3SEKB

Crystal structure of the myostatin:follistatin-like 3 complex
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
109
structure length
109
Chain Sequence
DFGLDCDEHSTESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGECEFVFLQKYPHTHLVHQANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Growth/differentiation factor 8
publication title Structure of myostatinfollistatin-like 3: N-terminal domains of follistatin-type molecules exhibit alternate modes of binding.
pubmed doi rcsb
source organism Mus musculus
total genus 16
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3sekB00
1ZKZA 3V2AA 1BJ1V 3MJGA 1JPYA 1HD4A 1FL7B 4ZBNA 5HK5E 3HH2A 4HR9A 1RV6V 3B4VA 1WAQA 1QFWA 2QJAA 5BPUA 1MKKA 1WQ9A 1XWDA 2QCWA 1WQ8A 4BV4L 1BETA 2ARPA 5FV2V 2KD3A 1HCFA 4HQXA 4N1DA 4X1JA 3IJ2A 2BHKA 1BMPA 2GYRA 2XV7A 5BQEB 1LX5A 1MJVA 4YCIC 5JZ7A 1ES7A 1MKGA 5HHXA 5AEJA 3BUKA 4UI2B 1CZ8V 5HK5A 2IFGE 1TZHV 2H62A 3P9WA 4GLSE 3E07A 3SEKB 2PJYA 1REUA 1SG1A 2XACA 1VPPV 2TGIA 1HCNA 4LXSJ 4MPLA 2H64A 1QFWB 2R53A 1WQ9B 1XWDB 1HRPA 1TGKA 3KFDA 1WWWV 1DZ7A 3JVFA 1KTZA 5HHDA 5BQCA 5HHCA 1M4UA 1NYUB 1B98A 3EVSB 5HI3A 2P6AA 3BK3A 2GH0C 2VWEA 2VPFA 2VXSA 4QHUC 3S1BV 5BQ8A 2V5EB 1S4YB 4XPJA 1KLAA 2GYZA 2X1WA 4WPBA 4UHZA 4MIDA 3QTKA 1FZVA 5FV1V 1AOCA 4HQUA 2QR0C 4KV5A 4KXZA 4MQWA 2QCQA 5F3HI 1TZIV 1B8MA 4EDWV 1HCNB 3QB4A 2QJ9A 4HSAA 1LXIA 2QJBA 4KZNA 1HRPB 1KLCA 4AY9A 1E9JA 3RJRA 1AGQA 2FJGV 5E4GA 1BNDA 3BDYV 1TGJA 4FAOA 3EO1C 4QCIC 1TFGA 5BQBA 4EDXV 2X1XE 1PDGA 1KATW 5BQ8B 1B8KA 5HI5A 1BTGA 4UI1A 1SGFB 3MJKA 4UHYA 3V6BA 1VPFA 2ASKA 2ARVA 4MQWB 2R52A 5BQ8D 1FL7A 1QTYR 1B8MB 1REWA 2C7WA 5HHVA 3FUBB 4QAFC 2GNNA 5F3BC 3S1KV 4EAXA 4AY9B 4GLNE 4YCGC 1M4UL 3BMPA 1BNDB 1NYSB 5HI4A 4EC7A 4UI0A 1NT3A 4LXRJ 1FLTV 4ZFFC 2GOOA 5BQEA 4EFVA 2B0UA 2FJHV
chains in the Genus database with same CATH superfamily
