3S1BV

The development of peptide-based tools for the analysis of angiogenesis
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
96
structure length
96
Chain Sequence
HEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Vascular endothelial growth factor A
publication title The development of Peptide-based tools for the analysis of angiogenesis.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2011-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF00341 PDGF PDGF/VEGF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3s1bV00
1BJ1V 2TGIA 2XACA 1SG1A 1FL7A 1FL7B 1QFWA 1QFWB 1M4UL 4FAOA 1TFGA 4GLSE 4EDXV 3MJGA 2XV7A 4UHZA 1M4UA 2GH0C 1BTGA 1TZIV 1MKKA 1BNDB 1BNDA 3BDYV 1FLTV 1CZ8V 1VPFA 3JVFA 3RJRA 2PJYA 1NYUB 1XWDA 1XWDB 1KTZA 4KZNA 1HCNB 4UI1A 3FUBB 2GYZA 1BETA 1TGKA 2FJGV 5BQ8B 4EC7A 5BQ8A 3V2AA 5HHDA 4QAFC 1E9JA 3QTKA 1HD4A 2QJ9A 1S4YB 3EVSB 2GOOA 5HHVA 5BQEB 3QB4A 1B98A 1B8KA 1KATW 4ZFFC 2VPFA 3IJ2A 4ZBNA 4UI0A 5HK5E 4KXZA 4LXRJ 1VPPV 5HI4A 4MQWB 4MQWA 5AEJA 1WQ8A 5E4GA 4XPJA 2ASKA 3HH2A 1ZKZA 2P6AA 4LXSJ 3E07A 3S1BV 2C7WA 4YCIC 3SEKB 1RV6V 2H64A 1HCNA 2QJAA 2B0UA 4EFVA 1WQ9B 2QCQA 2KD3A 2ARVA 3KFDA 5FV1V 2GYRA 5F3BC 1NYSB 2FJHV 3BMPA 4QHUC 5BQEA 4HSAA 2H62A 3V6BA 2X1XE 1ES7A 4YCGC 5BQCA 2VWEA 4HR9A 2R52A 3B4VA 1JPYA 1QTYR 5HI3A 1PDGA 4KV5A 1REUA 1MJVA 3S1KV 2VXSA 1REWA 5HK5A 1SGFB 2QJBA 4MPLA 2BHKA 2X1WA 5FV2V 5HHXA 5BQ8D 2IFGE 1WWWV 5F3HI 1DZ7A 3BK3A 5HHCA 1FZVA 4UHYA 1WQ9A 4AY9B 4AY9A 1KLAA 5JZ7A 1KLCA 3MJKA 2QCWA 3P9WA 4EAXA 3EO1C 1WAQA 1BMPA 1B8MA 1B8MB 3BUKA 4X1JA 1AOCA 2QR0C 1TGJA 1HRPA 1HRPB 5BQBA 4HQUA 4GLNE 1LXIA 4WPBA 1HCFA 2R53A 2V5EB 4QCIC 4HQXA 4UI2B 4MIDA 5HI5A 1AGQA 4N1DA 1NT3A 1TZHV 4EDWV 1MKGA 5BPUA 1LX5A 2GNNA 4BV4L 2ARPA
chains in the Genus database with same CATH superfamily
