 1SMMA 2KN9A 1R0FA 1T9OA 1YUXA 1QYBA 3MPSA 1BRFA 2KKDA 4AR4A 3KYVA 4YWMA 1ZRPA 2RDVA 1NNQA 4POGA 2LCQA 1CAAA 3KYYA 2HR5A 1FHHA 1BE7A
chains in the Genus database with same CATH superfamily
3M4OL 3GTGL 2V0EA 3JR7A 3LWPB 1B2JA 4X6AL 5AI2A 2GMGA 5IY0A 1RDGA 1Y1VL 3MSUA 3S1NL 2E2JL 4K9FA 2PMZP 5AN9H 1LKOA 2M6OA 3S17L 3QVDA 5H1Sc 3J7Y1 1YV1A 3RZOL 5IYCL 1S2ZA 3S16L 5IP7L 1B13A 5M3FL 1BFYA 4AI1A 3HJWB 4LHNA 1BQ9A 1TWHL 3MQKB 3H97A 2JA7L 3RZDL 5GAHc 1DVBA 1TWCL 5IYDL 1T9PA 4BXXL 2NYDA 2PSMC 1BQ8A 3SS2A 5AI3A 3HOZL 3J7Z1 4JADA 3WWLA 3LWOB 3P8BA 4BBSL 2B5ID 4AHYA 3PWFA 1OWBA 2M6PA 2NVYL 4A3EL 1RB9A 4AHWA 4A3ML 3GTLL 2A69D 5GAEc 3RYGA 2Z3QB 1TWAL 3HOXL 2E2IL 1PFYA 3HOYL 1IRNA 2ERSA 1WCML 4XGHA 1R0FA 1T9OA 3S15L 1YUXA 1VZGA 1TWFL 1R9TL 3M3YL 2JI3A 2CKCA 4LHLA 2CR8A 2RFKB 1CAAA 1TWGL 2C6AA 2HR5A 3FDJA 5M5WL 1NXEA 4ZN3B 2E2HL 3KYXA 1JYBA 5K2ME 2R92L 4U671 1RWDA 4A3GL 2A6ED 4AI3A 1SMUA 1Y1WL 5DM71 3LWVB 5EINC 4JAFA 3B08B 3VPBE 4JAEA 5M5YL 3S2HL 2AQCA 4A93L 1R0HA 2JA6L 3A44A 3NFPI 4Y7NL 1LTLA 1T9QA 3PO3L 2NVXL 3H3VM 1P7PA 4XXBB 2B63L 1RYTA 1VZIA 1DX8A 3LWQB 3K35A 4A3JL 4B8CD 3RZTA 5GADc 4RXNA 1IROA 1I50L 2XJPA 1WJVA 3ZG6A 2WB1P 5C4JL 1YK4A 1RDVA 3S1QL 3PL5A 4ZN1B 2VL6A 4A3IL 1IU5A 2JA8L 3B0AB 3S1ML 5C3EL 2NVTL 1IU6A 4AHZA 5MF6A 1FHMA 2XJQA 2KN9A 3IU3I 3KYVA 4YWMA 4GS7D 2RDVA 2JA5L 3QQCE 4A3FL 3KYYA 1BE7A 1OWCA 1QCVA 4AHXA 2R93L 2AYJA 5DM61 4JAGA 4C3IL 3PIO1 1IW7D 2V3BB 4A3DL 2DSXA 2WAQP 5M3ML 2M4YA 1E8JA 8RXNA 5MGNA 4AR6A 1SMWA 5GAGc 4A3KL 4TPUA 2A68D 3KYUA 2BE5D 1S24A 4AR3A 1I6HL 3RZ6A 4UY81 5EIOC 2J9UB 2XJTA 2A6HD 3I4ML 3FKIL 4Y52L 2PVEA 4POFA 4ME3A 7RXNA 3GTKL 2CKAA 3HOWL 3HOUL 3LNLA 5JVH1 3S14L 2PVXA 3PO2L 3H9BA 2XJSA 5FJ8L 1B2OA 3S1RL 4V196 1S30A 5IYBL 1R0JA 2EY4E 3PKJA 4WFN1 1NXGA 1VZHA 2NVQL 3WWNB 1K83L 2JI1A 3HKZP 3S2DL 3MPSA 5IP9L 4AI2A 1BRFA 2KKDA 4AR4A 2C6BA 2Z3RB 4BBRL 1ZRPA 2JI2A 3I4NL 1NNQA 4C2M1 2XJRA 1QQTA 3PKIA 2ERJA 1R0GA 3HOVL 1PFWA 3PZAA 2AUSB 1F4LA 2MS3A 5C4XL 1LKPA 5MFZA 5FLML 2H12A 2ZIXA 2Y0SP 2M4VA 3H99A 3KYWA 3GTJL 2VUML 5M5XL 4A3CL 1ODHA 6RXNA 4E6YA 4YWLA 1RYQA 1C09A 2R7ZL 3H0GL 3HJYB 4TVMA 3K7AL 2V0FA 1PFUA 3GTQL 4AI0A 2L0ZA 2K2DA 2QL0A 3LPEB 1CADA 1VCXA 1YK5A 5C44L 3LWRB 4A3LL 1SFOL 1I3QL 1PZXA 4AYBP 3GTOL 4C3JL 3P2AA 4G6BA 3GTPL 1R0IA 5JVG1 4AR5A 2PYAA 3CQZL 2HVYC 4BY7L 2APOB 1B71A 1YUZA 1LKMA 5RXNA 2O5JD 1SMMA 1H7VA 3PIP1 1QYBA 4BY1L 5MLC3 4C3HL 3H9CA 1PFVA 2XJVA 4POGA 2YU9L 4A3BL 2LCQA 4QIWP 3GTML 1Z92B 5MFPA 1FHHA 2XJUA 3HAXC 2PPTA
chains in the Genus database with same CATH topology
1R0GA 2V0EA 1NXEA 4ZN3B 3KYXA 1JYBA 1OWCA 3PZAA 1QCVA 4AHXA 5K2ME 2MS3A 2AYJA 1LKPA 5MFZA 4U671 5DM61 1RWDA 4JAGA 1B2JA 2A6ED 5AI2A 4AI3A 1SMUA 2GMGA 1IW7D 2H12A 1RDGA 2V3BB 2ZIXA 5IY0A 5DM71 3PIO1 3MSUA 2DSXA 5EINC 4JAFA 2M4VA 3B08B 4K9FA 4JAEA 3VPBE 3KYWA 2M4YA 1E8JA 5AN9H 8RXNA 1LKOA 2M6OA 1R0HA 3QVDA 4AR6A 5MGNA 5H1Sc 3J7Y1 1YV1A 1ODHA 6RXNA 4E6YA 4YWLA 1SMWA 5GAGc 1RYQA 1C09A 1S2ZA 2PPTA 3A44A 4TPUA 3NFPI 4TVMA 1B13A 2A68D 1LTLA 1T9QA 3KYUA 1BFYA 2BE5D 1S24A 4AI1A 4AR3A 2V0FA 4XXBB 3RZ6A 4LHNA 1BQ9A 2J9UB 4AI0A 5EIOC 4UY81 2XJTA 2A6HD 1RYTA 2L0ZA 2K2DA 2PVEA 1VZIA 1DX8A 4POFA 5GAHc 4ME3A 1DVBA 3K35A 7RXNA 2CKAA 2QL0A 3LNLA 4B8CD 1T9PA 3RZTA 1H7VA 5JVH1 3LPEB 2NYDA 2PSMC 1BQ8A 3SS2A 5AI3A 1CADA 1VCXA 1YK5A 4RXNA 5GADc 2PVXA 1IROA 3J7Z1 4JADA 2XJPA 3WWLA 1WJVA 3ZG6A 2XJSA 3P8BA 2B5ID 4AHYA 3PWFA 1OWBA 1YK4A 2M6PA 1RB9A 4AHWA 1RDVA 1B2OA 3P2AA 4V196 1S30A 4G6BA 4ZN1B 2VL6A 1R0IA 5JVG1 1IU5A 1R0JA 4AR5A 2PYAA 3PKJA 3B0AB 4WFN1 1NXGA 1VZHA 2A69D 5GAEc 3RYGA 1IU6A 2Z3QB 1B71A 1YUZA 1LKMA 3WWNB 4AHZA 2JI1A 5RXNA 2O5JD 1FHMA 1IRNA 1SMMA 2ERSA 2KN9A 2XJQA 4XGHA 1R0FA 1T9OA 5MF6A 1YUXA 3PIP1 1QYBA 3MPSA 3IU3I 4AI2A 1BRFA 2KKDA 4AR4A 3KYVA 2C6BA 4YWMA 2Z3RB 5MLC3 1VZGA 1ZRPA 2JI2A 4GS7D 2RDVA 2JI3A 1NNQA 2XJVA 4POGA 2CKCA 3QQCE 4LHLA 2CR8A 2LCQA 2XJRA 3PKIA 1CAAA 1Z92B 2C6AA 3KYYA 2HR5A 1FHHA 1BE7A 5MFPA 2XJUA 2ERJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R0G A;  3KYX A;  1JYB A;  3PZA A;  1QCV A;  2MS3 A;  1LKP A;  1RWD A;  1B2J A;  5AI2 A;  1SMU A;  2GMG A;  5IY0 A;  1RDG A;  2V3B B;  2DSX A;  4K9F A;  3KYW A;  2M4Y A;  1E8J A;  8RXN A;  1LKO A;  1R0H A;  3QVD A;  4AR6 A;  1YV1 A;  6RXN A;  4YWL A;  1SMW A;  1C09 A;  1S2Z A;  4TPU A;  