3SFDD

Crystal structure of porcine mitochondrial respiratory complex ii bound with oxaloacetate and pentachlorophenol
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
102
structure length
102
Chain Sequence
SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
publication title Thiabendazole inhibits ubiquinone reduction activity of mitochondrial respiratory complex II via a water molecule mediated binding feature.
pubmed doi rcsb
total genus 40
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2011-06-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3sfdD00
2WQYD 3AE6D 1YQ3D 3AEFC 5C3JD 1NEND 3SFDC 1QLBC 2ACZD 3ABVC 3P4RD 1KF6C 3AEAD 3AE9D 3AEGC 2WU5C 3AECD 1L0VC 1YQ4D 3AE4D 3AEBD 2WDQD 2WU2D 4YTMC 4YSZD 3AE8D 1NEKD 2WQYC 1ZP0D 3AE6C 1YQ3C 2B76C 4YTPD 5C3JC 1NENC 4YTNC 5C2TC 1ZOYD 3P4QD 1KFYC 4YSYD 3AEAC 3AE9C 3AE5D 3P4SC 3P4PD 3AE3D 4YXDD 3AEBC 2WDQC 4YSZC 3AE8C 3VRAD 3VR9D 3AEED 4YSXD 1ZP0C 3CIRD 3AE2D 4YTPC 1ZOYC 3P4QC 4YSYC 2H89D 2BS2C 3AE5C 3AE1D 3AEDD 2BS3C 3VR8D 2WS3D 3AE3C 2ACZC 4YXDC 3P4RC 2H88D 3AECC 3VRAC 4KX6D 1YQ4C 3AEEC 3AEFD 3AE4C 3CIRC 3AE2C 2WP9D 2WU2C 3ABVD 1NEKC 2FBWD 3AEGD 3VRBD 2WDRD 2WDVD 3AE1C 3AEDC 4YTMD 3VR8C 2H88C 3AE7D 3SFED 4KX6C 2B76D 4YT0D 3P4PC 4YTND 5C2TD 1KFYD 2BS4C 2WP9C 2FBWC 3VR9C 3VRBC 2WDRC 4YSXC 3P4SD 2WDVC 3SFDD 1KF6D 1E7PC 2WU5D 2H89C 1L0VD 3AE7C 3SFEC 4YT0C 2WS3C
chains in the Genus database with same CATH superfamily
4DHIB 2WQYD 3AE6D 1YQ3D 3AEFC 4LDTA 5C3JD 1NEND 3SFDC 1QLBC 2ACZD 3ABVC 3P4RD 1KF6C 3AEAD 3AE9D 3AEGC 2WU5C 3AECD 1L0VC 2ZFYA 1YQ4D 3AE4D 3AEBD 2WDQD 2WU2D 4YTMC 4YSZD 3AE8D 1NEKD 2WQYC 1TFFA 1ZP0D 3AE6C 1YQ3C 2B76C 4I6LA 4YTPD 5C3JC 1NENC 4YTNC 5C2TC 1ZOYD 3P4QD 1KFYC 4YSYD 3AEAC 4DDGA 3AE9C 4DDIA 3AE5D 3P4SC 3P4PD 3AE3D 4YXDD 3AEBC 2WDQC 4YSZC 3AE8C 3VRAD 3VR9D 3AEED 4YSXD 1ZP0C 3CIRD 3AE2D 4YTPC 1ZOYC 3P4QC 4YSYC 2H89D 2BS2C 3AE5C 3AE1D 3AEDD 2BS3C 3VR8D 2WS3D 3AE3C 2ACZC 4YXDC 3P4RC 2H88D 3AECC 3VRAC 4DHZA 4KX6D 1YQ4C 3AEEC 3AEFD 3AE4C 3CIRC 3AE2C 2WP9D 2WU2C 3ABVD 1NEKC 2FBWD 3AEGD 3VONA 3VRBD 2WDRD 2WDVD 4DHJA 3AE1C 4FJVA 3AEDC 4YTMD 3VR8C 2H88C 3AE7D 3SFED 4KX6C 2B76D 4YT0D 3P4PC 4YTND 5C2TD 1KFYD 2BS4C 2WP9C 2FBWC 3VR9C 3VRBC 2WDRC 4YSXC 3P4SD 2WDVC 3SFDD 1KF6D 1E7PC 2WU5D 2H89C 1L0VD 3AE7C 3SFEC 4YT0C 2WS3C
chains in the Genus database with same CATH topology