1BJ1V 2TGIA 2XACA 1SG1A 1FL7A 1FL7B 1QFWA 1QFWB 1M4UL 4FAOA 1TFGA 4GLSE 4EDXV 3MJGA 2XV7A 4UHZA 1M4UA 2GH0C 1BTGA 1TZIV 1MKKA 1BNDB 1BNDA 3BDYV 1FLTV 1CZ8V 1VPFA 3JVFA 3RJRA 2PJYA 1NYUB 1XWDA 1XWDB 1KTZA 4KZNA 1HCNB 4UI1A 3FUBB 2GYZA 1BETA 1TGKA 2FJGV 5BQ8B 4EC7A 5BQ8A 3V2AA 5HHDA 4QAFC 1E9JA 3QTKA 1HD4A 2QJ9A 1S4YB 3EVSB 2GOOA 5HHVA 5BQEB 3QB4A 1B98A 1B8KA 1KATW 4ZFFC 2VPFA 3IJ2A 4ZBNA 4UI0A 5HK5E 4KXZA 4LXRJ 1VPPV 5HI4A 4MQWB 4MQWA 5AEJA 1WQ8A 5E4GA 4XPJA 2ASKA 3HH2A 1ZKZA 2P6AA 4LXSJ 3E07A 3S1BV 2C7WA 4YCIC 3SEKB 1RV6V 2H64A 1HCNA 2QJAA 2B0UA 4EFVA 1WQ9B 2QCQA 2KD3A 2ARVA 3KFDA 5FV1V 2GYRA 5F3BC 1NYSB 2FJHV 3BMPA 4QHUC 5BQEA 4HSAA 2H62A 3V6BA 2X1XE 1ES7A 4YCGC 5BQCA 2VWEA 4HR9A 2R52A 3B4VA 1JPYA 1QTYR 5HI3A 1PDGA 4KV5A 1REUA 1MJVA 3S1KV 2VXSA 1REWA 5HK5A 1SGFB 2QJBA 4MPLA 2BHKA 2X1WA 5FV2V 5HHXA 5BQ8D 2IFGE 1WWWV 5F3HI 1DZ7A 3BK3A 5HHCA 1FZVA 4UHYA 1WQ9A 4AY9B 4AY9A 1KLAA 5JZ7A 1KLCA 3MJKA 2QCWA 3P9WA 4EAXA 3EO1C 1WAQA 1BMPA 1B8MA 1B8MB 3BUKA 4X1JA 1AOCA 2QR0C 1TGJA 1HRPA 1HRPB 5BQBA 4HQUA 4GLNE 1LXIA 4WPBA 1HCFA 2R53A 2V5EB 4QCIC 4HQXA 4UI2B 4MIDA 5HI5A 1AGQA 4N1DA 1NT3A 1TZHV 4EDWV 1MKGA 5BPUA 1LX5A 2GNNA 4BV4L 2ARPA
chains in the Genus database with same CATH topology
1BJ1V 2TGIA 2XACA 1SG1A 1FL7A 1FL7B 1QFWA 1QFWB 1M4UL 4FAOA 1TFGA 4GLSE 4EDXV 3MJGA 2XV7A 4UHZA 1M4UA 2GH0C 1BTGA 1TZIV 1MKKA 1BNDB 1BNDA 3BDYV 1FLTV 1CZ8V 1VPFA 3JVFA 3RJRA 2PJYA 1NYUB 1XWDA 1XWDB 1KTZA 4KZNA 1HCNB 4UI1A 3FUBB 2GYZA 1BETA 1TGKA 2FJGV 5BQ8B 4EC7A 5BQ8A 3V2AA 5HHDA 4QAFC 1E9JA 3QTKA 1HD4A 2QJ9A 1S4YB 3EVSB 2GOOA 5HHVA 5BQEB 3QB4A 1B98A 1B8KA 1KATW 4ZFFC 2VPFA 3IJ2A 4ZBNA 4UI0A 5HK5E 4KXZA 4LXRJ 1VPPV 5HI4A 4MQWB 4MQWA 5AEJA 1WQ8A 5E4GA 4XPJA 2ASKA 3HH2A 1ZKZA 2P6AA 4LXSJ 3E07A 3S1BV 2C7WA 4YCIC 3SEKB 1RV6V 2H64A 1HCNA 2QJAA 2B0UA 4EFVA 1WQ9B 2QCQA 2KD3A 2ARVA 3KFDA 5FV1V 2GYRA 5F3BC 1NYSB 2FJHV 3BMPA 4QHUC 5BQEA 4HSAA 2H62A 3V6BA 2X1XE 1ES7A 4YCGC 5BQCA 2VWEA 4HR9A 2R52A 3B4VA 1JPYA 1QTYR 5HI3A 1PDGA 4KV5A 1REUA 1MJVA 3S1KV 2VXSA 1REWA 5HK5A 1SGFB 2QJBA 4MPLA 2BHKA 2X1WA 5FV2V 5HHXA 5BQ8D 2IFGE 1WWWV 5F3HI 1DZ7A 3BK3A 5HHCA 