3S1QC

Rna polymerase ii initiation complex with a 5-nt 3'-deoxy rna soaked with atp
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
266
structure length
266
Chain Sequence
EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna/dna
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Initiation complex structure and promoter proofreading.
pubmed doi rcsb
total genus 60
structure length 266
sequence length 266
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
C PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 DNA-directed RNA polymerase, insert domain 3s1qC02
3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 RNA polymerase, RBP11-like subunit 3s1qC01
4A3KK 4A3KC 5C4XC 5C4XK 2A68A 4A3FK 4A3FC 4A3JK 5C3EK 5C3EC 4A3EC 4A3EK 3M3YK 1I6VA 4BBRK 1BDFA 4BBRC 4QIWD 1I50K 1I50C 5IYDC 1TWCK 1TWCC 2Y0SD 3HKZD 4A3BK 4A3BC 2A6HA 1XPPA 2PA8L 4BY7C 3PO2K 3PO2C 4X6AK 4X6AC 4Y52K 4Y52C 5C44C 5C44K 1IW7A 4C3JC 4MEYA 3HOYK 3HOYC 2R92K 2R92C 3S1MK 3S1MC 2R7ZK 4AYBD 4XSZA 2R7ZC 4ZH4A 4XLPA 2E2HK 5M5YK 5M5WK 2WB1D 3GTQC 5TMCA 5IP9C 5IP9K 4GZYA 4LLGA 2JA5K 2JA5C 3H3VD 2R93K 2R93C 4Q5SA 4A3DK 4C3IK 4C3IC 4A3JC 2NVYC 4KN7A 2NVYK 4QIWL 2NVTK 2NVTC 4C3HC 3M3YC 4OIPA 3WODA 2JA8C 3FKIK 3FKIC 3HKZL 4C3HK 1TWHK 1TWHC 2BE5A 3GTLC 3GTLK 5TMFA 3S2HK 3S2HC 1TWAK 1TWAC 2B63K 2B63C 3K7AK 3K7AC 3RZOK 4BY7K 1K83K 3S15K 3S15C 5M5XK 4OIOA 3GTKK 3GTKC 1YNNA 4JK1A 4Q4ZA 2WB1L 3S17C 4BY1C 4BY1K 4YFKA 3S17K 1TWFK 1TWFC 4G7ZA 4QJVB 3RZDK 3RZDC 4NOIA 4YFXA 3S1NK 3S1NC 3S16K 2CW0A 5C4JC 4OINA 2NVQC 3I4NC 5C4JK 2NVQK 3I4NK 2A69A 1TWGC 1TWGK 5M3MK 1WCMK 1WCMC 3EQLA 4LK1A 4OIQA 2Y0SL 3M4OK 1YNJA 1I3QK 5M3FK 1ZYRA 2WAQD 4BBSK 4BBSC 2VUMK 2VUMC 3GTOK 3GTOC 3RZOC 5FJ8K 4G7OA 3DXJA 3H0GK 1K83C 3H0GC 2PMZD 4G7HA 4A3GK 4A3GC 4AYBL 3S1QK 4LJZA 3S1QC 4C2MK 4KN4A 4C2MC 1I6HK 1I6HC 4YFNA 4Y7NK 4Y7NC 5FLMK 5FLMC 2JA6C 2JA6K 4LK0A 4A3CK 4A3CC 3GTPC 3GTPK 4QJVA 2JA7K 2JA7C 4XLNA 3H3VL 3CQZK 3CQZC 3HOWC 3HOWK 4MEXA 3S14K 3S14C 3GTGC 3GTGK 4A3LC 2A6EA 4A93C 4A3DC 4A3LK 4A93K 1SFOK 1SFOC 1R9TC 1R9TK 2E2JC 2E2JK 4A3IK 4A3IC 3S16C 2JA8K 3HOZK 3HOZC 4A3MC 3GTMC 4A3MK 2WAQL 3GTMK 2PPBA 5IYDK 1HQMA 5IYBC 4XSXA 5IYBK 3S1RK 1SMYA 3S1RC 1I3QC 1Y1VC 4KMUA 2E2HC 5IYCC 3M4OC 1Y1VK 3PO3C 2PMZL 2YU9C 3S2DC 4YG2A 5IYCK 2YU9K 4BXXC 3PO3K 2O5JA 3S2DK 4BXXK 4MQ9A 3HOVC 4C3JK 3HOVK 2PA8D 2E2IK 2E2IC 5D4DA 3GTJK 3GTJC 3I4MC 3HOXC 3HOXK 3I4MK 2NVXK 2NVXC 3HOUK 3HOUC 3GTQK 5IP7K 5IP7C 1Y1WK 1Y1WC 2O5IA 4OIRA
