The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
112
|
sequence length |
434
|
structure length |
421
|
Chain Sequence |
MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGPAAATALAEALSVEPSQLAADAHRNLTVVHKSAEEMHASRRPIQRDGIHFYNFYTLAAPEGRVAPVVLDILCPSDRLPALNNGHLEPAITVNLGPGDINGRWGEEITPQTWRVLHANHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTEANNWSTGAFEEALKALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQHDGVGKTWTTIEDSRRSRRTFGTYEAASMASAAHLPDLVGSFLRVDDLIDHAENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTGTVLKFGSGAHLGYQDWLELTNTFEPAATLRRGRR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mechanism and substrate recognition of 2-hydroxyethylphosphonate dioxygenase.
pubmed doi rcsb |
| molecule keywords |
Hydroxyethylphoshphonate Dioxygenase (PhpD)
|
| source organism |
Streptomyces viridochromogenes
|
| molecule tags |
Oxidoreductase
|
| total genus |
112
|
| structure length |
421
|
| sequence length |
434
|
| ec nomenclature |
ec
1.13.11.72: 2-hydroxyethylphosphonate dioxygenase. |
| pdb deposition date | 2011-05-12 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | lambda repressor-like DNA-binding domains | ||
| Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | lambda repressor-like DNA-binding domains | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
