3S6AA

Fic protein from neisseria meningitidis in complex with amppnp
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
178
structure length
178
Chain Sequence
KSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEGYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
molecule keywords Cell filamentation protein Fic-related protein
total genus 69
structure length 178
sequence length 178
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2011-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3s6aA00
4X2CA 2G03A 4N67A 2F6SA 2VY3A 4U07A 3ZLMA 5JFFA 3N3UA 5EU0A 4NPSA 4WGJA 4X2DA 3ZCBA 5JJ6A 4ITRA 4U0UA 4LU4A 4M16A 4U0SA 3S6AA 3SN9A 3ZC7A 5JFZA 5JJ7A 2JK8A 4PY3A 4X2EA 4U04A 4XI8A 3SHGA 2VZAA 3SE5A 3LETA 4U0ZA 5CMTA 5CKLA 3CUCA 5CGLA
chains in the Genus database with same CATH superfamily
4X2CA 2G03A 2NUNA 4N67A 2F6SA 2VY3A 4U07A 3ZLMA 5JFFA 3N3UA 5EU0A 4NPSA 4WGJA 4X2DA 3ZCBA 5JJ6A 4ITRA 4U0UA 4LU4A 4M16A 4U0SA 3S6AA 3SN9A 3ZC7A 5JFZA 5JJ7A 2JK8A 2NUDA 4PY3A 4X2EA 4U04A 1NH1A 4XI8A 3SHGA 2VZAA 3SE5A 3LETA 4U0ZA 5CMTA 5CKLA 3CUCA 5CGLA
chains in the Genus database with same CATH topology
4X2CA 2G03A 4N67A 2F6SA 2VY3A 4U07A 3ZLMA 5JFFA 3N3UA 5EU0A 4NPSA 4WGJA 4X2DA 3ZCBA 5JJ6A 4ITRA 4U0UA 4LU4A 4M16A 4U0SA 3S6AA 3SN9A 3ZC7A 5JFZA 5JJ7A 2JK8A 4PY3A 4X2EA 4U04A 4XI8A 3SHGA 2VZAA 3SE5A 3LETA 4U0ZA 5CMTA 5CKLA 3CUCA 5CGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X2C A;  2G03 A;  4N67 A;  2F6S A;  2VY3 A;  4U07 A;  3ZLM A;  5JFF A;  3N3U A;  5EU0 A;  4NPS A;  4WGJ A;  4X2D A;  3ZCB A;  5JJ6 A;  4ITR A;  4U0U A;  4LU4 A;  4M16 A;  4U0S A;  3S6A A;  3SN9 A;  3ZC7 A;  5JFZ A;  5JJ7 A;  2JK8 A;  4PY3 A;  4X2E A;  4U04 A;  4XI8 A;  3SHG A;  2VZA A;  3SE5 A;  3LET A;  4U0Z A;  5CMT A;  5CKL A;  3CUC A;  5CGL A; 
#chains in the Genus database with same CATH topology
 4X2C A;  2G03 A;  2NUN A;  4N67 A;  2F6S A;  2VY3 A;  4U07 A;  3ZLM A;  5JFF A;  3N3U A;  5EU0 A;  4NPS A;  4WGJ A;  4X2D A;  3ZCB A;  5JJ6 A;  4ITR A;  4U0U A;  4LU4 A;  4M16 A;  4U0S A;  3S6A A;  3SN9 A;  3ZC7 A;  5JFZ A;  5JJ7 A;  2JK8 A;  2NUD A;  4PY3 A;  4X2E A;  4U04 A;  1NH1 A;  4XI8 A;  3SHG A;  2VZA A;  3SE5 A;  3LET A;  4U0Z A;  5CMT A;  5CKL A;  3CUC A;  5CGL A; 
#chains in the Genus database with same CATH homology
 4X2C A;  2G03 A;  4N67 A;  2F6S A;  2VY3 A;  4U07 A;  3ZLM A;  5JFF A;  3N3U A;  5EU0 A;  4NPS A;  4WGJ A;  4X2D A;  3ZCB A;  5JJ6 A;  4ITR A;  4U0U A;  4LU4 A;  4M16 A;  4U0S A;  3S6A A;  3SN9 A;  3ZC7 A;  5JFZ A;  5JJ7 A;  2JK8 A;  4PY3 A;  4X2E A;  4U04 A;  4XI8 A;  3SHG A;  2VZA A;  3SE5 A;  3LET A;  4U0Z A;  5CMT A;  5CKL A;  3CUC A;  5CGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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