chains in the Genus database with same CATH superfamily
4KM9A 3GEHA 4BBRK 1BDFA 4BBRC 3FHZA 3GTKA 1I50K 1I50C 4KASA 1ZBSA 2Y0SD 3HKZD 5DM7S 1IL2A 2FQTA 4GTLA 5C44K 5C44C 1ZXOA 3HOYK 3HOYC 2R92K 2R92C 1TWGA 3G4CA 1XZPA 2E2HA 2WB1D 3GTQC 5TMCA 3QX3A 1DCOA 1XXBA 4Q5SA 4KC6A 3GTOA 1O25A 2NVTK 2NVTC 1WQFA 3A8IA 1ZVUA 1TWHK 1TWHC 1TWAK 1TWAC 3LAPA 3AQPA 5E68A 2JA7A 4BKWA 3CQZA 2CFAB 3SZZA 4BLBA 4OIOA 3GTKK 3GTKC 3LPXA 3DLLS 3BP8C 1J6WA 2ZUEA 1J98A 4YFKA 1WORA 3L4KA 1WOSA 4GFQA 3N0BA 2KWAA 2V6SA 1TWGK 1TWGC 2EBBA 2E2IA 2NVXA 3M4OK 5M3FK 4BBSK 4BBSC 4RMFA 1V5VA 4GTEA 3GTOC 1EFWA 3GTOK 2JA5A 3H0GK 1K83C 3H0GC 2L5NA 4KAWX 4KN4A 4KDDA 3TFIA 4YFNA 5JVOA 2JA6K 2JA6C 4A3CK 4A3CC 3GTPC 3GTPK 2JA7K 2JA7C 4PABA 3CQZK 3CQZC 3H3VL 2P8TA 3S14K 3S14C 4A93K 4A93C 4A3DC 1WOPA 3AQOA 4A3DK 5EGHA 2XCQA 3ADAC 5IOQA 1YCLA 5IYDK 5IYBK 5IYBC 4XSXA 2RH6A 2R7ZA 5IOTA 4G0UA 5IYCK 5IYCC 4BY7K 1XZQA 4WJ3M 3S2DK 3S2DC 1VLOA 2O5JA 3HOVK 3HOVC 1DCPA 2E2IK 2E2IC 3I4MK 3I4MC 3HOXC 3HOXK 2NVXK 2NVXC 5HL8A 3HOUK 3HOUC 3AD8C 4KB4A 3FOEA 5IP7K 5IP7C 1Y1WK 1Y1WC 3ERED 4KM8A 5IORA 5JVGS 2KPUA 3OPFA 4GTDA 3TFHA 4GT9A 1I6VA 5IOSA 1PJ6A 1TWCK 1TWCC 1XPPA 3BP3A 3PO2K 3PO2C 3GTGA 4X6AC 4X6AK 4Y52C 4Y52K 1IW7A 5TJ3A 4C3JC 3V4GA 4WCES 3NUHA 3G4AA 2R7ZK 2R7ZC 4ZH4A 3CAGA 1WCMA 4IO9S 1ISEA 1I3QA 1FEUA 2ZJPS 3H3VD 4PAAA 4C3IK 4C3IC 4QIWL 4C3HK 4C3HC 3WODA 4FZBA 3FKIK 3FKIC 4G0WA 3IPJA 3LYWA 5TMFA 4WFAS 1VJEA 3RZOK 4AH6A 1PJ7A 4WFBS 5M5XK 3N0CA 4JK1A 3N3YA 3S17K 3S17C 3GTMA 3GEIA 4P5AA 4NOIA 1Y1VA 3A8KA 3PIPS 2YU9A 5C4JK 5C4JC 4IOCS 3I4NK 3I4NC 2A69A 1WCMK 1WCMC 2XCOA 4GTCA 1I3QK 2WAQD 1BS2A 1WSRA 4KB2A 1F9NA 2CFAA 4G7OA 4P5BA 3VA7A 5CHPA 4A3GK 4A3GC 4C45A 4AYBL 4C2MK 4C2MC 4LK0A 1AB4A 3HOWK 3HOWC 1O27A 5CJ9A 4A3LK 4A3LC 2A6EA 2ZUFA 1IBAA 3GTMK 3GTMC 1J6XA 1WSVA 5HQHA 2PPBA 1HQMA 3LAJA 2E2HK 2E2HC 4KMUA 1Y1VC 3M4OC 1Y1VK 2PMZL 2YU9C 2YU9K 3A8JA 2ZFZA 1DCHA 2R93A 1F7UA 4LQYA 5EGEA 2GSUA 4J3NA 3GTLA 1VRQC 1IS1A 2O5IA 4OIRA 4A3KK 4A3KC 3PIOS 3GDZA 2A68A 4A3JK 5C3EK 5C3EC 4A3EC 4A3EK 1G51A 1O2AA 5JVHS 2P5MA 3Q3QA 5IYDC 2FQOA 1EK8A 4A3BK 4A3BC 2PA8L 1WQGA 4BY7C 1DD5A 4MEYA 4LOWA 1B4AA 1J6VA 3HXAA 4M1XA 4AYBD 4XSZA 5M5YK 1ZQ1C 2Y3PA 5M5WK 3S0XA 4GZYA 2JA5K 2JA5C 2R93K 2R93C 1EQRA 1UV7A 1XXCA 4OIPA 3HKZL 2BE5A 3GTLC 3GTLK 