1ZKZA 3V2AA 1BJ1V 3MJGA 1JPYA 1HD4A 1FL7B 4ZBNA 5HK5E 3HH2A 4HR9A 1RV6V 3B4VA 1WAQA 1QFWA 2QJAA 5BPUA 1MKKA 1WQ9A 1XWDA 2QCWA 1WQ8A 4BV4L 1BETA 2ARPA 5FV2V 2KD3A 1HCFA 4HQXA 4N1DA 4X1JA 3IJ2A 2BHKA 1BMPA 2GYRA 2XV7A 5BQEB 1LX5A 1MJVA 4YCIC 5JZ7A 1ES7A 1MKGA 5HHXA 5AEJA 3BUKA 4UI2B 1CZ8V 5HK5A 2IFGE 1TZHV 2H62A 3P9WA 4GLSE 3E07A 3SEKB 2PJYA 1REUA 1SG1A 2XACA 1VPPV 2TGIA 1HCNA 4LXSJ 4MPLA 2H64A 1QFWB 2R53A 1WQ9B 1XWDB 1HRPA 1TGKA 3KFDA 1WWWV 1DZ7A 3JVFA 1KTZA 5HHDA 5BQCA 5HHCA 1M4UA 1NYUB 1B98A 3EVSB 5HI3A 2P6AA 3BK3A 2GH0C 2VWEA 2VPFA 2VXSA 4QHUC 3S1BV 5BQ8A 2V5EB 1S4YB 4XPJA 1KLAA 2GYZA 2X1WA 4WPBA 4UHZA 4MIDA 3QTKA 1FZVA 5FV1V 1AOCA 4HQUA 2QR0C 4KV5A 4KXZA 4MQWA 2QCQA 5F3HI 1TZIV 1B8MA 4EDWV 1HCNB 3QB4A 2QJ9A 4HSAA 1LXIA 2QJBA 4KZNA 1HRPB 1KLCA 4AY9A 1E9JA 3RJRA 1AGQA 2FJGV 5E4GA 1BNDA 3BDYV 1TGJA 4FAOA 3EO1C 4QCIC 1TFGA 5BQBA 4EDXV 2X1XE 1PDGA 1KATW 5BQ8B 1B8KA 5HI5A 1BTGA 4UI1A 1SGFB 3MJKA 4UHYA 3V6BA 1VPFA 2ASKA 2ARVA 4MQWB 2R52A 5BQ8D 1FL7A 1QTYR 1B8MB 1REWA 2C7WA 5HHVA 3FUBB 4QAFC 2GNNA 5F3BC 3S1KV 4EAXA 4AY9B 4GLNE 4YCGC 1M4UL 3BMPA 1BNDB 1NYSB 5HI4A 4EC7A 4UI0A 1NT3A 4LXRJ 1FLTV 4ZFFC 2GOOA 5BQEA 4EFVA 2B0UA 2FJHV
chains in the Genus database with same CATH topology
1ZKZA 3V2AA 1BJ1V 3MJGA 1JPYA 1HD4A 1FL7B 4ZBNA 5HK5E 3HH2A 4HR9A 1RV6V 3B4VA 1WAQA 1QFWA 2QJAA 5BPUA 1MKKA 1WQ9A 1XWDA 2QCWA 1WQ8A 4BV4L 1BETA 2ARPA 5FV2V 2KD3A 1HCFA 4HQXA 4N1DA 4X1JA 3IJ2A 2BHKA 1BMPA 2GYRA 2XV7A 5BQEB 1LX5A 1MJVA 4YCIC 5JZ7A 1ES7A 1MKGA 5HHXA 5AEJA 3BUKA 4UI2B 1CZ8V 5HK5A 2IFGE 1TZHV 2H62A 3P9WA 4GLSE 3E07A 3SEKB 2PJYA 1REUA 1SG1A 2XACA 1VPPV 2TGIA 1HCNA 4LXSJ 4MPLA 2H64A 1QFWB 2R53A 1WQ9B 1XWDB 1HRPA 1TGKA 3KFDA 1WWWV 1DZ7A 3JVFA 1KTZA 5HHDA 5BQCA 5HHCA 1M4UA 1NYUB 1B98A 3EVSB 5HI3A 2P6AA 3BK3A 2GH0C 2VWEA 2VPFA 2VXSA 4QHUC 3S1BV 5BQ8A 2V5EB 1S4YB 4XPJA 1KLAA 2GYZA 2X1WA 4WPBA 4UHZA 4MIDA 3QTKA 1FZVA 5FV1V 1AOCA 4HQUA 2QR0C 4KV5A 4KXZA 4MQWA 2QCQA 5F3HI 1TZIV 1B8MA 4EDWV 1HCNB 3QB4A 2QJ9A 4HSAA 1LXIA 2QJBA 4KZNA 1HRPB 1KLCA 4AY9A 1E9JA 3RJRA 1AGQA 2FJGV 5E4GA 1BNDA 3BDYV 1TGJA 4FAOA 3EO1C 