3SHGA

Vbht fic protein from bartonella schoenbuchensis in complex with vbha antitoxin
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
198
structure length
198
Chain Sequence
VRKYEGSNDPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDIVKDNSKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEFT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
pubmed doi rcsb
source organism Bartonella schoenbuchensis r1
molecule tags Transferase/protein binding
molecule keywords VbhT
total genus 75
structure length 198
sequence length 198
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2011-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3shgA00
2VY3A 3ZC7A 4U0UA 4WGJA 5JJ6A 4X2DA 3SN9A 2F6SA 3S6AA 5CKLA 5CGLA 3ZCBA 5JFFA 4M16A 5EU0A 2G03A 4LU4A 4U0SA 4ITRA 4XI8A 5JJ7A 4U07A 2JK8A 4U04A 4X2CA 4U0ZA 3LETA 3ZLMA 3N3UA 5JFZA 2VZAA 4X2EA 5CMTA 3CUCA 4N67A 3SE5A 3SHGA 4NPSA 4PY3A
chains in the Genus database with same CATH superfamily
2VY3A 3ZC7A 4U0UA 4WGJA 5JJ6A 4X2DA 3SN9A 2F6SA 3S6AA 5CKLA 5CGLA 3ZCBA 5JFFA 4M16A 5EU0A 2G03A 4LU4A 2NUNA 2NUDA 4U0SA 4ITRA 4XI8A 5JJ7A 4U07A 2JK8A 4U04A 4X2CA 4U0ZA 3LETA 3ZLMA 1NH1A 3N3UA 2VZAA 4X2EA 5JFZA 5CMTA 3CUCA 4N67A 3SE5A 3SHGA 4NPSA 4PY3A
chains in the Genus database with same CATH topology
2VY3A 3ZC7A 4U0UA 4WGJA 5JJ6A 4X2DA 3SN9A 2F6SA 3S6AA 5CKLA 5CGLA 3ZCBA 5JFFA 4M16A 5EU0A 2G03A 4LU4A 4U0SA 4ITRA 4XI8A 5JJ7A 4U07A 2JK8A 4U04A 4X2CA 4U0ZA 3LETA 3ZLMA 3N3UA 5JFZA 2VZAA 4X2EA 5CMTA 3CUCA 4N67A 3SE5A 3SHGA 4NPSA 4PY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY3 A;  3ZC7 A;  4U0U A;  4WGJ A;  5JJ6 A;  4X2D A;  3SN9 A;  2F6S A;  3S6A A;  5CKL A;  5CGL A;  3ZCB A;  5JFF A;  4M16 A;  5EU0 A;  2G03 A;  4LU4 A;  4U0S A;  4ITR A;  4XI8 A;  5JJ7 A;  4U07 A;  2JK8 A;  4U04 A;  4X2C A;  4U0Z A;  3LET A;  3ZLM A;  3N3U A;  5JFZ A;  2VZA A;  4X2E A;  5CMT A;  3CUC A;  4N67 A;  3SE5 A;  3SHG A;  4NPS A;  4PY3 A; 
#chains in the Genus database with same CATH topology
 2VY3 A;  3ZC7 A;  4U0U A;  4WGJ A;  5JJ6 A;  4X2D A;  3SN9 A;  2F6S A;  3S6A A;  5CKL A;  5CGL A;  3ZCB A;  5JFF A;  4M16 A;  5EU0 A;  2G03 A;  4LU4 A;  2NUN A;  2NUD A;  4U0S A;  4ITR A;  4XI8 A;  5JJ7 A;  4U07 A;  2JK8 A;  4U04 A;  4X2C A;  4U0Z A;  3LET A;  3ZLM A;  1NH1 A;  3N3U A;  2VZA A;  4X2E A;  5JFZ A;  5CMT A;  3CUC A;  4N67 A;  3SE5 A;  3SHG A;  4NPS A;  4PY3 A; 
#chains in the Genus database with same CATH homology
 2VY3 A;  3ZC7 A;  4U0U A;  4WGJ A;  5JJ6 A;  4X2D A;  3SN9 A;  2F6S A;  3S6A A;  5CKL A;  5CGL A;  3ZCB A;  5JFF A;  4M16 A;  5EU0 A;  2G03 A;  4LU4 A;  4U0S A;  4ITR A;  4XI8 A;  5JJ7 A;  4U07 A;  2JK8 A;  4U04 A;  4X2C A;  4U0Z A;  3LET A;  3ZLM A;  3N3U A;  5JFZ A;  2VZA A;  4X2E A;  5CMT A;  3CUC A;  4N67 A;  3SE5 A;  3SHG A;  4NPS A;  4PY3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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