3S2HK 3S2HC 1C0AA 2XCRB 1KQ4A 4LR2A 3AH5A 4XCHA 1R9TA 4Q4ZA 1O26A 2WB1L 4BLAA 4BY1C 4BY1K 1BGWA 1YX2A 4QJVB 4P9SA 3RZDK 3RZDC 4YFXA 4IOAS 3TTGA 3S16K 4OINA 2R92A 3GTJA 4LK1A 1ZYRA 3GIRA 3GTQA 3RZOC 5FJ8K 1HI9A 1WIHA 3DXJA 4G7HA 4LJZA 1I6HK 1I6HC 4Y7NK 4Y7NC 5FLMK 5FLMC 4FM9A 1BJTA 4XLNA 4G0VA 4MEXA 2GAGC 3AD9C 3GTGK 3GTGC 3GSIA 1R9TK 1R9TC 1IE0A 1PJ5A 2PHCB 1USMA 1B4BA 5JFEA 3CF5S 1I3QC 3PO3K 3PO3C 2L3UA 4YG2A 2W7VA 1JQWA 4MQ9A 4U67S 3MMLB 3OEPA 3GTJK 3GTJC 1O24A 2NVYA 1USOA 1XZPB 3GTQK 3SZYA 4KMDA 3M3YK 3M3YC 2B63A 5C4XK 5C4XC 1L0WA 3TFJA 4A3FK 4A3FC 1VGXA 1XXAA 3H0GA 1K83A 2GSNA 1JOEA 4QIWD 1O28A 4WILA 3GEEA 2RGRA 2JA6A 3GTPA 4WF9S 1TWFA 2GAHC 2A6HA 4GTFA 1JVIA 3L4JA 2V6UA 3S1MK 3S1MC 3T00A 4ILDA 4XLPA 2D6FC 1VH2A 1INNA 5IP9K 5IP9C 1WQHA 4LLGA 2VUMA 2JH3A 3T02A 5DM6S 2ZJQS 2NVYC 4KN7A 4A3JC 2NVYK 2JA8K 2JA8C 1RU0A 4GTAA 2B63K 2B63C 3K7AK 3K7AC 1Y1WA 1EI6A 2KQ1A 5L46A 1K83K 3S15K 3S15C 1IQ0A 1F93A 1YNNA 1SFOA 2KXYA 3T01A 1TWFK 1TWFC 4GTBA 4G7ZA 1TWCA 3S1NK 4WFNS 3S1NC 1O2BA 3AD7C 2CW0A 2NVQK 2NVQC 1F7VA 4WJ4A 4DDQA 5M3MK 3EQLA 4OIQA 2Y0SL 1YNJA 1XZQB 2VUMC 2VUMK 1O2FB 2PMZD 3S1QK 3S1QC 3FKIA 1X31C 1I50A 4O2DA 4QJVA 4KATA 3FOFA 1SFOK 1SFOC 2E2JK 2ZJRS 2E2JC 2GSOA 4A3IK 4A3IC 3S16C 4KMAA 3HOZK 3HOZC 4A3MC 4A3MK 2WAQL 1EH1A 1WOOA 3JSTA 3OREA 1SMYA 3S1RC 3BUEA 3S1RK 4BXXK 4BXXC 5HL7S 4C3JK 1GE9A 2PA8D 1O29A 5D4DA 4KARA 1TWHA 4KMHA 1TWAA 2V6TA
chains in the Genus database with same CATH topology
4A3KK 4A3KC 5C4XC 5C4XK 2A68A 4A3FK 4A3FC 4A3JK 5C3EK 5C3EC 4A3EC 4A3EK 3M3YK 1I6VA 4BBRK 1BDFA 4BBRC 4QIWD 1I50K 1I50C 5IYDC 1TWCK 1TWCC 2Y0SD 3HKZD 4A3BK 4A3BC 2A6HA 1XPPA 2PA8L 4BY7C 3PO2K 3PO2C 4X6AK 4X6AC 4Y52K 4Y52C 5C44C 5C44K 1IW7A 4C3JC 4MEYA 3HOYK 3HOYC 2R92K 2R92C 3S1MK 3S1MC 2R7ZK 4AYBD 4XSZA 2R7ZC 4ZH4A 4XLPA 2E2HK 5M5YK 5M5WK 2WB1D 3GTQC 5TMCA 5IP9C 5IP9K 4GZYA 4LLGA 2JA5K 2JA5C 3H3VD 2R93K 2R93C 4Q5SA 4A3DK 4C3IK 4C3IC 4A3JC 2NVYC 4KN7A 2NVYK 4QIWL 2NVTK 2NVTC 4C3HC 3M3YC 4OIPA 3WODA 2JA8C 3FKIK 3FKIC 3HKZL 4C3HK 1TWHK 1TWHC 2BE5A 3GTLC 3GTLK 5TMFA 3S2HK 3S2HC 1TWAK 1TWAC 2B63K 2B63C 3K7AK 3K7AC 3RZOK 4BY7K 1K83K 3S15K 3S15C 5M5XK 4OIOA 3GTKK 3GTKC 1YNNA 4JK1A 4Q4ZA 2WB1L 3S17C 4BY1C 4BY1K 4YFKA 3S17K 1TWFK 1TWFC 4G7ZA 4QJVB 3RZDK 3RZDC 4NOIA 4YFXA 3S1NK 3S1NC 3S16K 2CW0A 5C4JC 4OINA 2NVQC 3I4NC 5C4JK 2NVQK 3I4NK 2A69A 1TWGC 1TWGK 5M3MK 1WCMK 1WCMC 