1FZVA 4UHYA 1WQ9A 4AY9B 4AY9A 1KLAA 5JZ7A 1KLCA 3MJKA 2QCWA 3P9WA 4EAXA 3EO1C 1WAQA 1BMPA 1B8MA 1B8MB 3BUKA 4X1JA 1AOCA 2QR0C 1TGJA 1HRPA 1HRPB 5BQBA 4HQUA 4GLNE 1LXIA 4WPBA 1HCFA 2R53A 2V5EB 4QCIC 4HQXA 4UI2B 4MIDA 5HI5A 1AGQA 4N1DA 1NT3A 1TZHV 4EDWV 1MKGA 5BPUA 1LX5A 2GNNA 4BV4L 2ARPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BJ1 V;  2TGI A;  2XAC A;  1SG1 A;  1FL7 A;  1FL7 B;  1QFW A;  1QFW B;  1M4U L;  4FAO A;  1TFG A;  4GLS E;  4EDX V;  3MJG A;  2XV7 A;  4UHZ A;  1M4U A;  2GH0 C;  1BTG A;  1TZI V;  1MKK A;  1BND B;  1BND A;  3BDY V;  1FLT V;  1CZ8 V;  1VPF A;  3JVF A;  3RJR A;  2PJY A;  1NYU B;  1XWD A;  1XWD B;  1KTZ A;  4KZN A;  1HCN B;  4UI1 A;  3FUB B;  2GYZ A;  1BET A;  1TGK A;  2FJG V;  5BQ8 B;  4EC7 A;  5BQ8 A;  3V2A A;  5HHD A;  4QAF C;  1E9J A;  3QTK A;  1HD4 A;  2QJ9 A;  1S4Y B;  3EVS B;  2GOO A;  5HHV A;  5BQE B;  3QB4 A;  1B98 A;  1B8K A;  1KAT W;  4ZFF C;  2VPF A;  3IJ2 A;  4ZBN A;  4UI0 A;  5HK5 E;  4KXZ A;  4LXR J;  1VPP V;  5HI4 A;  4MQW B;  4MQW A;  5AEJ A;  1WQ8 A;  5E4G A;  4XPJ A;  2ASK A;  3HH2 A;  1ZKZ A;  2P6A A;  4LXS J;  3E07 A;  3S1B V;  2C7W A;  4YCI C;  3SEK B;  1RV6 V;  2H64 A;  1HCN A;  2QJA A;  2B0U A;  4EFV A;  1WQ9 B;  2QCQ A;  2KD3 A;  2ARV A;  3KFD A;  5FV1 V;  2GYR A;  5F3B C;  1NYS B;  2FJH V;  3BMP A;  4QHU C;  5BQE A;  4HSA A;  2H62 A;  3V6B A;  2X1X E;  1ES7 A;  4YCG C;  5BQC A;  2VWE A;  4HR9 A;  2R52 A;  3B4V A;  1JPY A;  1QTY R;  5HI3 A;  1PDG A;  4KV5 A;  1REU A;  1MJV A;  3S1K V;  2VXS A;  1REW A;  5HK5 A;  1SGF B;  2QJB A;  4MPL A;  2BHK A;  2X1W A;  5FV2 V;  5HHX A;  5BQ8 D;  2IFG E;  1WWW V;  5F3H I;  1DZ7 A;  3BK3 A;  5HHC A;  1FZV A;  4UHY A;  1WQ9 A;  4AY9 B;  4AY9 A;  1KLA A;  5JZ7 A;  1KLC A;  3MJK A;  2QCW A;  3P9W A;  4EAX A;  3EO1 C;  1WAQ A;  1BMP A;  1B8M A;  1B8M B;  3BUK A;  4X1J A;  1AOC A;  2QR0 C;  1TGJ A;  1HRP A;  1HRP B;  5BQB A;  4HQU A;  4GLN E;  1LXI A;  4WPB A;  1HCF A;  2R53 A;  2V5E B;  4QCI C;  4HQX A;  4UI2 B;  4MID A;  5HI5 A;  1AGQ A;  4N1D A;  1NT3 A;  1TZH V;  4EDW V;  1MKG A;  5BPU A;  1LX5 A;  2GNN A;  4BV4 L;  2ARP A; 
