3S86A

Crystal structure of tm0159 with bound imp
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
189
structure length
189
Chain Sequence
KLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIPHLKEKISHRSKAFRKLFSVLEKIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nucleoside-triphosphatase
publication title Structural and functional characterization of a noncanonical nucleoside triphosphate pyrophosphatase from Thermotoga maritima.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 63
structure length 189
sequence length 189
chains with identical sequence B, C, D
ec nomenclature ec 3.6.1.66: XTP/dITP diphosphatase.
pdb deposition date 2011-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01725 Ham1p_like Ham1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.950.10 Alpha Beta Alpha-Beta Complex Maf protein Maf protein 3s86A00
2P5XA 4F95A 1EX2A 2PYUA 1K7KA 2J4EA 1VP2A 2DVNA 2AMHA 4JHCA 1V7RA 1B78A 1U14A 4BNQA 4OO0A 1EXCA 4HEBA 2E5XA 4P0UA 3S86A 1ZNOA 4LU1A 2MJPA 4P0EA 1U5WA 2DVPA 2Q16A 1ZWYA 3TQUA 2ZTIA 2DVOA 2CARA 2I5DA
chains in the Genus database with same CATH superfamily
2P5XA 4F95A 1EX2A 2A9SA 4UUWA 2PYUA 4UUXA 1K7KA 2J4EA 1VP2A 4CTAB 5KOLA 2DVNA 2AMHA 4UOCA 4JHCA 1V7RA 4CT9A 1B78A 4CTAA 1U14A 4BNQA 4OO0A 5KVKA 1EXCA 4HEBA 2E5XA 4P0UA 3S86A 1ZNOA 4LU1A 2MJPA 4CT8A 4P0EA 1U5WA 2DVPA 2Q16A 1ZWYA 3TQUA 2ZTIA 2DVOA 2CARA 2I5DA
chains in the Genus database with same CATH topology
2P5XA 4F95A 1EX2A 2PYUA 1K7KA 2J4EA 1VP2A 2DVNA 2AMHA 4JHCA 1V7RA 1B78A 1U14A 4BNQA 4OO0A 1EXCA 4HEBA 2E5XA 4P0UA 3S86A 1ZNOA 4LU1A 2MJPA 4P0EA 1U5WA 2DVPA 2Q16A 1ZWYA 3TQUA 2ZTIA 2DVOA 2CARA 2I5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P5X A;  4F95 A;  1EX2 A;  2PYU A;  1K7K A;  2J4E A;  1VP2 A;  2DVN A;  2AMH A;  4JHC A;  1V7R A;  1B78 A;  1U14 A;  4BNQ A;  4OO0 A;  1EXC A;  4HEB A;  2E5X A;  4P0U A;  3S86 A;  1ZNO A;  4LU1 A;  2MJP A;  4P0E A;  1U5W A;  2DVP A;  2Q16 A;  1ZWY A;  3TQU A;  2ZTI A;  2DVO A;  2CAR A;  2I5D A; 
#chains in the Genus database with same CATH topology
 2P5X A;  4F95 A;  1EX2 A;  2A9S A;  4UUW A;  2PYU A;  4UUX A;  1K7K A;  2J4E A;  1VP2 A;  4CTA B;  5KOL A;  2DVN A;  2AMH A;  4UOC A;  4JHC A;  1V7R A;  4CT9 A;  1B78 A;  4CTA A;  1U14 A;  4BNQ A;  4OO0 A;  5KVK A;  1EXC A;  4HEB A;  2E5X A;  4P0U A;  3S86 A;  1ZNO A;  4LU1 A;  2MJP A;  4CT8 A;  4P0E A;  1U5W A;  2DVP A;  2Q16 A;  1ZWY A;  3TQU A;  2ZTI A;  2DVO A;  2CAR A;  2I5D A; 
#chains in the Genus database with same CATH homology
 2P5X A;  4F95 A;  1EX2 A;  2PYU A;  1K7K A;  2J4E A;  1VP2 A;  2DVN A;  2AMH A;  4JHC A;  1V7R A;  1B78 A;  1U14 A;  4BNQ A;  4OO0 A;  1EXC A;  4HEB A;  2E5X A;  4P0U A;  3S86 A;  1ZNO A;  4LU1 A;  2MJP A;  4P0E A;  1U5W A;  2DVP A;  2Q16 A;  1ZWY A;  3TQU A;  2ZTI A;  2DVO A;  2CAR A;  2I5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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