3EQLA 4LK1A 4OIQA 2Y0SL 3M4OK 1YNJA 1I3QK 5M3FK 1ZYRA 2WAQD 4BBSK 4BBSC 2VUMK 2VUMC 3GTOK 3GTOC 3RZOC 5FJ8K 4G7OA 3DXJA 3H0GK 1K83C 3H0GC 2PMZD 4G7HA 4A3GK 4A3GC 4AYBL 3S1QK 4LJZA 3S1QC 4C2MK 4KN4A 4C2MC 1I6HK 1I6HC 4YFNA 4Y7NK 4Y7NC 5FLMK 5FLMC 2JA6C 2JA6K 4LK0A 4A3CK 4A3CC 3GTPC 3GTPK 4QJVA 2JA7K 2JA7C 4XLNA 3H3VL 3CQZK 3CQZC 3HOWC 3HOWK 4MEXA 3S14K 3S14C 3GTGC 3GTGK 4A3LC 2A6EA 4A93C 4A3DC 4A3LK 4A93K 1SFOK 1SFOC 1R9TC 1R9TK 2E2JC 2E2JK 4A3IK 4A3IC 3S16C 2JA8K 3HOZK 3HOZC 4A3MC 3GTMC 4A3MK 2WAQL 3GTMK 2PPBA 5IYDK 1HQMA 5IYBC 4XSXA 5IYBK 3S1RK 1SMYA 3S1RC 1I3QC 1Y1VC 4KMUA 2E2HC 5IYCC 3M4OC 1Y1VK 3PO3C 2PMZL 2YU9C 3S2DC 4YG2A 5IYCK 2YU9K 4BXXC 3PO3K 2O5JA 3S2DK 4BXXK 4MQ9A 3HOVC 4C3JK 3HOVK 2PA8D 2E2IK 2E2IC 5D4DA 3GTJK 3GTJC 3I4MC 3HOXC 3HOXK 3I4MK 2NVXK 2NVXC 3HOUK 3HOUC 3GTQK 5IP7K 5IP7C 1Y1WK 1Y1WC 2O5IA 4OIRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3K K;  4A3K C;  5C4X C;  5C4X K;  2A68 A;  4A3F K;  4A3F C;  4A3J K;  5C3E K;  5C3E C;  4A3E C;  4A3E K;  3M3Y K;  1I6V A;  4BBR K;  1BDF A;  4BBR C;  4QIW D;  1I50 K;  1I50 C;  5IYD C;  1TWC K;  1TWC C;  2Y0S D;  3HKZ D;  4A3B K;  4A3B C;  2A6H A;  1XPP A;  2PA8 L;  4BY7 C;  3PO2 K;  3PO2 C;  4X6A K;  4X6A C;  4Y52 K;  4Y52 C;  5C44 C;  5C44 K;  1IW7 A;  4C3J C;  4MEY A;  3HOY K;  3HOY C;  2R92 K;  2R92 C;  3S1M K;  3S1M C;  2R7Z K;  4AYB D;  4XSZ A;  2R7Z C;  4ZH4 A;  4XLP A;  2E2H K;  5M5Y K;  5M5W K;  2WB1 D;  3GTQ C;  5TMC A;  5IP9 C;  5IP9 K;  4GZY A;  4LLG A;  2JA5 K;  2JA5 C;  3H3V D;  2R93 K;  2R93 C;  4Q5S A;  4A3D K;  4C3I K;  4C3I C;  4A3J C;  2NVY C;  4KN7 A;  2NVY K;  4QIW L;  2NVT K;  2NVT C;  4C3H C;  3M3Y C;  4OIP A;  3WOD A;  2JA8 C;  3FKI K;  3FKI C;  3HKZ L;  4C3H K;  1TWH K;  1TWH C;  2BE5 A;  3GTL C;  3GTL K;  5TMF A;  3S2H K;  3S2H C;  1TWA K;  1TWA C;  2B63 K;  2B63 C;  3K7A K;  3K7A C;  3RZO K;  4BY7 K;  1K83 K;  3S15 K;  3S15 C;  5M5X K;  4OIO A;  3GTK K;  3GTK C;  1YNN A;  4JK1 A;  4Q4Z A;  2WB1 L;  3S17 C;  4BY1 C;  4BY1 K;  4YFK A;  3S17 K;  1TWF K;  1TWF C;  4G7Z A;  4QJV B;  3RZD K;  3RZD C;  4NOI A;  4YFX A;  3S1N K;  3S1N C;  3S16 K;  2CW0 A;  5C4J C;  4OIN A;  2NVQ C;  3I4N C;  5C4J K;  2NVQ K;  3I4N K;  2A69 A;  1TWG C;  1TWG K;  5M3M K;  1WCM K;  1WCM C;  3EQL A;  4LK1 A;  4OIQ A;  2Y0S L;  3M4O K;  1YNJ A;  1I3Q K;  5M3F K;  1ZYR A;  2WAQ D;  4BBS K;  