3SIVB

Structure of a hprp31-15.5k-u4atac 5' stem loop complex, dimeric form
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
248
structure length
237
Chain Sequence
EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Splicing/rna
molecule keywords NHP2-like protein 1
publication title Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31.
pubmed doi rcsb
source organism Homo sapiens
total genus 71
structure length 237
sequence length 248
chains with identical sequence E, H, K
ec nomenclature
pdb deposition date 2011-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3sivB02
1NT2B 5GIPA 5GINA 3ICXA 2OZBB 3GQXA 3SIUB 2NNWA 4BY9C 5GIOA 3NVKA 3NVIA 3NMUA 3SIVB 3PLAA 3NVMA 3GQUA
chains in the Genus database with same CATH superfamily
4EMXA 4ZUXV 2XVUA 1MIWA 3V08A 2VUEA 1TXUA 4OR0A 3VQIA 2BXIA 4W4UB 2KBZA 5BPKA 4L9KA 4BY9C 2LQHA 3LU7A 4F5SA 2OT3A 5DBYA 4OT2A 3FWCC 1BKEA 5IJFA 4L9QA 1VZSA 5ID7A 4GG2A 1LOTA 2I2ZA 2XW0A 4LUFA 3FWBC 1MIVA 3FNMA 3NVIA 2DG5A 3LU8A 4ZC6A 4N0FD 5D7GA 3V03A 2GUTA 1IJGA 2DYMA 4LUHA 5FUOA 4FK5B 3V09A 2AJEA 1MM8A 5IIXA 2BXHA 2BXCA 3CX9A 2DBUA 1H5WA 2BXNA 3H3AA 2EFHA 4GDKB 1SB0A 4N0UD 2LOQA 4MBEC 4E99A 1HK5A 5HOZA 5IJEA 1UORA 5GIPA 4GDLB 2NQOA 4TQ1A 4GDXA 3WHQA 3WHRA 4IW1A 3WHSA 1MIYA 2BXGA 2BXLA 2XSIA 1E7GA 4C31B 1JNBA 2ROHA 2XVWA 3KIKA 5GINA 2BXFA 4HGKA 5GIOA 2I30A 1TF0A 2BXKA 2JUHA 3KJLA 1J7EA 2EFDA 3TDLA 4G01A 5B5TA 2Z8JA 2OZBB 1MUHA 3G9KD 4NAWB 4F5UA 4JK4A 4K71A 1HK4A 2BXAA 2DBXA 4I9OA 3H37A 4WA6B 1KDXA 1E7IA 1GNIA 3GQXA 1E7BA 2BX8A 2VDBA 2EFEA 4N3ZA 2LXSA 2BXBA 4ZBRA 3W1SA 1AO6A 4DM0A 4J2VA 2DYOA 4OTTA 5IIUA 3SIVB 4TQ0A 2QMCA 1E78A 1HK2A 4ZBQA 1E7CA 4M70B 2BXPA 1E7FA 2LXTA 3JRYA 3M99C 2NNWA 2XVVA 1GNJA 2Z8IA 2V36A 3GQUA 1O9XA 1HK1A 5IFOA 1FOUA 1HK3A 2AGHB 5ID9A 3B9LA 1J78A 4LB2A 1MA9A 4ZBKA 3PLAA 4ZCGA 3GA9L 2BXQA 4F5TA 2Z8KA 4LA0A 1E7EA 2KWFA 4BKEA 5DQFA 4DHXB 4L8UA 2K0NA 3NVKA 4IW2A 4Z9OA 4K2CA 2DBWA 1E7HA 2BXEA 4S1YA 4G03A 2VUFA 3A73A 5IJ5A 1MUSA 4G04A 1LNSA 3B9MA 3SIUB 2E0XA 4HGMB 4Z69A 4LB9A 2XW1A 3SQJA 1BJ5A 1E7AA 2LQIA 3MHHB 1NT2B 4D7XA 2XVQA 2QM6A 2YDFA 1BM0A 1H9ZA 3MHSB 3NVMA 3UIVA 3ECPA 1KXPD 3BPJA 4FIPB 4PO0A 5GHKA 3ICXA 2QHBA 1VFIA 5IIHA 1HA2A 1N5UA 1KW2A 2BXMA 4FJCB 3A75A 3JQZA 2BXDA 4F5VA 2EFCA 2XMOA 3NMUA 2CKXA 2E0YA 4OTUA 2BXOA 3LU6A
