3SELX

Ppca m58n mutant
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
71
structure length
71
Chain Sequence
ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEENKKGPTKCGECHKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C7
publication title Pitfalls in the interpretation of structural changes in mutant proteins from crystal structures.
pubmed doi rcsb
source organism Geobacter sulfurreducens
total genus 14
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2011-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 3selX00
1L3OA 3H34A 2EWKA 2LDOA 1A2IA 3SELX 4HDLA 1J0PA 1OFWA 4HAJA 1GWSA 1NEWA 1WR5A 4HB8A 1IT1A 1AQEA 2LZZA 4HBFA 1OFYA 2E84A 1UPDA 1CZJA 2KSUA 2YYWA 1W7OA 3SJ4X 1DUWA 1UP9A 1LM2A 1GMBA 1GYOA 3SJ0X 2Z47A 2CY3A 2EWUA 3CAOA 1MDVA 3H4NA 3CYRA 2KMYA 1OS6A 1I77A 3H33A 2BQ4A 2FFNA 1GM4A 3SJ1X 1WADA 1F22A 2CDVA 1QN0A 2EWIA 4HB6A 2BPNA 1HH5A 3OUEA 3OUQA 2A3MA 1EHJA 19HCA 3OV0A 3BXUA 2CVCA 1J0OA 1Z1NX 2N91A 1H29A 1KWJA 1RWJA 2YYXA 2MZ9A 2A3PA 4HC3A 2CYMA 2YXCA 3CARA 1QN1A 2CTHA
chains in the Genus database with same CATH superfamily
1L3OA 3H34A 2EWKA 2LDOA 1A2IA 3SELX 4HDLA 1J0PA 1OFWA 4HAJA 1GWSA 1NEWA 1WR5A 4HB8A 1IT1A 1AQEA 2LZZA 4HBFA 1OFYA 2E84A 1UPDA 1CZJA 2KSUA 2YYWA 1W7OA 3SJ4X 1DUWA 1UP9A 1LM2A 1GMBA 1GYOA 3SJ0X 2Z47A 2CY3A 2EWUA 3CAOA 1MDVA 3H4NA 3CYRA 2KMYA 1OS6A 1I77A 3H33A 2BQ4A 2FFNA 1GM4A 3SJ1X 1WADA 1F22A 2CDVA 1QN0A 2EWIA 4HB6A 2BPNA 1HH5A 3OUEA 3OUQA 2A3MA 1EHJA 19HCA 3OV0A 3BXUA 2CVCA 1J0OA 1Z1NX 2N91A 1H29A 1KWJA 1RWJA 2YYXA 2MZ9A 2A3PA 4HC3A 2CYMA 2YXCA 3CARA 1QN1A 2CTHA
chains in the Genus database with same CATH topology
1L3OA 3H34A 2EWKA 2LDOA 1A2IA 3SELX 4HDLA 1J0PA 1OFWA 4HAJA 1GWSA 1NEWA 1WR5A 4HB8A 1IT1A 1AQEA 2LZZA 4HBFA 1OFYA 2E84A 1UPDA 1CZJA 2KSUA 2YYWA 1W7OA 3SJ4X 1DUWA 1UP9A 1LM2A 1GMBA 1GYOA 3SJ0X 2Z47A 2CY3A 2EWUA 3CAOA 1MDVA 3H4NA 3CYRA 2KMYA 1OS6A 1I77A 3H33A 2BQ4A 2FFNA 1GM4A 3SJ1X 1WADA 1F22A 2CDVA 1QN0A 2EWIA 4HB6A 2BPNA 1HH5A 3OUEA 3OUQA 2A3MA 1EHJA 19HCA 3OV0A 3BXUA 2CVCA 1J0OA 1Z1NX 2N91A 1H29A 1KWJA 1RWJA 2YYXA 2MZ9A 2A3PA 4HC3A 2CYMA 2YXCA 3CARA 1QN1A 2CTHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L3O A;  3H34 A;  2EWK A;  2LDO A;  1A2I A;  3SEL X;  4HDL A;  1J0P A;  1OFW A;  4HAJ A;  1GWS A;  1NEW