4BBS C;  2VUM K;  2VUM C;  3GTO K;  3GTO C;  3RZO C;  5FJ8 K;  4G7O A;  3DXJ A;  3H0G K;  1K83 C;  3H0G C;  2PMZ D;  4G7H A;  4A3G K;  4A3G C;  4AYB L;  3S1Q K;  4LJZ A;  3S1Q C;  4C2M K;  4KN4 A;  4C2M C;  1I6H K;  1I6H C;  4YFN A;  4Y7N K;  4Y7N C;  5FLM K;  5FLM C;  2JA6 C;  2JA6 K;  4LK0 A;  4A3C K;  4A3C C;  3GTP C;  3GTP K;  4QJV A;  2JA7 K;  2JA7 C;  4XLN A;  3H3V L;  3CQZ K;  3CQZ C;  3HOW C;  3HOW K;  4MEX A;  3S14 K;  3S14 C;  3GTG C;  3GTG K;  4A3L C;  2A6E A;  4A93 C;  4A3D C;  4A3L K;  4A93 K;  1SFO K;  1SFO C;  1R9T C;  1R9T K;  2E2J C;  2E2J K;  4A3I K;  4A3I C;  3S16 C;  2JA8 K;  3HOZ K;  3HOZ C;  4A3M C;  3GTM C;  4A3M K;  2WAQ L;  3GTM K;  2PPB A;  5IYD K;  1HQM A;  5IYB C;  4XSX A;  5IYB K;  3S1R K;  1SMY A;  3S1R C;  1I3Q C;  1Y1V C;  4KMU A;  2E2H C;  5IYC C;  3M4O C;  1Y1V K;  3PO3 C;  2PMZ L;  2YU9 C;  3S2D C;  4YG2 A;  5IYC K;  2YU9 K;  4BXX C;  3PO3 K;  2O5J A;  3S2D K;  4BXX K;  4MQ9 A;  3HOV C;  4C3J K;  3HOV K;  2PA8 D;  2E2I K;  2E2I C;  5D4D A;  3GTJ K;  3GTJ C;  3I4M C;  3HOX C;  3HOX K;  3I4M K;  2NVX K;  2NVX C;  3HOU K;  3HOU C;  3GTQ K;  5IP7 K;  5IP7 C;  1Y1W K;  1Y1W C;  2O5I A;  4OIR A; 
#chains in the Genus database with same CATH topology
 4KM9 A;  3GEH A;  4BBR K;  1BDF A;  4BBR C;  3FHZ A;  3GTK A;  1I50 K;  1I50 C;  4KAS A;  1ZBS A;  2Y0S D;  3HKZ D;  5DM7 S;  1IL2 A;  2FQT A;  4GTL A;  5C44 K;  5C44 C;  1ZXO A;  3HOY K;  3HOY C;  2R92 K;  2R92 C;  1TWG A;  3G4C A;  1XZP A;  2E2H A;  2WB1 D;  3GTQ C;  5TMC A;  3QX3 A;  1DCO A;  1XXB A;  4Q5S A;  4KC6 A;  3GTO A;  1O25 A;  2NVT K;  2NVT C;  1WQF A;  3A8I A;  1ZVU A;  1TWH K;  1TWH C;  1TWA K;  1TWA C;  3LAP A;  3AQP A;  5E68 A;  2JA7 A;  4BKW A;  3CQZ A;  2CFA B;  3SZZ A;  4BLB A;  4OIO A;  3GTK K;  3GTK C;  3LPX A;  3DLL S;  3BP8 C;  1J6W A;  2ZUE A;  1J98 A;  4YFK A;  1WOR A;  3L4K A;  1WOS A;  4GFQ A;  3N0B A;  2KWA A;  2V6S A;  1TWG K;  1TWG C;  2EBB A;  2E2I A;  2NVX A;  3M4O K;  5M3F K;  4BBS K;  4BBS C;  4RMF A;  1V5V A;  4GTE A;  3GTO C;  1EFW A;  3GTO K;  2JA5 A;  3H0G K;  1K83 C;  3H0G C;  2L5N A;  4KAW X;  4KN4 A;  4KDD A;  3TFI A;  4YFN A;  5JVO A;  2JA6 K;  2JA6 C;  4A3C K;  4A3C C;  3GTP C;  3GTP K;  2JA7 K;  2JA7 C;  4PAB A;  3CQZ K;  3CQZ C;  3H3V L;  2P8T A;  3S14 K;  3S14 C;  4A93 K;  4A93 C;  4A3D C;  1WOP A;  3AQO A;  4A3D K;  5EGH A;  2XCQ A;  3ADA C;  5IOQ A;  1YCL A;  5IYD K;  5IYB K;  5IYB C;  4XSX A;  2RH6 A;  2R7Z A;  5IOT A;  4G0U A;  5IYC K;  5IYC C;  4BY7 K;  1XZQ A;  4WJ3 M;  3S2D K;  3S2D C;  1VLO A;  2O5J A;  3HOV K;  3HOV C;  1DCP A;  2E2I K;  2E2I C;  3I4M K;  3I4M C;  3HOX C;  3HOX K;  2NVX K;  2NVX C;  5HL8 A;  3HOU K;  3HOU C;  3AD8 C;  4KB4 A;  3FOE A;  5IP7 K;  5IP7 C;  1Y1W K;  1Y1W C;  3ERE D;  4KM8 A;  5IOR A;  5JVG S;  2KPU A;  3OPF A;  4GTD A;  3TFH A;  4GT9 A;  1I6V A;  5IOS A;  1PJ6 A;  1TWC K;  1TWC C;  1XPP A;  3BP3 A;  3PO2 K;  3PO2 C;  3GTG A;  4X6A C;  4X6A K;  4Y52 C;  4Y52 K;  1IW7 A;  5TJ3 A;  4C3J C;  3V4G A;  4WCE S;  3NUH A;  3G4A A;  2R7Z K;  2R7Z C;  4ZH4 A;  3CAG A;  1WCM A;  4IO9 S;  1ISE A;  1I3Q A;  1FEU A;  2ZJP S;  3H3V D;  4PAA A;  4C3I K;  4C3I C;  4QIW L;  4C3H K;  4C3H C;  3WOD A;  4FZB A;  3FKI K;  3FKI C;  4G0W A;  3IPJ A;  3LYW A;  5TMF A;  4WFA S;  1VJE A;  3RZO K;  4AH6 A;  1PJ7 A;  4WFB S;  5M5X K;  3N0C A;  4JK1 A;  3N3Y A;  3S17 K;  3S17 C;  3GTM A;  3GEI A;  4P5A A;  4NOI A;  1Y1V A;  3A8K A;  3PIP S;  2YU9 A;  5C4J K;  5C4J C;  4IOC S;  3I4N K;  3I4N C;  2A69 A;  1WCM K;  1WCM C;  2XCO A;  4GTC A;  1I3Q K;  2WAQ D;  1BS2 A;  1WSR A;  4KB2 A;  1F9N A;  2CFA A;  4G7O A;  4P5B A;  3VA7 A;  5CHP A;  4A3G K;  4A3G C;  4C45 A;  4AYB L;  4C2M K;  4C2M C;  4LK0 A;  1AB4 A;  3HOW K;  3HOW C;  1O27 A;  5CJ9 A;  4A3L K;  4A3L C;  2A6E A;  2ZUF A;  1IBA A;  3GTM K;  3GTM C;  1J6X A;  1WSV A;  5HQH A;  2PPB A;  1HQM A;  3LAJ A;  2E2H K;  2E2H C;  4KMU A;  1Y1V C;  3M4O C;  1Y1V K;  2PMZ L;  2YU9 C;  2YU9 K;  3A8J A;  2ZFZ A;  1DCH A;  2R93 A;  1F7U A;  4LQY A;  5EGE A;  2GSU A;  4J3N A;  3GTL A;  1VRQ C;  1IS1 A;  2O5I A;  4OIR A;  4A3K K;  4A3K C;  3PIO S;  3GDZ A;  2A68 A;  4A3J K;  5C3E K;  5C3E C;  4A3E C;  4A3E K;  1G51 A;  1O2A A;  5JVH S;  2P5M A;  3Q3Q A;  5IYD C;  2FQO A;  1EK8 A;  4A3B K;  4A3B C;  2PA8 L;  1WQG A;  4BY7 C;  1DD5 A;  4MEY A;  4LOW A;  1B4A A;  1J6V A;  3HXA A;  4M1X A;  4AYB D;  4XSZ A;  5M5Y K;  1ZQ1 C;  2Y3P A;  5M5W K;  3S0X A;  4GZY A;  2JA5 K;  2JA5 C;  2R93 K;  2R93 C;  1EQR A;  1UV7 A;  1XXC A;  4OIP A;  3HKZ L;  2BE5 A;  3GTL C;  3GTL K;  3S2H K;  3S2H C;  1C0A A;  2XCR B;  1KQ4 A;  4LR2 A;  3AH5 A;  4XCH A;  1R9T A;  4Q4Z A;  1O26 A;  2WB1 L;  4BLA A;  4BY1 C;  4BY1 K;  1BGW A;  1YX2 A;  4QJV B;  4P9S A;  