3A44 A;  1B13 A;  1LTL A;  1T9Q A;  3KYU A;  1BFY A;  1S24 A;  4AR3 A;  3RZ6 A;  1BQ9 A;  1RYT A;  2K2D A;  2PVE A;  1DX8 A;  4POF A;  4ME3 A;  1DVB A;  7RXN A;  2QL0 A;  3RZT A;  1T9P A;  3SS2 A;  1BQ8 A;  5AI3 A;  1CAD A;  1VCX A;  1YK5 A;  4RXN A;  2PVX A;  1IRO A;  3PWF A;  1YK4 A;  1RB9 A;  1RDV A;  1B2O A;  1S30 A;  2VL6 A;  1R0I A;  1IU5 A;  1R0J A;  4AR5 A;  2PYA A;  3RYG A;  1IU6 A;  1B71 A;  1YUZ A;  1LKM A;  5RXN A;  1H7V A;  1FHM A;  1IRN A;  1SMM A;  2KN9 A;  1R0F A;  1T9O A;  1YUX A;  1QYB A;  3MPS A;  1BRF A;  2KKD A;  4AR4 A;  3KYV A;  4YWM A;  1ZRP A;  2RDV A;  1NNQ A;  4POG A;  2LCQ A;  1CAA A;  3KYY A;  2HR5 A;  1FHH A;  1BE7 A; 
#chains in the Genus database with same CATH topology
 3M4O L;  3GTG L;  2V0E A;  3JR7 A;  3LWP B;  1B2J A;  4X6A L;  5AI2 A;  2GMG A;  5IY0 A;  1RDG A;  1Y1V L;  3MSU A;  3S1N L;  2E2J L;  4K9F A;  2PMZ P;  5AN9 H;  1LKO A;  2M6O A;  3S17 L;  3QVD A;  5H1S c;  3J7Y 1;  1YV1 A;  3RZO L;  5IYC L;  1S2Z A;  3S16 L;  5IP7 L;  1B13 A;  5M3F L;  1BFY A;  4AI1 A;  3HJW B;  4LHN A;  1BQ9 A;  1TWH L;  3MQK B;  3H97 A;  2JA7 L;  3RZD L;  5GAH c;  1DVB A;  1TWC L;  5IYD L;  1T9P A;  4BXX L;  2NYD A;  2PSM C;  1BQ8 A;  3SS2 A;  5AI3 A;  3HOZ L;  3J7Z 1;  4JAD A;  3WWL A;  3LWO B;  3P8B A;  4BBS L;  2B5I D;  4AHY A;  3PWF A;  1OWB A;  2M6P A;  2NVY L;  4A3E L;  1RB9 A;  4AHW A;  4A3M L;  3GTL L;  2A69 D;  5GAE c;  3RYG A;  2Z3Q B;  1TWA L;  3HOX L;  2E2I L;  1PFY A;  3HOY L;  1IRN A;  2ERS A;  1WCM L;  4XGH A;  1R0F A;  1T9O A;  3S15 L;  1YUX A;  1VZG A;  1TWF L;  1R9T L;  3M3Y L;  2JI3 A;  2CKC A;  4LHL A;  2CR8 A;  2RFK B;  1CAA A;  1TWG L;  2C6A A;  2HR5 A;  3FDJ A;  5M5W L;  1NXE A;  4ZN3 B;  2E2H L;  3KYX A;  1JYB A;  5K2M E;  2R92 L;  4U67 1;  1RWD A;  4A3G L;  2A6E D;  4AI3 A;  1SMU A;  1Y1W L;  5DM7 1;  3LWV B;  5EIN C;  4JAF A;  3B08 B;  3VPB E;  4JAE A;  5M5Y L;  3S2H L;  2AQC A;  4A93 L;  1R0H A;  2JA6 L;  3A44 A;  3NFP I;  4Y7N L;  1LTL A;  1T9Q A;  3PO3 L;  2NVX L;  3H3V M;  1P7P A;  4XXB B;  2B63 L;  1RYT A;  1VZI A;  1DX8 A;  3LWQ B;  3K35 A;  4A3J L;  4B8C D;  3RZT A;  5GAD