4QCIC 1TFGA 5BQBA 4EDXV 2X1XE 1PDGA 1KATW 5BQ8B 1B8KA 5HI5A 1BTGA 4UI1A 1SGFB 3MJKA 4UHYA 3V6BA 1VPFA 2ASKA 2ARVA 4MQWB 2R52A 5BQ8D 1FL7A 1QTYR 1B8MB 1REWA 2C7WA 5HHVA 3FUBB 4QAFC 2GNNA 5F3BC 3S1KV 4EAXA 4AY9B 4GLNE 4YCGC 1M4UL 3BMPA 1BNDB 1NYSB 5HI4A 4EC7A 4UI0A 1NT3A 4LXRJ 1FLTV 4ZFFC 2GOOA 5BQEA 4EFVA 2B0UA 2FJHV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZKZ A;  3V2A A;  1BJ1 V;  3MJG A;  1JPY A;  1HD4 A;  1FL7 B;  4ZBN A;  5HK5 E;  3HH2 A;  4HR9 A;  1RV6 V;  3B4V A;  1WAQ A;  1QFW A;  2QJA A;  5BPU A;  1MKK A;  1WQ9 A;  1XWD A;  2QCW A;  1WQ8 A;  4BV4 L;  1BET A;  2ARP A;  5FV2 V;  2KD3 A;  1HCF A;  4HQX A;  4N1D A;  4X1J A;  3IJ2 A;  2BHK A;  1BMP A;  2GYR A;  2XV7 A;  5BQE B;  1LX5 A;  1MJV A;  4YCI C;  5JZ7 A;  1ES7 A;  1MKG A;  5HHX A;  5AEJ A;  3BUK A;  4UI2 B;  1CZ8 V;  5HK5 A;  2IFG E;  1TZH V;  2H62 A;  3P9W A;  4GLS E;  3E07 A;  3SEK B;  2PJY A;  1REU A;  1SG1 A;  2XAC A;  1VPP V;  2TGI A;  1HCN A;  4LXS J;  4MPL A;  2H64 A;  1QFW B;  2R53 A;  1WQ9 B;  1XWD B;  1HRP A;  1TGK A;  3KFD A;  1WWW V;  1DZ7 A;  3JVF A;  1KTZ A;  5HHD A;  5BQC A;  5HHC A;  1M4U A;  1NYU B;  1B98 A;  3EVS B;  5HI3 A;  2P6A A;  3BK3 A;  2GH0 C;  2VWE A;  2VPF A;  2VXS A;  4QHU C;  3S1B V;  5BQ8 A;  2V5E B;  1S4Y B;  4XPJ A;  1KLA A;  2GYZ A;  2X1W A;  4WPB A;  4UHZ A;  4MID A;  3QTK A;  1FZV A;  5FV1 V;  1AOC A;  4HQU A;  2QR0 C;  4KV5 A;  4KXZ A;  4MQW A;  2QCQ A;  5F3H I;  1TZI V;  1B8M A;  4EDW V;  1HCN B;  3QB4 A;  2QJ9 A;  4HSA A;  1LXI A;  2QJB A;  4KZN A;  1HRP B;  1KLC A;  4AY9 A;  1E9J A;  3RJR A;  1AGQ A;  2FJG V;  5E4G A;  1BND A;  3BDY V;  1TGJ A;  4FAO A;  3EO1 C;  4QCI C;  1TFG A;  5BQB A;  4EDX V;  2X1X E;  1PDG A;  1KAT W;  5BQ8 B;  1B8K A;  5HI5 A;  1BTG A;  4UI1 A;  1SGF B;  3MJK A;  4UHY A;  3V6B A;  1VPF A;  2ASK A;  2ARV A;  4MQW B;  2R52 A;  5BQ8 D;  1FL7 A;  1QTY R;  1B8M B;  1REW A;  2C7W A;  5HHV A;  3FUB B;  4QAF C;  2GNN A;  5F3B C;  3S1K V;  4EAX A;  4AY9 B;  4GLN E;  4YCG C;  1M4U L;  3BMP A;  1BND B;  1NYS B;  5HI4 A;  4EC7 A;  4UI0 A;  1NT3 A;  4LXR J;  1FLT V;  4ZFF C;  2GOO A;  5BQE A;  4EFV A;  2B0U A;  2FJH V; 