chains in the Genus database with same CATH topology
4EMXA 4ZUXV 2XVUA 1MIWA 3V08A 2VUEA 1TXUA 4OR0A 3VQIA 2BXIA 4W4UB 2KBZA 5BPKA 4L9KA 4BY9C 3LU7A 4F5SA 2OT3A 5DBYA 4OT2A 3FWCC 1BKEA 5IJFA 4L9QA 1VZSA 5ID7A 4GG2A 1LOTA 2I2ZA 2XW0A 4LUFA 3FWBC 1MIVA 3FNMA 3NVIA 2DG5A 3LU8A 4ZC6A 4N0FD 5D7GA 3V03A 1IJGA 4LUHA 2DYMA 5FUOA 4FK5B 3V09A 2AJEA 5IIXA 2BXHA 2BXCA 3CX9A 2DBUA 1H5WA 2BXNA 3H3AA 2EFHA 4GDKB 4N0UD 2LOQA 4MBEC 4E99A 1HK5A 5HOZA 5IJEA 1UORA 5GIPA 4GDLB 2NQOA 4TQ1A 4GDXA 3WHQA 3WHRA 4IW1A 3WHSA 1MIYA 2BXGA 2BXLA 2XSIA 1E7GA 4C31B 1JNBA 2ROHA 2XVWA 3KIKA 5GINA 2BXFA 4HGKA 5GIOA 2I30A 1TF0A 2BXKA 2JUHA 3KJLA 1J7EA 2EFDA 3TDLA 4G01A 5B5TA 2Z8JA 2OZBB 3G9KD 4NAWB 4F5UA 4JK4A 4K71A 1HK4A 2BXAA 2DBXA 3H37A 4WA6B 1E7IA 1GNIA 3GQXA 1E7BA 2BX8A 2VDBA 2EFEA 4N3ZA 2BXBA 4ZBRA 3W1SA 1AO6A 4J2VA 2DYOA 4OTTA 5IIUA 3SIVB 4TQ0A 2QMCA 1E78A 1HK2A 4ZBQA 1E7CA 4M70B 2BXPA 1E7FA 3M99C 3JRYA 2NNWA 2XVVA 1GNJA 2Z8IA 2V36A 3GQUA 1O9XA 1HK1A 5IFOA 1FOUA 1HK3A 5ID9A 3B9LA 1J78A 4LB2A 1MA9A 4ZBKA 3PLAA 4ZCGA 3GA9L 2BXQA 4F5TA 2Z8KA 4LA0A 1E7EA 4BKEA 5DQFA 4DHXB 4L8UA 3NVKA 4IW2A 4Z9OA 4K2CA 2DBWA 1E7HA 2BXEA 4S1YA 4G03A 2VUFA 3A73A 5IJ5A 4G04A 1LNSA 3B9MA 3SIUB 2E0XA 4HGMB 4Z69A 4LB9A 2XW1A 3SQJA 1BJ5A 1E7AA 3MHHB 1NT2B 2XVQA 2QM6A 2YDFA 1BM0A 1H9ZA 3MHSB 3NVMA 3UIVA 1KXPD 4FIPB 4PO0A 5GHKA 3ICXA 2QHBA 1VFIA 5IIHA 1HA2A 1N5UA 1KW2A 2BXMA 4FJCB 3A75A 3JQZA 2BXDA 4F5VA 2EFCA 2XMOA 3NMUA 2CKXA 2E0YA 4OTUA 2BXOA 3LU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NT2 B;  5GIP A;  5GIN A;  3ICX A;  2OZB B;  3GQX A;  3SIU B;  2NNW A;  4BY9 C;  5GIO A;  3NVK A;  3NVI A;  3NMU A;  3SIV B;  3PLA A;  3NVM A;  3GQU A; 
#chains in the Genus database with same CATH topology