#chains in the Genus database with same CATH topology
 1BJ1 V;  2TGI A;  2XAC A;  1SG1 A;  1FL7 A;  1FL7 B;  1QFW A;  1QFW B;  1M4U L;  4FAO A;  1TFG A;  4GLS E;  4EDX V;  3MJG A;  2XV7 A;  4UHZ A;  1M4U A;  2GH0 C;  1BTG A;  1TZI V;  1MKK A;  1BND B;  1BND A;  3BDY V;  1FLT V;  1CZ8 V;  1VPF A;  3JVF A;  3RJR A;  2PJY A;  1NYU B;  1XWD A;  1XWD B;  1KTZ A;  4KZN A;  1HCN B;  4UI1 A;  3FUB B;  2GYZ A;  1BET A;  1TGK A;  2FJG V;  5BQ8 B;  4EC7 A;  5BQ8 A;  3V2A A;  5HHD A;  4QAF C;  1E9J A;  3QTK A;  1HD4 A;  2QJ9 A;  1S4Y B;  3EVS B;  2GOO A;  5HHV A;  5BQE B;  3QB4 A;  1B98 A;  1B8K A;  1KAT W;  4ZFF C;  2VPF A;  3IJ2 A;  4ZBN A;  4UI0 A;  5HK5 E;  4KXZ A;  4LXR J;  1VPP V;  5HI4 A;  4MQW B;  4MQW A;  5AEJ A;  1WQ8 A;  5E4G A;  4XPJ A;  2ASK A;  3HH2 A;  1ZKZ A;  2P6A A;  4LXS J;  3E07 A;  3S1B V;  2C7W A;  4YCI C;  3SEK B;  1RV6 V;  2H64 A;  1HCN A;  2QJA A;  2B0U A;  4EFV A;  1WQ9 B;  2QCQ A;  2KD3 A;  2ARV A;  3KFD A;  5FV1 V;  2GYR A;  5F3B C;  1NYS B;  2FJH V;  3BMP A;  4QHU C;  5BQE A;  4HSA A;  2H62 A;  3V6B A;  2X1X E;  1ES7 A;  4YCG C;  5BQC A;  2VWE A;  4HR9 A;  2R52 A;  3B4V A;  1JPY A;  1QTY R;  5HI3 A;  1PDG A;  4KV5 A;  1REU A;  1MJV A;  3S1K V;  2VXS A;  1REW A;  5HK5 A;  1SGF B;  2QJB A;  4MPL A;  2BHK A;  2X1W A;  5FV2 V;  5HHX A;  5BQ8 D;  2IFG E;  1WWW V;  5F3H I;  1DZ7 A;  3BK3 A;  5HHC A;  1FZV A;  4UHY A;  1WQ9 A;  4AY9 B;  4AY9 A;  1KLA A;  5JZ7 A;  1KLC A;  3MJK A;  2QCW A;  3P9W A;  4EAX A;  3EO1 C;  1WAQ A;  1BMP A;  1B8M A;  1B8M B;  3BUK A;  4X1J A;  1AOC A;  2QR0 C;  1TGJ A;  1HRP A;  1HRP B;  5BQB A;  4HQU A;  4GLN E;  1LXI A;  4WPB A;  1HCF A;  2R53 A;  2V5E B;  4QCI C;  4HQX A;  4UI2 B;  4MID A;  5HI5 A;  1AGQ A;  4N1D A;  1NT3 A;  1TZH V;  4EDW V;  1MKG A;  5BPU A;  1LX5 A;  2GNN A;  4BV4 L;  2ARP A; 