#chains in the Genus database with same CATH topology
 1ZKZ A;  3V2A A;  1BJ1 V;  3MJG A;  1JPY A;  1HD4 A;  1FL7 B;  4ZBN A;  5HK5 E;  3HH2 A;  4HR9 A;  1RV6 V;  3B4V A;  1WAQ A;  1QFW A;  2QJA A;  5BPU A;  1MKK A;  1WQ9 A;  1XWD A;  2QCW A;  1WQ8 A;  4BV4 L;  1BET A;  2ARP A;  5FV2 V;  2KD3 A;  1HCF A;  4HQX A;  4N1D A;  4X1J A;  3IJ2 A;  2BHK A;  1BMP A;  2GYR A;  2XV7 A;  5BQE B;  1LX5 A;  1MJV A;  4YCI C;  5JZ7 A;  1ES7 A;  1MKG A;  5HHX A;  5AEJ A;  3BUK A;  4UI2 B;  1CZ8 V;  5HK5 A;  2IFG E;  1TZH V;  2H62 A;  3P9W A;  4GLS E;  3E07 A;  3SEK B;  2PJY A;  1REU A;  1SG1 A;  2XAC A;  1VPP V;  2TGI A;  1HCN A;  4LXS J;  4MPL A;  2H64 A;  1QFW B;  2R53 A;  1WQ9 B;  1XWD B;  1HRP A;  1TGK A;  3KFD A;  1WWW V;  1DZ7 A;  3JVF A;  1KTZ A;  5HHD A;  5BQC A;  5HHC A;  1M4U A;  1NYU B;  1B98 A;  3EVS B;  5HI3 A;  2P6A A;  3BK3 A;  2GH0 C;  2VWE A;  2VPF A;  2VXS A;  4QHU C;  3S1B V;  5BQ8 A;  2V5E B;  1S4Y B;  4XPJ A;  1KLA A;  2GYZ A;  2X1W A;  4WPB A;  4UHZ A;  4MID A;  3QTK A;  1FZV A;  5FV1 V;  1AOC A;  4HQU A;  2QR0 C;  4KV5 A;  4KXZ A;  4MQW A;  2QCQ A;  5F3H I;  1TZI V;  1B8M A;  4EDW V;  1HCN B;  3QB4 A;  2QJ9 A;  4HSA A;  1LXI A;  2QJB A;  4KZN A;  1HRP B;  1KLC A;  4AY9 A;  1E9J A;  3RJR A;  1AGQ A;  2FJG V;  5E4G A;  1BND A;  3BDY V;  1TGJ A;  4FAO A;  3EO1 C;  4QCI C;  1TFG A;  5BQB A;  4EDX V;  2X1X E;  1PDG A;  1KAT W;  5BQ8 B;  1B8K A;  5HI5 A;  1BTG A;  4UI1 A;  1SGF B;  3MJK A;  4UHY A;  3V6B A;  1VPF A;  2ASK A;  2ARV A;  4MQW B;  2R52 A;  5BQ8 D;  1FL7 A;  1QTY R;  1B8M B;  1REW A;  2C7W A;  5HHV A;  3FUB B;  4QAF C;  2GNN A;  5F3B C;  3S1K V;  4EAX A;  4AY9 B;  4GLN E;  4YCG C;  1M4U L;  3BMP A;  1BND B;  1NYS B;  5HI4 A;  4EC7 A;  4UI0 A;  1NT3 A;  4LXR J;  1FLT V;  4ZFF C;  2GOO A;  5BQE A;  4EFV A;  2B0U A;  2FJH V; 