 4EMX A;  4ZUX V;  2XVU A;  1MIW A;  3V08 A;  2VUE A;  1TXU A;  4OR0 A;  3VQI A;  2BXI A;  4W4U B;  2KBZ A;  5BPK A;  4L9K A;  4BY9 C;  2LQH A;  3LU7 A;  4F5S A;  2OT3 A;  5DBY A;  4OT2 A;  3FWC C;  1BKE A;  5IJF A;  4L9Q A;  1VZS A;  5ID7 A;  4GG2 A;  1LOT A;  2I2Z A;  2XW0 A;  4LUF A;  3FWB C;  1MIV A;  3FNM A;  3NVI A;  2DG5 A;  3LU8 A;  4ZC6 A;  4N0F D;  5D7G A;  3V03 A;  2GUT A;  1IJG A;  2DYM A;  4LUH A;  5FUO A;  4FK5 B;  3V09 A;  2AJE A;  1MM8 A;  5IIX A;  2BXH A;  2BXC A;  3CX9 A;  2DBU A;  1H5W A;  2BXN A;  3H3A A;  2EFH A;  4GDK B;  1SB0 A;  4N0U D;  2LOQ A;  4MBE C;  4E99 A;  1HK5 A;  5HOZ A;  5IJE A;  1UOR A;  5GIP A;  4GDL B;  2NQO A;  4TQ1 A;  4GDX A;  3WHQ A;  3WHR A;  4IW1 A;  3WHS A;  1MIY A;  2BXG A;  2BXL A;  2XSI A;  1E7G A;  4C31 B;  1JNB A;  2ROH A;  2XVW A;  3KIK A;  5GIN A;  2BXF A;  4HGK A;  5GIO A;  2I30 A;  1TF0 A;  2BXK A;  2JUH A;  3KJL A;  1J7E A;  2EFD A;  3TDL A;  4G01 A;  5B5T A;  2Z8J A;  2OZB B;  1MUH A;  3G9K D;  4NAW B;  4F5U A;  4JK4 A;  4K71 A;  1HK4 A;  2BXA A;  2DBX A;  4I9O A;  3H37 A;  4WA6 B;  1KDX A;  1E7I A;  1GNI A;  3GQX A;  1E7B A;  2BX8 A;  2VDB A;  2EFE A;  4N3Z A;  2LXS A;  2BXB A;  4ZBR A;  3W1S A;  1AO6 A;  4DM0 A;  4J2V A;  2DYO A;  4OTT A;  5IIU A;  3SIV B;  4TQ0 A;  2QMC A;  1E78 A;  1HK2 A;  4ZBQ A;  1E7C A;  4M70 B;  2BXP A;  1E7F A;  2LXT A;  3JRY A;  3M99 C;  2NNW A;  2XVV A;  1GNJ A;  2Z8I A;  2V36 A;  3GQU A;  1O9X A;  1HK1 A;  5IFO A;  1FOU A;  1HK3 A;  2AGH B;  5ID9 A;  3B9L A;  1J78 A;  4LB2 A;  1MA9 A;  4ZBK A;  3PLA A;  4ZCG A;  3GA9 L;  2BXQ A;  4F5T A;  2Z8K A;  4LA0 A;  1E7E A;  2KWF A;  4BKE A;  5DQF A;  4DHX B;  4L8U A;  2K0N A;  3NVK A;  4IW2 A;  4Z9O A;  4K2C A;  2DBW A;  1E7H A;  2BXE A;  4S1Y A;  4G03 A;  2VUF A;  3A73 A;  5IJ5 A;  1MUS A;  4G04 A;  1LNS A;  3B9M A;  3SIU B;  2E0X A;  4HGM B;  4Z69 A;  4LB9 A;  2XW1 A;  3SQJ A;  1BJ5 A;  1E7A A;  2LQI A;  3MHH B;  1NT2 B;  4D7X A;  2XVQ A;  2QM6 A;  2YDF A;  1BM0 A;  1H9Z A;  3MHS B;  3NVM A;  3UIV A;  3ECP A;  1KXP D;  3BPJ A;  4FIP B;  4PO0 A;  5GHK A;  3ICX A;  2QHB A;  1VFI A;  5IIH A;  1HA2 A;  1N5U A;  1KW2 A;  2BXM A;  4FJC B;  3A75 A;  3JQZ A;  2BXD A;  4F5V A;  2EFC A;  2XMO A;  3NMU A;  2CKX A;  2E0Y A;  4OTU A;  2BXO A;  3LU6 A; 
#chains in the Genus database with same CATH homology