2WQYD 3AE6D 1YQ3D 3AEFC 5C3JD 1NEND 3SFDC 1QLBC 2ACZD 3ABVC 3P4RD 1KF6C 3AEAD 3AE9D 3AEGC 2WU5C 3AECD 1L0VC 1YQ4D 3AE4D 3AEBD 2WDQD 2WU2D 4YTMC 4YSZD 3AE8D 1NEKD 2WQYC 1ZP0D 3AE6C 1YQ3C 2B76C 4YTPD 5C3JC 1NENC 4YTNC 5C2TC 1ZOYD 3P4QD 1KFYC 4YSYD 3AEAC 3AE9C 3AE5D 3P4SC 3P4PD 3AE3D 4YXDD 3AEBC 2WDQC 4YSZC 3AE8C 3VRAD 3VR9D 3AEED 4YSXD 1ZP0C 3CIRD 3AE2D 4YTPC 1ZOYC 3P4QC 4YSYC 2H89D 2BS2C 3AE5C 3AE1D 3AEDD 2BS3C 3VR8D 2WS3D 3AE3C 2ACZC 4YXDC 3P4RC 2H88D 3AECC 3VRAC 4KX6D 1YQ4C 3AEEC 3AEFD 3AE4C 3CIRC 3AE2C 2WP9D 2WU2C 3ABVD 1NEKC 2FBWD 3AEGD 3VRBD 2WDRD 2WDVD 3AE1C 3AEDC 4YTMD 3VR8C 2H88C 3AE7D 3SFED 4KX6C 2B76D 4YT0D 3P4PC 4YTND 5C2TD 1KFYD 2BS4C 2WP9C 2FBWC 3VR9C 3VRBC 2WDRC 4YSXC 3P4SD 2WDVC 3SFDD 1KF6D 1E7PC 2WU5D 2H89C 1L0VD 3AE7C 3SFEC 4YT0C 2WS3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WQY D;  3AE6 D;  1YQ3 D;  3AEF C;  5C3J D;  1NEN D;  3SFD C;  1QLB C;  2ACZ D;  3ABV C;  3P4R D;  1KF6 C;  3AEA D;  3AE9 D;  3AEG C;  2WU5 C;  3AEC D;  1L0V C;  1YQ4 D;  3AE4 D;  3AEB D;  2WDQ D;  2WU2 D;  4YTM C;  4YSZ D;  3AE8 D;  1NEK D;  2WQY C;  1ZP0 D;  3AE6 C;  1YQ3 C;  2B76 C;  4YTP D;  5C3J C;  1NEN C;  4YTN C;  5C2T C;  1ZOY D;  3P4Q D;  1KFY C;  4YSY D;  3AEA C;  3AE9 C;  3AE5 D;  3P4S C;  3P4P D;  3AE3 D;  4YXD D;  3AEB C;  2WDQ C;  4YSZ C;  3AE8 C;  3VRA D;  3VR9 D;  3AEE D;  4YSX D;  1ZP0 C;  3CIR D;  3AE2 D;  4YTP C;  1ZOY C;  3P4Q C;  4YSY C;  2H89 D;  2BS2 C;  3AE5 C;  3AE1 D;  3AED D;  2BS3 C;  3VR8 D;  2WS3 D;  3AE3 C;  2ACZ C;  4YXD C;  3P4R C;  2H88 D;  3AEC C;  3VRA C;  4KX6 D;  1YQ4 C;  3AEE C;  3AEF D;  3AE4 C;  3CIR C;  3AE2 C;  2WP9 D;  2WU2 C;  3ABV D;  1NEK C;  2FBW D;  3AEG D;  3VRB D;  2WDR D;  2WDV D;  3AE1 C;  3AED C;  4YTM D;  3VR8 C;  2H88 C;  3AE7 D;  3SFE D;  4KX6 C;  2B76 D;  4YT0 D;  3P4P C;  4YTN D;  5C2T D;  1KFY D;  2BS4 C;  2WP9 C;  2FBW C;  3VR9 C;  3VRB C;  2WDR C;  4YSX C;  3P4S D;  2WDV C;  3SFD D;  1KF6 D;  1E7P C;  2WU5 D;  2H89 C;  1L0V D;  3AE7 C;  3SFE C;  4YT0 C;  2WS3 C; 
#chains in the Genus database with same CATH topology