#chains in the Genus database with same CATH homology
 1BJ1 V;  2TGI A;  2XAC A;  1SG1 A;  1FL7 A;  1FL7 B;  1QFW A;  1QFW B;  1M4U L;  4FAO A;  1TFG A;  4GLS E;  4EDX V;  3MJG A;  2XV7 A;  4UHZ A;  1M4U A;  2GH0 C;  1BTG A;  1TZI V;  1MKK A;  1BND B;  1BND A;  3BDY V;  1FLT V;  1CZ8 V;  1VPF A;  3JVF A;  3RJR A;  2PJY A;  1NYU B;  1XWD A;  1XWD B;  1KTZ A;  4KZN A;  1HCN B;  4UI1 A;  3FUB B;  2GYZ A;  1BET A;  1TGK A;  2FJG V;  5BQ8 B;  4EC7 A;  5BQ8 A;  3V2A A;  5HHD A;  4QAF C;  1E9J A;  3QTK A;  1HD4 A;  2QJ9 A;  1S4Y B;  3EVS B;  2GOO A;  5HHV A;  5BQE B;  3QB4 A;  1B98 A;  1B8K A;  1KAT W;  4ZFF C;  2VPF A;  3IJ2 A;  4ZBN A;  4UI0 A;  5HK5 E;  4KXZ A;  4LXR J;  1VPP V;  5HI4 A;  4MQW B;  4MQW A;  5AEJ A;  1WQ8 A;  5E4G A;  4XPJ A;  2ASK A;  3HH2 A;  1ZKZ A;  2P6A A;  4LXS J;  3E07 A;  3S1B V;  2C7W A;  4YCI C;  3SEK B;  1RV6 V;  2H64 A;  1HCN A;  2QJA A;  2B0U A;  4EFV A;  1WQ9 B;  2QCQ A;  2KD3 A;  2ARV A;  3KFD A;  5FV1 V;  2GYR A;  5F3B C;  1NYS B;  2FJH V;  3BMP A;  4QHU C;  5BQE A;  4HSA A;  2H62 A;  3V6B A;  2X1X E;  1ES7 A;  4YCG C;  5BQC A;  2VWE A;  4HR9 A;  2R52 A;  3B4V A;  1JPY A;  1QTY R;  5HI3 A;  1PDG A;  4KV5 A;  1REU A;  1MJV A;  3S1K V;  2VXS A;  1REW A;  5HK5 A;  1SGF B;  2QJB A;  4MPL A;  2BHK A;  2X1W A;  5FV2 V;  5HHX A;  5BQ8 D;  2IFG E;  1WWW V;  5F3H I;  1DZ7 A;  3BK3 A;  5HHC A;  1FZV A;  4UHY A;  1WQ9 A;  4AY9 B;  4AY9 A;  1KLA A;  5JZ7 A;  1KLC A;  3MJK A;  2QCW A;  3P9W A;  4EAX A;  3EO1 C;  1WAQ A;  1BMP A;  1B8M A;  1B8M B;  3BUK A;  4X1J A;  1AOC A;  2QR0 C;  1TGJ A;  1HRP A;  1HRP B;  5BQB A;  4HQU A;  4GLN E;  1LXI A;  4WPB A;  1HCF A;  2R53 A;  2V5E B;  4QCI C;  4HQX A;  4UI2 B;  4MID A;  5HI5 A;  1AGQ A;  4N1D A;  1NT3 A;  1TZH V;  4EDW V;  1MKG A;  5BPU A;  1LX5 A;  2GNN A;  4BV4 L;  2ARP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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