3RZPA

Crystal structure of the c194a mutant of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae complexed with preq1
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
259
structure length
254
Chain Sequence
NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADPH-dependent 7-cyano-7-deazaguanine reductase
publication title Crystal Structure of the C194A mutant of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with preQ1
rcsb
source organism Vibrio cholerae
total genus 84
structure length 254
sequence length 259
chains with identical sequence B, C, D
ec nomenclature ec 1.7.1.13: PreQ(1) synthase.
pdb deposition date 2011-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14489 QueF QueF-like protein
A PF14819 QueF_N Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 3rzpA02
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 3rzpA01
1DHNA 2NM2A 3R2EA 1NBUA 2DHNA 4GHMA 5FARA 1FB1A 1NBUC 2O90A 1Z9WA 1WURA 3UXVA 3S19A 3BP1A 4F8BA 4FGCA 1A8RA 3RJ4A 4UQFA 1RS4A 1IS8A 3O1KA 1N3TA 1WUQA 1RSDA 1SQLA 3RZPA 3V9OA 1FBXA 5F3MA 1N3RA 1RRIA 1NBUB 1U68A 1RS2A 1IS7A 1RRYA 4DU6A 1A9CA 1B9LA 1GTPA 1RSIA 1WM9A 3UXJA 1N3SA 1RRWA 2NM3A 1WPLA 2CG8A 4AEYA 4IQIA
chains in the Genus database with same CATH superfamily
1DHNA 2NM2A 3R2EA 1NBUA 2DHNA 4GHMA 5FARA 1FB1A 1NBUC 2O90A 1Z9WA 1WURA 3UXVA 3S19A 3BP1A 4F8BA 4FGCA 1A8RA 3RJ4A 4UQFA 1RS4A 1IS8A 3O1KA 1N3TA 1WUQA 1RSDA 1SQLA 3RZPA 3V9OA 1FBXA 5F3MA 1N3RA 1RRIA 1NBUB 1U68A 1RS2A 1IS7A 1RRYA 4DU6A 1A9CA 1B9LA 1GTPA 1RSIA 1WM9A 3UXJA 1N3SA 1RRWA 2NM3A 1WPLA 2CG8A 4AEYA 4IQIA
chains in the Genus database with same CATH topology
1DHNA 2NM2A 3R2EA 1NBUA 2DHNA 4GHMA 5FARA 1FB1A 1NBUC 2O90A 1Z9WA 1WURA 3UXVA 3S19A 3BP1A 4F8BA 4FGCA 1A8RA 3RJ4A 4UQFA 1RS4A 1IS8A 3O1KA 1N3TA 1WUQA 1RSDA 1SQLA 3RZPA 3V9OA 1FBXA 5F3MA 1N3RA 1RRIA 1NBUB 1U68A 1RS2A 1IS7A 1RRYA 4DU6A 1A9CA 1B9LA 1GTPA 1RSIA 1WM9A 3UXJA 1N3SA 1RRWA 2NM3A 1WPLA 2CG8A 4AEYA 4IQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DHN A;  2NM2 A;  3R2E A;  1NBU A;  2DHN A;  4GHM A;  5FAR A;  1FB1 A;  1NBU C;  2O90 A;  1Z9W A;  1WUR A;  3UXV A;  3S19 A;  3BP1 A;  4F8B A;  4FGC A;  1A8R A;  3RJ4 A;  4UQF A;  1RS4 A;  1IS8 A;  3O1K A;  1N3T A;  1WUQ A;  1RSD A;  1SQL A;  3RZP A;  3V9O A;  1FBX A;  5F3M A;  1N3R A;  1RRI A;  1NBU B;  1U68 A;  1RS2 A;  1IS7 A;  1RRY A;  4DU6 A;  1A9C A;  1B9L A;  1GTP A;  1RSI A;  1WM9 A;  3UXJ A;  1N3S A;  1RRW A;  2NM3 A;  1WPL A;  2CG8 A;  4AEY A;  4IQI A; 
#chains in the Genus database with same CATH topology
 1DHN A;  2NM2 A;  3R2E A;  1NBU A;  2DHN A;  4GHM A;  5FAR A;  1FB1 A;  1NBU C;  2O90 A;  1Z9W A;  1WUR A;  3UXV A;  3S19 A;  3BP1 A;  4F8B A;  4FGC A;  1A8R A;  3RJ4 A;  4UQF A;  1RS4 A;  1IS8 A;  3O1K A;  1N3T A;  1WUQ A;  1RSD A;  1SQL A;  3RZP A;  3V9O A;  1FBX A;  5F3M A;  1N3R A;  1RRI A;  1NBU B;  1U68 A;  1RS2 A;  1IS7 A;  1RRY A;  4DU6 A;  1A9C A;  1B9L A;  1GTP A;  1RSI A;  1WM9 A;  3UXJ A;  1N3S A;  1RRW A;  2NM3 A;  1WPL A;  2CG8 A;  4AEY A;  4IQI A; 
#chains in the Genus database with same CATH homology
 1DHN A;  2NM2 A;  3R2E A;  1NBU A;  2DHN A;  4GHM A;  5FAR A;  1FB1 A;  1NBU C;  2O90 A;  1Z9W A;  1WUR A;  3UXV A;  3S19 A;  3BP1 A;  4F8B A;  4FGC A;  1A8R A;  3RJ4 A;  4UQF A;  1RS4 A;  1IS8 A;  3O1K A;  1N3T A;  1WUQ A;  1RSD A;  1SQL A;  3RZP A;  3V9O A;  1FBX A;  5F3M A;  1N3R A;  1RRI A;  1NBU B;  1U68 A;  1RS2 A;  1IS7 A;  1RRY A;  4DU6 A;  1A9C A;  1B9L A;  1GTP A;  1RSI A;  1WM9 A;  3UXJ A;  1N3S A;  1RRW A;  2NM3 A;  1WPL A;  2CG8 A;  4AEY A;  4IQI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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