A;  1WR5 A;  4HB8 A;  1IT1 A;  1AQE A;  2LZZ A;  4HBF A;  1OFY A;  2E84 A;  1UPD A;  1CZJ A;  2KSU A;  2YYW A;  1W7O A;  3SJ4 X;  1DUW A;  1UP9 A;  1LM2 A;  1GMB A;  1GYO A;  3SJ0 X;  2Z47 A;  2CY3 A;  2EWU A;  3CAO A;  1MDV A;  3H4N A;  3CYR A;  2KMY A;  1OS6 A;  1I77 A;  3H33 A;  2BQ4 A;  2FFN A;  1GM4 A;  3SJ1 X;  1WAD A;  1F22 A;  2CDV A;  1QN0 A;  2EWI A;  4HB6 A;  2BPN A;  1HH5 A;  3OUE A;  3OUQ A;  2A3M A;  1EHJ A;  19HC A;  3OV0 A;  3BXU A;  2CVC A;  1J0O A;  1Z1N X;  2N91 A;  1H29 A;  1KWJ A;  1RWJ A;  2YYX A;  2MZ9 A;  2A3P A;  4HC3 A;  2CYM A;  2YXC A;  3CAR A;  1QN1 A;  2CTH A; 
#chains in the Genus database with same CATH topology
 1L3O A;  3H34 A;  2EWK A;  2LDO A;  1A2I A;  3SEL X;  4HDL A;  1J0P A;  1OFW A;  4HAJ A;  1GWS A;  1NEW A;  1WR5 A;  4HB8 A;  1IT1 A;  1AQE A;  2LZZ A;  4HBF A;  1OFY A;  2E84 A;  1UPD A;  1CZJ A;  2KSU A;  2YYW A;  1W7O A;  3SJ4 X;  1DUW A;  1UP9 A;  1LM2 A;  1GMB A;  1GYO A;  3SJ0 X;  2Z47 A;  2CY3 A;  2EWU A;  3CAO A;  1MDV A;  3H4N A;  3CYR A;  2KMY A;  1OS6 A;  1I77 A;  3H33 A;  2BQ4 A;  2FFN A;  1GM4 A;  3SJ1 X;  1WAD A;  1F22 A;  2CDV A;  1QN0 A;  2EWI A;  4HB6 A;  2BPN A;  1HH5 A;  3OUE A;  3OUQ A;  2A3M A;  1EHJ A;  19HC A;  3OV0 A;  3BXU A;  2CVC A;  1J0O A;  1Z1N X;  2N91 A;  1H29 A;  1KWJ A;  1RWJ A;  2YYX A;  2MZ9 A;  2A3P A;  4HC3 A;  2CYM A;  2YXC A;  3CAR A;  1QN1 A;  2CTH A; 
#chains in the Genus database with same CATH homology
 1L3O A;  3H34 A;  2EWK A;  2LDO A;  1A2I A;  3SEL X;  4HDL A;  1J0P A;  1OFW A;  4HAJ A;  1GWS A;  1NEW A;  1WR5 A;  4HB8 A;  1IT1 A;  1AQE A;  2LZZ A;  4HBF A;  1OFY A;  2E84 A;  1UPD A;  1CZJ A;  2KSU A;  2YYW A;  1W7O A;  3SJ4 X;  1DUW A;  1UP9 A;  1LM2 A;  1GMB A;  1GYO A;  3SJ0 X;  2Z47 A;  2CY3 A;  2EWU A;  3CAO A;  1MDV A;  3H4N A;  3CYR A;  2KMY A;  1OS6 A;  1I77 A;  3H33 A;  2BQ4 A;  2FFN A;  1GM4 A;  3SJ1 X;  1WAD A;  1F22 A;  2CDV A;  1QN0 A;  2EWI A;  4HB6 A;  2BPN A;  1HH5 A;  3OUE A;  3OUQ A;  2A3M A;  1EHJ A;  19HC A;  3OV0 A;  3BXU A;  2CVC A;  1J0O A;  1Z1N X;  2N91 A;  1H29 A;  1KWJ A;  1RWJ A;  2YYX A;  2MZ9 A;  2A3P A;  4HC3 A;  2CYM A;  2YXC A;  3CAR A;  1QN1 A;  2CTH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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