 4DHI B;  2WQY D;  3AE6 D;  1YQ3 D;  3AEF C;  4LDT A;  5C3J D;  1NEN D;  3SFD C;  1QLB C;  2ACZ D;  3ABV C;  3P4R D;  1KF6 C;  3AEA D;  3AE9 D;  3AEG C;  2WU5 C;  3AEC D;  1L0V C;  2ZFY A;  1YQ4 D;  3AE4 D;  3AEB D;  2WDQ D;  2WU2 D;  4YTM C;  4YSZ D;  3AE8 D;  1NEK D;  2WQY C;  1TFF A;  1ZP0 D;  3AE6 C;  1YQ3 C;  2B76 C;  4I6L A;  4YTP D;  5C3J C;  1NEN C;  4YTN C;  5C2T C;  1ZOY D;  3P4Q D;  1KFY C;  4YSY D;  3AEA C;  4DDG A;  3AE9 C;  4DDI A;  3AE5 D;  3P4S C;  3P4P D;  3AE3 D;  4YXD D;  3AEB C;  2WDQ C;  4YSZ C;  3AE8 C;  3VRA D;  3VR9 D;  3AEE D;  4YSX D;  1ZP0 C;  3CIR D;  3AE2 D;  4YTP C;  1ZOY C;  3P4Q C;  4YSY C;  2H89 D;  2BS2 C;  3AE5 C;  3AE1 D;  3AED D;  2BS3 C;  3VR8 D;  2WS3 D;  3AE3 C;  2ACZ C;  4YXD C;  3P4R C;  2H88 D;  3AEC C;  3VRA C;  4DHZ A;  4KX6 D;  1YQ4 C;  3AEE C;  3AEF D;  3AE4 C;  3CIR C;  3AE2 C;  2WP9 D;  2WU2 C;  3ABV D;  1NEK C;  2FBW D;  3AEG D;  3VON A;  3VRB D;  2WDR D;  2WDV D;  4DHJ A;  3AE1 C;  4FJV A;  3AED C;  4YTM D;  3VR8 C;  2H88 C;  3AE7 D;  3SFE D;  4KX6 C;  2B76 D;  4YT0 D;  3P4P C;  4YTN D;  5C2T D;  1KFY D;  2BS4 C;  2WP9 C;  2FBW C;  3VR9 C;  3VRB C;  2WDR C;  4YSX C;  3P4S D;  2WDV C;  3SFD D;  1KF6 D;  1E7P C;  2WU5 D;  2H89 C;  1L0V D;  3AE7 C;  3SFE C;  4YT0 C;  2WS3 C; 
#chains in the Genus database with same CATH homology
 2WQY D;  3AE6 D;  1YQ3 D;  3AEF C;  5C3J D;  1NEN D;  3SFD C;  1QLB C;  2ACZ D;  3ABV C;  3P4R D;  1KF6 C;  3AEA D;  3AE9 D;  3AEG C;  2WU5 C;  3AEC D;  1L0V C;  1YQ4 D;  3AE4 D;  3AEB D;  2WDQ D;  2WU2 D;  4YTM C;  4YSZ D;  3AE8 D;  1NEK D;  2WQY C;  1ZP0 D;  3AE6 C;  1YQ3 C;  2B76 C;  4YTP D;  5C3J C;  1NEN C;  4YTN C;  5C2T C;  1ZOY D;  3P4Q D;  1KFY C;  4YSY D;  3AEA C;  3AE9 C;  3AE5 D;  3P4S C;  3P4P D;  3AE3 D;  4YXD D;  3AEB C;  2WDQ C;  4YSZ C;  3AE8 C;  3VRA D;  3VR9 D;  3AEE D;  4YSX D;  1ZP0 C;  3CIR D;  3AE2 D;  4YTP C;  1ZOY C;  3P4Q C;  4YSY C;  2H89 D;  2BS2 C;  3AE5 C;  3AE1 D;  3AED D;  2BS3 C;  3VR8 D;  2WS3 D;  3AE3 C;  2ACZ C;  4YXD C;  3P4R C;  2H88 D;  3AEC C;  3VRA C;  4KX6 D;  1YQ4 C;  3AEE C;  3AEF D;  3AE4 C;  3CIR C;  3AE2 C;  2WP9 D;  2WU2 C;  3ABV D;  1NEK C;  2FBW D;  3AEG D;  3VRB D;  2WDR D;  2WDV D;  3AE1 C;  3AED C;  4YTM D;  3VR8 C;  2H88 C;  3AE7 D;  3SFE D;  4KX6 C;  2B76 D;  4YT0 D;  3P4P C;  4YTN D;  5C2T D;  1KFY D;  2BS4 C;  2WP9 C;  2FBW C;  3VR9 C;  3VRB C;  2WDR C;  4YSX C;  3P4S D;  2WDV C;  3SFD D;  1KF6 D;  1E7P C;  2WU5 D;  2H89 C;  1L0V D;  3AE7 C;  3SFE C;  4YT0 C;  2WS3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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