3SJ1X

Ppca m58d mutant
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
71
structure length
71
Chain Sequence
ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEDKKGPTKCGECHKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C7
publication title Pitfalls in the interpretation of structural changes in mutant proteins from crystal structures.
pubmed doi rcsb
source organism Geobacter sulfurreducens
total genus 14
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2011-06-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 3sj1X00
1OS6A 1AQEA 2EWKA 1GM4A 3OV0A 3SJ4X 1KWJA 2BQ4A 2KSUA 2N91A 1WR5A 2A3MA 2MZ9A 2EWUA 1F22A 3OUQA 19HCA 2LDOA 2YYWA 1GYOA 1HH5A 1MDVA 3BXUA 2Z47A 1LM2A 1UPDA 2EWIA 1J0PA 1NEWA 3H34A 4HB6A 3CARA 1QN0A 1I77A 2CYMA 2CVCA 3H33A 4HB8A 1A2IA 4HAJA 1EHJA 2FFNA 3SJ0X 2A3PA 2CDVA 3SJ1X 1WADA 1Z1NX 1OFWA 1OFYA 1DUWA 1GWSA 3SELX 1IT1A 4HC3A 2LZZA 3H4NA 1J0OA 3OUEA 2BPNA 2CTHA 1UP9A 1L3OA 4HBFA 2CY3A 1CZJA 2YXCA 1H29A 3CYRA 1GMBA 2KMYA 2E84A 3CAOA 1QN1A 2YYXA 1RWJA 1W7OA 4HDLA
chains in the Genus database with same CATH superfamily
1OS6A 1AQEA 2EWKA 1GM4A 3OV0A 3SJ4X 1KWJA 2BQ4A 2KSUA 2N91A 1WR5A 2A3MA 2MZ9A 2EWUA 1F22A 3OUQA 19HCA 2LDOA 2YYWA 1GYOA 1HH5A 1MDVA 3BXUA 2Z47A 1LM2A 1UPDA 2EWIA 1J0PA 1NEWA 3H34A 4HB6A 3CARA 1QN0A 1I77A 2CYMA 2CVCA 3H33A 4HB8A 1A2IA 4HAJA 1EHJA 2FFNA 3SJ0X 2A3PA 2CDVA 3SJ1X 1WADA 1Z1NX 1OFWA 1OFYA 1DUWA 1GWSA 3SELX 1IT1A 4HC3A 2LZZA 3H4NA 1J0OA 3OUEA 2BPNA 2CTHA 1UP9A 1L3OA 4HBFA 2CY3A 1CZJA 2YXCA 1H29A 3CYRA 1GMBA 2KMYA 2E84A 3CAOA 1QN1A 2YYXA 1RWJA 1W7OA 4HDLA
chains in the Genus database with same CATH topology
1OS6A 1AQEA 2EWKA 1GM4A 3OV0A 3SJ4X 1KWJA 2BQ4A 2KSUA 2N91A 1WR5A 2A3MA 2MZ9A 2EWUA 1F22A 3OUQA 19HCA 2LDOA 2YYWA 1GYOA 1HH5A 1MDVA 3BXUA 2Z47A 1LM2A 1UPDA 2EWIA 1J0PA 1NEWA 3H34A 4HB6A 3CARA 1QN0A 1I77A 2CYMA 2CVCA 3H33A 4HB8A 1A2IA 4HAJA 1EHJA 2FFNA 3SJ0X 2A3PA 2CDVA 3SJ1X 1WADA 1Z1NX 1OFWA 1OFYA 1DUWA 1GWSA 3SELX 1IT1A 4HC3A 2LZZA 3H4NA 1J0OA 3OUEA 2BPNA 2CTHA 1UP9A 1L3OA 4HBFA 2CY3A 1CZJA 2YXCA 1H29A 3CYRA 1GMBA 2KMYA 2E84A 3CAOA 1QN1A 2YYXA 1RWJA 1W7OA 4HDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OS6 A;  1AQE A;  2EWK A;  1GM4 A;  3OV0 A;  3SJ4 X;  1KWJ A;  2BQ4 A;  2KSU A;  2N91 A;  1WR5 A;  2A3M