3SE5A

Fic protein from neisseria meningitidis mutant delta8 in complex with amppnp
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
155
structure length
155
Chain Sequence
SIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
molecule keywords Cell filamentation protein Fic-related protein
total genus 60
structure length 155
sequence length 155
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3se5A00
2VY3A 5JFZA 4XI8A 2F6SA 4LU4A 4X2CA 4X2EA 4X2DA 3N3UA 3S6AA 4M16A 3SN9A 2VZAA 2G03A 3ZC7A 5EU0A 2JK8A 4N67A 5JJ7A 5CMTA 4U0UA 3ZCBA 4PY3A 4U0ZA 5CGLA 4NPSA 4U07A 5CKLA 3CUCA 4U04A 5JJ6A 3SE5A 4U0SA 3ZLMA 3LETA 3SHGA 4ITRA 5JFFA 4WGJA
chains in the Genus database with same CATH superfamily
2VY3A 5JFZA 4XI8A 2F6SA 4LU4A 2NUDA 4X2CA 4X2EA 4X2DA 3N3UA 3S6AA 4M16A 3SN9A 2VZAA 4WGJA 2G03A 1NH1A 3ZC7A 5EU0A 2JK8A 4N67A 5JJ7A 5CMTA 3ZCBA 4PY3A 4U0ZA 5CGLA 4NPSA 4U07A 5CKLA 3CUCA 2NUNA 4U04A 5JJ6A 3SE5A 4U0SA 3ZLMA 3LETA 3SHGA 4ITRA 5JFFA 4U0UA
chains in the Genus database with same CATH topology
2VY3A 5JFZA 4XI8A 2F6SA 4LU4A 4X2CA 4X2EA 4X2DA 3N3UA 3S6AA 4M16A 3SN9A 2VZAA 2G03A 3ZC7A 5EU0A 2JK8A 4N67A 5JJ7A 5CMTA 4U0UA 3ZCBA 4PY3A 4U0ZA 5CGLA 4NPSA 4U07A 5CKLA 3CUCA 4U04A 5JJ6A 3SE5A 4U0SA 3ZLMA 3LETA 3SHGA 4ITRA 5JFFA 4WGJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY3 A;  5JFZ A;  4XI8 A;  2F6S A;  4LU4 A;  4X2C A;  4X2E A;  4X2D A;  3N3U A;  3S6A A;  4M16 A;  3SN9 A;  2VZA A;  2G03 A;  3ZC7 A;  5EU0 A;  2JK8 A;  4N67 A;  5JJ7 A;  5CMT A;  4U0U A;  3ZCB A;  4PY3 A;  4U0Z A;  5CGL A;  4NPS A;  4U07 A;  5CKL A;  3CUC A;  4U04 A;  5JJ6 A;  3SE5 A;  4U0S A;  3ZLM A;  3LET A;  3SHG A;  4ITR A;  5JFF A;  4WGJ A; 
#chains in the Genus database with same CATH topology
 2VY3 A;  5JFZ A;  4XI8 A;  2F6S A;  4LU4 A;  2NUD A;  4X2C A;  4X2E A;  4X2D A;  3N3U A;  3S6A A;  4M16 A;  3SN9 A;  2VZA A;  4WGJ A;  2G03 A;  1NH1 A;  3ZC7 A;  5EU0 A;  2JK8 A;  4N67 A;  5JJ7 A;  5CMT A;  3ZCB A;  4PY3 A;  4U0Z A;  5CGL A;  4NPS A;  4U07 A;  5CKL A;  3CUC A;  2NUN A;  4U04 A;  5JJ6 A;  3SE5 A;  4U0S A;  3ZLM A;  3LET A;  3SHG A;  4ITR A;  5JFF A;  4U0U A; 
#chains in the Genus database with same CATH homology
 2VY3 A;  5JFZ A;  4XI8 A;  2F6S A;  4LU4 A;  4X2C A;  4X2E A;  4X2D A;  3N3U A;  3S6A A;  4M16 A;  3SN9 A;  2VZA A;  2G03 A;  3ZC7 A;  5EU0 A;  2JK8 A;  4N67 A;  5JJ7 A;  5CMT A;  4U0U A;  3ZCB A;  4PY3 A;  4U0Z A;  5CGL A;  4NPS A;  4U07 A;  5CKL A;  3CUC A;  4U04 A;  5JJ6 A;  3SE5 A;  4U0S A;  3ZLM A;  3LET A;  3SHG A;  4ITR A;  5JFF A;  4WGJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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