c;  4RXN A;  1IRO A;  1I50 L;  2XJP A;  1WJV A;  3ZG6 A;  2WB1 P;  5C4J L;  1YK4 A;  1RDV A;  3S1Q L;  3PL5 A;  4ZN1 B;  2VL6 A;  4A3I L;  1IU5 A;  2JA8 L;  3B0A B;  3S1M L;  5C3E L;  2NVT L;  1IU6 A;  4AHZ A;  5MF6 A;  1FHM A;  2XJQ A;  2KN9 A;  3IU3 I;  3KYV A;  4YWM A;  4GS7 D;  2RDV A;  2JA5 L;  3QQC E;  4A3F L;  3KYY A;  1BE7 A;  1OWC A;  1QCV A;  4AHX A;  2R93 L;  2AYJ A;  5DM6 1;  4JAG A;  4C3I L;  3PIO 1;  1IW7 D;  2V3B B;  4A3D L;  2DSX A;  2WAQ P;  5M3M L;  2M4Y A;  1E8J A;  8RXN A;  5MGN A;  4AR6 A;  1SMW A;  5GAG c;  4A3K L;  4TPU A;  2A68 D;  3KYU A;  2BE5 D;  1S24 A;  4AR3 A;  1I6H L;  3RZ6 A;  4UY8 1;  5EIO C;  2J9U B;  2XJT A;  2A6H D;  3I4M L;  3FKI L;  4Y52 L;  2PVE A;  4POF A;  4ME3 A;  7RXN A;  3GTK L;  2CKA A;  3HOW L;  3HOU L;  3LNL A;  5JVH 1;  3S14 L;  2PVX A;  3PO2 L;  3H9B A;  2XJS A;  5FJ8 L;  1B2O A;  3S1R L;  4V19 6;  1S30 A;  5IYB L;  1R0J A;  2EY4 E;  3PKJ A;  4WFN 1;  1NXG A;  1VZH A;  2NVQ L;  3WWN B;  1K83 L;  2JI1 A;  3HKZ P;  3S2D L;  3MPS A;  5IP9 L;  4AI2 A;  1BRF A;  2KKD A;  4AR4 A;  2C6B A;  2Z3R B;  4BBR L;  1ZRP A;  2JI2 A;  3I4N L;  1NNQ A;  4C2M 1;  2XJR A;  1QQT A;  3PKI A;  2ERJ A;  1R0G A;  3HOV L;  1PFW A;  3PZA A;  2AUS B;  1F4L A;  2MS3 A;  5C4X L;  1LKP A;  5MFZ A;  5FLM L;  2H12 A;  2ZIX A;  2Y0S P;  2M4V A;  3H99 A;  3KYW A;  3GTJ L;  2VUM L;  5M5X L;  4A3C L;  1ODH A;  6RXN A;  4E6Y A;  4YWL A;  1RYQ A;  1C09 A;  2R7Z L;  3H0G L;  3HJY B;  4TVM A;  3K7A L;  2V0F A;  1PFU A;  3GTQ L;  4AI0 A;  2L0Z A;  2K2D A;  2QL0 A;  3LPE B;  1CAD A;  1VCX A;  1YK5 A;  5C44 L;  3LWR B;  4A3L L;  1SFO L;  1I3Q L;  1PZX A;  4AYB P;  3GTO L;  4C3J L;  3P2A A;  4G6B A;  3GTP L;  1R0I A;  5JVG 1;  4AR5 A;  2PYA A;  3CQZ L;  2HVY C;  4BY7 L;  2APO B;  1B71 A;  1YUZ A;  1LKM A;  5RXN A;  2O5J D;  1SMM A;  1H7V A;  3PIP 1;  1QYB A;  4BY1 L;  5MLC 3;  4C3H L;  3H9C A;  1PFV A;  2XJV A;  4POG A;  2YU9 L;  4A3B L;  2LCQ A;  4QIW P;  3GTM L;  1Z92 B;  5MFP A;  1FHH A;  2XJU A;  3HAX C;  2PPT A; 
#chains in the Genus database with same CATH homology