3RZD K;  3RZD C;  4YFX A;  4IOA S;  3TTG A;  3S16 K;  4OIN A;  2R92 A;  3GTJ A;  4LK1 A;  1ZYR A;  3GIR A;  3GTQ A;  3RZO C;  5FJ8 K;  1HI9 A;  1WIH A;  3DXJ A;  4G7H A;  4LJZ A;  1I6H K;  1I6H C;  4Y7N K;  4Y7N C;  5FLM K;  5FLM C;  4FM9 A;  1BJT A;  4XLN A;  4G0V A;  4MEX A;  2GAG C;  3AD9 C;  3GTG K;  3GTG C;  3GSI A;  1R9T K;  1R9T C;  1IE0 A;  1PJ5 A;  2PHC B;  1USM A;  1B4B A;  5JFE A;  3CF5 S;  1I3Q C;  3PO3 K;  3PO3 C;  2L3U A;  4YG2 A;  2W7V A;  1JQW A;  4MQ9 A;  4U67 S;  3MML B;  3OEP A;  3GTJ K;  3GTJ C;  1O24 A;  2NVY A;  1USO A;  1XZP B;  3GTQ K;  3SZY A;  4KMD A;  3M3Y K;  3M3Y C;  2B63 A;  5C4X K;  5C4X C;  1L0W A;  3TFJ A;  4A3F K;  4A3F C;  1VGX A;  1XXA A;  3H0G A;  1K83 A;  2GSN A;  1JOE A;  4QIW D;  1O28 A;  4WIL A;  3GEE A;  2RGR A;  2JA6 A;  3GTP A;  4WF9 S;  1TWF A;  2GAH C;  2A6H A;  4GTF A;  1JVI A;  3L4J A;  2V6U A;  3S1M K;  3S1M C;  3T00 A;  4ILD A;  4XLP A;  2D6F C;  1VH2 A;  1INN A;  5IP9 K;  5IP9 C;  1WQH A;  4LLG A;  2VUM A;  2JH3 A;  3T02 A;  5DM6 S;  2ZJQ S;  2NVY C;  4KN7 A;  4A3J C;  2NVY K;  2JA8 K;  2JA8 C;  1RU0 A;  4GTA A;  2B63 K;  2B63 C;  3K7A K;  3K7A C;  1Y1W A;  1EI6 A;  2KQ1 A;  5L46 A;  1K83 K;  3S15 K;  3S15 C;  1IQ0 A;  1F93 A;  1YNN A;  1SFO A;  2KXY A;  3T01 A;  1TWF K;  1TWF C;  4GTB A;  4G7Z A;  1TWC A;  3S1N K;  4WFN S;  3S1N C;  1O2B A;  3AD7 C;  2CW0 A;  2NVQ K;  2NVQ C;  1F7V A;  4WJ4 A;  4DDQ A;  5M3M K;  3EQL A;  4OIQ A;  2Y0S L;  1YNJ A;  1XZQ B;  2VUM C;  2VUM K;  1O2F B;  2PMZ D;  3S1Q K;  3S1Q C;  3FKI A;  1X31 C;  1I50 A;  4O2D A;  4QJV A;  4KAT A;  3FOF A;  1SFO K;  1SFO C;  2E2J K;  2ZJR S;  2E2J C;  2GSO A;  4A3I K;  4A3I C;  3S16 C;  4KMA A;  3HOZ K;  3HOZ C;  4A3M C;  4A3M K;  2WAQ L;  1EH1 A;  1WOO A;  3JST A;  3ORE A;  1SMY A;  3S1R C;  3BUE A;  3S1R K;  4BXX K;  4BXX C;  5HL7 S;  4C3J K;  1GE9 A;  2PA8 D;  1O29 A;  5D4D A;  4KAR A;  1TWH A;  4KMH A;  1TWA A;  2V6T A; 
#chains in the Genus database with same CATH homology
 4A3K K;  4A3K C;  5C4X C;  5C4X K;  2A68 A;  4A3F K;  4A3F C;  4A3J K;  5C3E K;  5C3E C;  4A3E C;  4A3E K;  3M3Y K;  1I6V A;  4BBR K;  1BDF A;  4BBR C;  4QIW D;  1I50 K;  1I50 C;  5IYD C;  1TWC K;  1TWC C;  2Y0S D;  3HKZ D;  4A3B K;  4A3B C;  2A6H A;  1XPP A;  2PA8 L;  4BY7 C;  3PO2 K;  3PO2 C;  4X6A K;  4X6A C;  4Y52 K;  4Y52 C;  5C44 C;  5C44 K;  1IW7 A;  4C3J