3S2RA

Atchloroneet (h87c mutant)
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
64
structure length
64
Chain Sequence
GINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords AT5g51720/MIO24_14
publication title Arabidopsis thaliana ChloroNEET, a Member of the New NEET Family of Human Proteins, is Involved in Development, Senescence and Iron Metabolism.
rcsb
source organism Arabidopsis thaliana
total genus 13
structure length 64
sequence length 64
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09360 zf-CDGSH Iron-binding zinc finger CDGSH type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.90 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal Protein L9; domain 1 3s2rA01
2QH7A 2QD0A 2R13A 4EZFA 4F1EA 4F2CA 4OO7A 3LPQA 3REEA 3FNVA 3TBOA 4OOAA 3TBNA 3EW0A 4F28A 3S2RA 3S2QA
chains in the Genus database with same CATH superfamily
4EZFA 4UY8H 2EHOC 3TBNA 1DIVA 2HJQA 2QH7A 2QD0A 2R13A 4FS8A 4OO7A 2E9XD 4FSDA 3REEA 4KW7A 3FNVA 3J7ZH 3FNDA 3CO4A 3EW0A 2X49A 4F28A 4F2CA 2LSMA 5GHSC 3LPQA 3ANWA 4OOAA 3S2QA 2OUTA 3S2RA 5EG5A 4F1EA 2HVFA 1CQUA 4FR0A 2E9XB 3TBOA 4RSRA 5GHRB 2HBAA 2Q9QB 2X4AA 2HBBA 2Q9QA
chains in the Genus database with same CATH topology
4EZFA 2EHOC 3TBNA 2QH7A 2QD0A 2R13A 4FS8A 4OO7A 2E9XD 4FSDA 3REEA 4KW7A 3FNVA 3EW0A 2X49A 4F28A 4F2CA 2LSMA 5GHSC 3LPQA 3ANWA 4OOAA 2OUTA 3S2RA 5EG5A 4F1EA 4FR0A 2E9XB 3TBOA 4RSRA 5GHRB 3S2QA 2Q9QB 2X4AA 2Q9QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QH7 A;  2QD0 A;  2R13 A;  4EZF A;  4F1E A;  4F2C A;  4OO7 A;  3LPQ A;  3REE A;  3FNV A;  3TBO A;  4OOA A;  3TBN A;  3EW0 A;  4F28 A;  3S2R A;  3S2Q A; 
#chains in the Genus database with same CATH topology
 4EZF A;  4UY8 H;  2EHO C;  3TBN A;  1DIV A;  2HJQ A;  2QH7 A;  2QD0 A;  2R13 A;  4FS8 A;  4OO7 A;  2E9X D;  4FSD A;  3REE A;  4KW7 A;  3FNV A;  3J7Z H;  3FND A;  3CO4 A;  3EW0 A;  2X49 A;  4F28 A;  4F2C A;  2LSM A;  5GHS C;  3LPQ A;  3ANW A;  4OOA A;  3S2Q A;  2OUT A;  3S2R A;  5EG5 A;  4F1E A;  2HVF A;  1CQU A;  4FR0 A;  2E9X B;  3TBO A;  4RSR A;  5GHR B;  2HBA A;  2Q9Q B;  2X4A A;  2HBB A;  2Q9Q A; 
#chains in the Genus database with same CATH homology
 4EZF A;  2EHO C;  3TBN A;  2QH7 A;  2QD0 A;  2R13 A;  4FS8 A;  4OO7 A;  2E9X D;  4FSD A;  3REE A;  4KW7 A;  3FNV A;  3EW0 A;  2X49 A;  4F28 A;  4F2C A;  2LSM A;  5GHS C;  3LPQ A;  3ANW A;  4OOA A;  2OUT A;  3S2R A;  5EG5 A;  4F1E A;  4FR0 A;  2E9X B;  3TBO A;  4RSR A;  5GHR B;  3S2Q A;  2Q9Q B;  2X4A A;  2Q9Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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