 1R0G A;  2V0E A;  1NXE A;  4ZN3 B;  3KYX A;  1JYB A;  1OWC A;  3PZA A;  1QCV A;  4AHX A;  5K2M E;  2MS3 A;  2AYJ A;  1LKP A;  5MFZ A;  4U67 1;  5DM6 1;  1RWD A;  4JAG A;  1B2J A;  2A6E D;  5AI2 A;  4AI3 A;  1SMU A;  2GMG A;  1IW7 D;  2H12 A;  1RDG A;  2V3B B;  2ZIX A;  5IY0 A;  5DM7 1;  3PIO 1;  3MSU A;  2DSX A;  5EIN C;  4JAF A;  2M4V A;  3B08 B;  4K9F A;  4JAE A;  3VPB E;  3KYW A;  2M4Y A;  1E8J A;  5AN9 H;  8RXN A;  1LKO A;  2M6O A;  1R0H A;  3QVD A;  4AR6 A;  5MGN A;  5H1S c;  3J7Y 1;  1YV1 A;  1ODH A;  6RXN A;  4E6Y A;  4YWL A;  1SMW A;  5GAG c;  1RYQ A;  1C09 A;  1S2Z A;  2PPT A;  3A44 A;  4TPU A;  3NFP I;  4TVM A;  1B13 A;  2A68 D;  1LTL A;  1T9Q A;  3KYU A;  1BFY A;  2BE5 D;  1S24 A;  4AI1 A;  4AR3 A;  2V0F A;  4XXB B;  3RZ6 A;  4LHN A;  1BQ9 A;  2J9U B;  4AI0 A;  5EIO C;  4UY8 1;  2XJT A;  2A6H D;  1RYT A;  2L0Z A;  2K2D A;  2PVE A;  1VZI A;  1DX8 A;  4POF A;  5GAH c;  4ME3 A;  1DVB A;  3K35 A;  7RXN A;  2CKA A;  2QL0 A;  3LNL A;  4B8C D;  1T9P A;  3RZT A;  1H7V A;  5JVH 1;  3LPE B;  2NYD A;  2PSM C;  1BQ8 A;  3SS2 A;  5AI3 A;  1CAD A;  1VCX A;  1YK5 A;  4RXN A;  5GAD c;  2PVX A;  1IRO A;  3J7Z 1;  4JAD A;  2XJP A;  3WWL A;  1WJV A;  3ZG6 A;  2XJS A;  3P8B A;  2B5I D;  4AHY A;  3PWF A;  1OWB A;  1YK4 A;  2M6P A;  1RB9 A;  4AHW A;  1RDV A;  1B2O A;  3P2A A;  4V19 6;  1S30 A;  4G6B A;  4ZN1 B;  2VL6 A;  1R0I A;  5JVG 1;  1IU5 A;  1R0J A;  4AR5 A;  2PYA A;  3PKJ A;  3B0A B;  4WFN 1;  1NXG A;  1VZH A;  2A69 D;  5GAE c;  3RYG A;  1IU6 A;  2Z3Q B;  1B71 A;  1YUZ A;  1LKM A;  3WWN B;  4AHZ A;  2JI1 A;  5RXN A;  2O5J D;  1FHM A;  1IRN A;  1SMM A;  2ERS A;  2KN9 A;  2XJQ A;  4XGH A;  1R0F A;  1T9O A;  5MF6 A;  1YUX A;  3PIP 1;  1QYB A;  3MPS A;  3IU3 I;  4AI2 A;  1BRF A;  2KKD A;  4AR4 A;  3KYV A;  2C6B A;  4YWM A;  2Z3R B;  5MLC 3;  1VZG A;  1ZRP A;  2JI2 A;  4GS7 D;  2RDV A;  2JI3 A;  1NNQ A;  2XJV A;  4POG A;  2CKC A;  3QQC E;  4LHL A;  2CR8 A;  2LCQ A;  2XJR A;  3PKI A;  1CAA A;  1Z92 B;  2C6A A;  3KYY A;  2HR5 A;  1FHH A;  1BE7 A;  5MFP A;  2XJU A;  2ERJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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