A;  2MZ9 A;  2EWU A;  1F22 A;  3OUQ A;  19HC A;  2LDO A;  2YYW A;  1GYO A;  1HH5 A;  1MDV A;  3BXU A;  2Z47 A;  1LM2 A;  1UPD A;  2EWI A;  1J0P A;  1NEW A;  3H34 A;  4HB6 A;  3CAR A;  1QN0 A;  1I77 A;  2CYM A;  2CVC A;  3H33 A;  4HB8 A;  1A2I A;  4HAJ A;  1EHJ A;  2FFN A;  3SJ0 X;  2A3P A;  2CDV A;  3SJ1 X;  1WAD A;  1Z1N X;  1OFW A;  1OFY A;  1DUW A;  1GWS A;  3SEL X;  1IT1 A;  4HC3 A;  2LZZ A;  3H4N A;  1J0O A;  3OUE A;  2BPN A;  2CTH A;  1UP9 A;  1L3O A;  4HBF A;  2CY3 A;  1CZJ A;  2YXC A;  1H29 A;  3CYR A;  1GMB A;  2KMY A;  2E84 A;  3CAO A;  1QN1 A;  2YYX A;  1RWJ A;  1W7O A;  4HDL A; 
#chains in the Genus database with same CATH topology
 1OS6 A;  1AQE A;  2EWK A;  1GM4 A;  3OV0 A;  3SJ4 X;  1KWJ A;  2BQ4 A;  2KSU A;  2N91 A;  1WR5 A;  2A3M A;  2MZ9 A;  2EWU A;  1F22 A;  3OUQ A;  19HC A;  2LDO A;  2YYW A;  1GYO A;  1HH5 A;  1MDV A;  3BXU A;  2Z47 A;  1LM2 A;  1UPD A;  2EWI A;  1J0P A;  1NEW A;  3H34 A;  4HB6 A;  3CAR A;  1QN0 A;  1I77 A;  2CYM A;  2CVC A;  3H33 A;  4HB8 A;  1A2I A;  4HAJ A;  1EHJ A;  2FFN A;  3SJ0 X;  2A3P A;  2CDV A;  3SJ1 X;  1WAD A;  1Z1N X;  1OFW A;  1OFY A;  1DUW A;  1GWS A;  3SEL X;  1IT1 A;  4HC3 A;  2LZZ A;  3H4N A;  1J0O A;  3OUE A;  2BPN A;  2CTH A;  1UP9 A;  1L3O A;  4HBF A;  2CY3 A;  1CZJ A;  2YXC A;  1H29 A;  3CYR A;  1GMB A;  2KMY A;  2E84 A;  3CAO A;  1QN1 A;  2YYX A;  1RWJ A;  1W7O A;  4HDL A; 
#chains in the Genus database with same CATH homology
 1OS6 A;  1AQE A;  2EWK A;  1GM4 A;  3OV0 A;  3SJ4 X;  1KWJ A;  2BQ4 A;  2KSU A;  2N91 A;  1WR5 A;  2A3M A;  2MZ9 A;  2EWU A;  1F22 A;  3OUQ A;  19HC A;  2LDO A;  2YYW A;  1GYO A;  1HH5 A;  1MDV A;  3BXU A;  2Z47 A;  1LM2 A;  1UPD A;  2EWI A;  1J0P A;  1NEW A;  3H34 A;  4HB6 A;  3CAR A;  1QN0 A;  1I77 A;  2CYM A;  2CVC A;  3H33 A;  4HB8 A;  1A2I A;  4HAJ A;  1EHJ A;  2FFN A;  3SJ0 X;  2A3P A;  2CDV A;  3SJ1 X;  1WAD A;  1Z1N X;  1OFW A;  1OFY A;  1DUW A;  1GWS A;  3SEL X;  1IT1 A;  4HC3 A;  2LZZ A;  3H4N A;  1J0O A;  3OUE A;  2BPN A;  2CTH A;  1UP9 A;  1L3O A;  4HBF A;  2CY3 A;  1CZJ A;  2YXC A;  1H29 A;  3CYR A;  1GMB A;  2KMY A;  2E84 A;  3CAO A;  1QN1 A;  2YYX A;  1RWJ A;  1W7O A;  4HDL A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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