 4EMX A;  4ZUX V;  2XVU A;  1MIW A;  3V08 A;  2VUE A;  1TXU A;  4OR0 A;  3VQI A;  2BXI A;  4W4U B;  2KBZ A;  5BPK A;  4L9K A;  4BY9 C;  3LU7 A;  4F5S A;  2OT3 A;  5DBY A;  4OT2 A;  3FWC C;  1BKE A;  5IJF A;  4L9Q A;  1VZS A;  5ID7 A;  4GG2 A;  1LOT A;  2I2Z A;  2XW0 A;  4LUF A;  3FWB C;  1MIV A;  3FNM A;  3NVI A;  2DG5 A;  3LU8 A;  4ZC6 A;  4N0F D;  5D7G A;  3V03 A;  1IJG A;  4LUH A;  2DYM A;  5FUO A;  4FK5 B;  3V09 A;  2AJE A;  5IIX A;  2BXH A;  2BXC A;  3CX9 A;  2DBU A;  1H5W A;  2BXN A;  3H3A A;  2EFH A;  4GDK B;  4N0U D;  2LOQ A;  4MBE C;  4E99 A;  1HK5 A;  5HOZ A;  5IJE A;  1UOR A;  5GIP A;  4GDL B;  2NQO A;  4TQ1 A;  4GDX A;  3WHQ A;  3WHR A;  4IW1 A;  3WHS A;  1MIY A;  2BXG A;  2BXL A;  2XSI A;  1E7G A;  4C31 B;  1JNB A;  2ROH A;  2XVW A;  3KIK A;  5GIN A;  2BXF A;  4HGK A;  5GIO A;  2I30 A;  1TF0 A;  2BXK A;  2JUH A;  3KJL A;  1J7E A;  2EFD A;  3TDL A;  4G01 A;  5B5T A;  2Z8J A;  2OZB B;  3G9K D;  4NAW B;  4F5U A;  4JK4 A;  4K71 A;  1HK4 A;  2BXA A;  2DBX A;  3H37 A;  4WA6 B;  1E7I A;  1GNI A;  3GQX A;  1E7B A;  2BX8 A;  2VDB A;  2EFE A;  4N3Z A;  2BXB A;  4ZBR A;  3W1S A;  1AO6 A;  4J2V A;  2DYO A;  4OTT A;  5IIU A;  3SIV B;  4TQ0 A;  2QMC A;  1E78 A;  1HK2 A;  4ZBQ A;  1E7C A;  4M70 B;  2BXP A;  1E7F A;  3M99 C;  3JRY A;  2NNW A;  2XVV A;  1GNJ A;  2Z8I A;  2V36 A;  3GQU A;  1O9X A;  1HK1 A;  5IFO A;  1FOU A;  1HK3 A;  5ID9 A;  3B9L A;  1J78 A;  4LB2 A;  1MA9 A;  4ZBK A;  3PLA A;  4ZCG A;  3GA9 L;  2BXQ A;  4F5T A;  2Z8K A;  4LA0 A;  1E7E A;  4BKE A;  5DQF A;  4DHX B;  4L8U A;  3NVK A;  4IW2 A;  4Z9O A;  4K2C A;  2DBW A;  1E7H A;  2BXE A;  4S1Y A;  4G03 A;  2VUF A;  3A73 A;  5IJ5 A;  4G04 A;  1LNS A;  3B9M A;  3SIU B;  2E0X A;  4HGM B;  4Z69 A;  4LB9 A;  2XW1 A;  3SQJ A;  1BJ5 A;  1E7A A;  3MHH B;  1NT2 B;  2XVQ A;  2QM6 A;  2YDF A;  1BM0 A;  1H9Z A;  3MHS B;  3NVM A;  3UIV A;  1KXP D;  4FIP B;  4PO0 A;  5GHK A;  3ICX A;  2QHB A;  1VFI A;  5IIH A;  1HA2 A;  1N5U A;  1KW2 A;  2BXM A;  4FJC B;  3A75 A;  3JQZ A;  2BXD A;  4F5V A;  2EFC A;  2XMO A;  3NMU A;  2CKX A;  2E0Y A;  4OTU A;  2BXO A;  3LU6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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