#chains in the Genus database with same CATH homology
 1ZKZ A;  3V2A A;  1BJ1 V;  3MJG A;  1JPY A;  1HD4 A;  1FL7 B;  4ZBN A;  5HK5 E;  3HH2 A;  4HR9 A;  1RV6 V;  3B4V A;  1WAQ A;  1QFW A;  2QJA A;  5BPU A;  1MKK A;  1WQ9 A;  1XWD A;  2QCW A;  1WQ8 A;  4BV4 L;  1BET A;  2ARP A;  5FV2 V;  2KD3 A;  1HCF A;  4HQX A;  4N1D A;  4X1J A;  3IJ2 A;  2BHK A;  1BMP A;  2GYR A;  2XV7 A;  5BQE B;  1LX5 A;  1MJV A;  4YCI C;  5JZ7 A;  1ES7 A;  1MKG A;  5HHX A;  5AEJ A;  3BUK A;  4UI2 B;  1CZ8 V;  5HK5 A;  2IFG E;  1TZH V;  2H62 A;  3P9W A;  4GLS E;  3E07 A;  3SEK B;  2PJY A;  1REU A;  1SG1 A;  2XAC A;  1VPP V;  2TGI A;  1HCN A;  4LXS J;  4MPL A;  2H64 A;  1QFW B;  2R53 A;  1WQ9 B;  1XWD B;  1HRP A;  1TGK A;  3KFD A;  1WWW V;  1DZ7 A;  3JVF A;  1KTZ A;  5HHD A;  5BQC A;  5HHC A;  1M4U A;  1NYU B;  1B98 A;  3EVS B;  5HI3 A;  2P6A A;  3BK3 A;  2GH0 C;  2VWE A;  2VPF A;  2VXS A;  4QHU C;  3S1B V;  5BQ8 A;  2V5E B;  1S4Y B;  4XPJ A;  1KLA A;  2GYZ A;  2X1W A;  4WPB A;  4UHZ A;  4MID A;  3QTK A;  1FZV A;  5FV1 V;  1AOC A;  4HQU A;  2QR0 C;  4KV5 A;  4KXZ A;  4MQW A;  2QCQ A;  5F3H I;  1TZI V;  1B8M A;  4EDW V;  1HCN B;  3QB4 A;  2QJ9 A;  4HSA A;  1LXI A;  2QJB A;  4KZN A;  1HRP B;  1KLC A;  4AY9 A;  1E9J A;  3RJR A;  1AGQ A;  2FJG V;  5E4G A;  1BND A;  3BDY V;  1TGJ A;  4FAO A;  3EO1 C;  4QCI C;  1TFG A;  5BQB A;  4EDX V;  2X1X E;  1PDG A;  1KAT W;  5BQ8 B;  1B8K A;  5HI5 A;  1BTG A;  4UI1 A;  1SGF B;  3MJK A;  4UHY A;  3V6B A;  1VPF A;  2ASK A;  2ARV A;  4MQW B;  2R52 A;  5BQ8 D;  1FL7 A;  1QTY R;  1B8M B;  1REW A;  2C7W A;  5HHV A;  3FUB B;  4QAF C;  2GNN A;  5F3B C;  3S1K V;  4EAX A;  4AY9 B;  4GLN E;  4YCG C;  1M4U L;  3BMP A;  1BND B;  1NYS B;  5HI4 A;  4EC7 A;  4UI0 A;  1NT3 A;  4LXR J;  1FLT V;  4ZFF C;  2GOO A;  5BQE A;  4EFV A;  2B0U A;  2FJH V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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