C;  4MEY A;  3HOY K;  3HOY C;  2R92 K;  2R92 C;  3S1M K;  3S1M C;  2R7Z K;  4AYB D;  4XSZ A;  2R7Z C;  4ZH4 A;  4XLP A;  2E2H K;  5M5Y K;  5M5W K;  2WB1 D;  3GTQ C;  5TMC A;  5IP9 C;  5IP9 K;  4GZY A;  4LLG A;  2JA5 K;  2JA5 C;  3H3V D;  2R93 K;  2R93 C;  4Q5S A;  4A3D K;  4C3I K;  4C3I C;  4A3J C;  2NVY C;  4KN7 A;  2NVY K;  4QIW L;  2NVT K;  2NVT C;  4C3H C;  3M3Y C;  4OIP A;  3WOD A;  2JA8 C;  3FKI K;  3FKI C;  3HKZ L;  4C3H K;  1TWH K;  1TWH C;  2BE5 A;  3GTL C;  3GTL K;  5TMF A;  3S2H K;  3S2H C;  1TWA K;  1TWA C;  2B63 K;  2B63 C;  3K7A K;  3K7A C;  3RZO K;  4BY7 K;  1K83 K;  3S15 K;  3S15 C;  5M5X K;  4OIO A;  3GTK K;  3GTK C;  1YNN A;  4JK1 A;  4Q4Z A;  2WB1 L;  3S17 C;  4BY1 C;  4BY1 K;  4YFK A;  3S17 K;  1TWF K;  1TWF C;  4G7Z A;  4QJV B;  3RZD K;  3RZD C;  4NOI A;  4YFX A;  3S1N K;  3S1N C;  3S16 K;  2CW0 A;  5C4J C;  4OIN A;  2NVQ C;  3I4N C;  5C4J K;  2NVQ K;  3I4N K;  2A69 A;  1TWG C;  1TWG K;  5M3M K;  1WCM K;  1WCM C;  3EQL A;  4LK1 A;  4OIQ A;  2Y0S L;  3M4O K;  1YNJ A;  1I3Q K;  5M3F K;  1ZYR A;  2WAQ D;  4BBS K;  4BBS C;  2VUM K;  2VUM C;  3GTO K;  3GTO C;  3RZO C;  5FJ8 K;  4G7O A;  3DXJ A;  3H0G K;  1K83 C;  3H0G C;  2PMZ D;  4G7H A;  4A3G K;  4A3G C;  4AYB L;  3S1Q K;  4LJZ A;  3S1Q C;  4C2M K;  4KN4 A;  4C2M C;  1I6H K;  1I6H C;  4YFN A;  4Y7N K;  4Y7N C;  5FLM K;  5FLM C;  2JA6 C;  2JA6 K;  4LK0 A;  4A3C K;  4A3C C;  3GTP C;  3GTP K;  4QJV A;  2JA7 K;  2JA7 C;  4XLN A;  3H3V L;  3CQZ K;  3CQZ C;  3HOW C;  3HOW K;  4MEX A;  3S14 K;  3S14 C;  3GTG C;  3GTG K;  4A3L C;  2A6E A;  4A93 C;  4A3D C;  4A3L K;  4A93 K;  1SFO K;  1SFO C;  1R9T C;  1R9T K;  2E2J C;  2E2J K;  4A3I K;  4A3I C;  3S16 C;  2JA8 K;  3HOZ K;  3HOZ C;  4A3M C;  3GTM C;  4A3M K;  2WAQ L;  3GTM K;  2PPB A;  5IYD K;  1HQM A;  5IYB C;  4XSX A;  5IYB K;  3S1R K;  1SMY A;  3S1R C;  1I3Q C;  1Y1V C;  4KMU A;  2E2H C;  5IYC C;  3M4O C;  1Y1V K;  3PO3 C;  2PMZ L;  2YU9 C;  3S2D C;  4YG2 A;  5IYC K;  2YU9 K;  4BXX C;  3PO3 K;  2O5J A;  3S2D K;  4BXX K;  4MQ9 A;  3HOV C;  4C3J K;  3HOV K;  2PA8 D;  2E2I K;  2E2I C;  5D4D A;  3GTJ K;  3GTJ C;  3I4M C;  3HOX C;  3HOX K;  3I4M K;  2NVX K;  2NVX C;  3HOU K;  3HOU C;  3GTQ K;  5IP7 K;  5IP7 C;  1Y1W K;  1Y1W C;  2O5I A;  4OIR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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