3SO0A

Crystal structure of a mutant t41s of a betagamma-crystallin domain from clostridium beijerinckii
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
86
structure length
86
Chain Sequence
KAVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMSSLKVPSGWTVDVYENDNFTGTKWTYTSDTPWVGNDANDKMTSVKIYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Clostrillin
publication title Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
pubmed doi rcsb
source organism Clostridium beijerinckii
total genus 22
structure length 86
sequence length 86
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2011-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 3so0A00
1YTQA 1ZGTA 2NBRA 1A45A 4GCRA 4JGFA 3HZBA 4PSPA 4AKAA 4NI3A 1GCSA 4EL6A 2M3UA 1M8UA 3CW3A 2KFBA 1DSLA 2K1XA 1BLBA 1PRRA 2A5MA 1ELPA 1ZIEA 2V2UA 1BD7A 3HZ2A 3IAJA 3LWKA 1HDFA 1ZWMA 1H4AX 1HK0X 3ENUA 1I5IA 2BB2A 3SO0A 3I9HA 1GAMA 1AG4A 3ENTA 4FD9A 2M3TA 1HA4A 1OKIA 4W9AA 1YHPA 2JDGA 1ZWOA 2M3CA 4GR7A 2K1WA 1NPSA 4PSRA 1E7NA 4IAUA 4W9BA 1A5DA 1AMMA 5HT9A 2B1OA 2G98A 3QK3A 1A7HA 1PRSA 2DADA 1ZIQA 2KP5A 1ZIRA 3SNYA 5HT8A 3SO1A 3SNZA 2JDFA 2BV2A
chains in the Genus database with same CATH superfamily
1ZGTA 4AKAA 1M8UA 2K1XA 1BLBA 3LWKA 3IAJA 1HDFA 1H4AX 3ENUA 1BHUA 4W9BA 4PSRA 1PRSA 1GH5A 2DADA 2KP5A 1F53A 1ZIRA 3SO1A 3SNZA 4PSPA 4JGFA 4GCRA 3HZBA 2KFBA 2A5MA 1ELPA 1BD7A 2M3TA 1OKIA 4W9AA 5HT9A 2B1OA 1A7HA 1ZIQA 3SNYA 5HT8A 3UJZA 2BV2A 1YTQA 4NI3A 4EL6A 2M3UA 1PRRA 1ZIEA 1C01A 1WKTA 1HK0X 1I5IA 2BB2A 3I9HA 1YHPA 3SO0A 2M3CA 4IAUA 1AMMA 2G98A 2JDFA 1G6EA 2NBRA 1A45A 1GCSA 3CW3A 1DSLA 3HZ2A 2V2UA 1ZWMA 1GAMA 1AG4A 3ENTA 4FD9A 1HA4A 2JDGA 1ZWOA 4GR7A 2K1WA 1NPSA 1E7NA 1A5DA 3QK3A
chains in the Genus database with same CATH topology
1YTQA 1ZGTA 2NBRA 1A45A 4GCRA 4JGFA 3HZBA 4PSPA 4AKAA 4NI3A 1GCSA 4EL6A 2M3UA 1M8UA 3CW3A 2KFBA 1DSLA 2K1XA 1BLBA 1PRRA 2A5MA 1ELPA 1ZIEA 2V2UA 1BD7A 3HZ2A 3IAJA 3LWKA 1HDFA 1ZWMA 1H4AX 1HK0X 3ENUA 1I5IA 2BB2A 3SO0A 3I9HA 1GAMA 1AG4A 3ENTA 4FD9A 2M3TA 1HA4A 1OKIA 4W9AA 1YHPA 2JDGA 1ZWOA 2M3CA 4GR7A 2K1WA 1NPSA 4PSRA 1E7NA 4IAUA 4W9BA 1A5DA 1AMMA 5HT9A 2B1OA 2G98A 3QK3A 1A7HA 1PRSA 2DADA 1ZIQA 2KP5A 1ZIRA 3SNYA 5HT8A 3SO1A 3SNZA 2JDFA 2BV2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YTQ A;  1ZGT A;  2NBR A;  1A45 A;  4GCR A;  4JGF A;  3HZB A;  4PSP A;  4AKA A;  4NI3 A;  1GCS A;  4EL6 A;  2M3U A;  1M8U A;  3CW3 A;  2KFB A;  1DSL A;  2K1X A;  1BLB A;  1PRR A;  2A5M A;  1ELP A;  1ZIE A;  2V2U A;  1BD7 A;  3HZ2 A;  3IAJ A;  3LWK A;  1HDF A;  1ZWM A;  1H4A X;  1HK0 X;  3ENU A;  1I5I A;  2BB2 A;  3SO0 A;  3I9H A;  1GAM A;  1AG4 A;  3ENT A;  4FD9 A;  2M3T A;  1HA4 A;  1OKI A;  4W9A A;  1YHP A;  2JDG A;  1ZWO A;  2M3C A;  4GR7 A;  2K1W A;  1NPS A;  4PSR A;  1E7N A;  4IAU A;  4W9B A;  1A5D A;  1AMM A;  5HT9 A;  2B1O A;  2G98 A;  3QK3 A;  1A7H A;  1PRS A;  2DAD A;  1ZIQ A;  2KP5 A;  1ZIR A;  3SNY A;  5HT8 A;  3SO1 A;  3SNZ A;  2JDF A;  2BV2 A; 
#chains in the Genus database with same CATH topology
 1ZGT A;  4AKA A;  1M8U A;  2K1X A;  1BLB A;  3LWK A;  3IAJ A;  1HDF A;  1H4A X;  3ENU A;  1BHU A;  4W9B A;  4PSR A;  1PRS A;  1GH5 A;  2DAD A;  2KP5 A;  1F53 A;  1ZIR A;  3SO1 A;  3SNZ A;  4PSP A;  4JGF A;  4GCR A;  3HZB A;  2KFB A;  2A5M A;  1ELP A;  1BD7 A;  2M3T A;  1OKI A;  4W9A A;  5HT9 A;  2B1O A;  1A7H A;  1ZIQ A;  3SNY A;  5HT8 A;  3UJZ A;  2BV2 A;  1YTQ A;  4NI3 A;  4EL6 A;  2M3U A;  1PRR A;  1ZIE A;  1C01 A;  1WKT A;  1HK0 X;  1I5I A;  2BB2 A;  3I9H A;  1YHP A;  3SO0 A;  2M3C A;  4IAU A;  1AMM A;  2G98 A;  2JDF A;  1G6E A;  2NBR A;  1A45 A;  1GCS A;  3CW3 A;  1DSL A;  3HZ2 A;  2V2U A;  1ZWM A;  1GAM A;  1AG4 A;  3ENT A;  4FD9 A;  1HA4 A;  2JDG A;  1ZWO A;  4GR7 A;  2K1W A;  1NPS A;  1E7N A;  1A5D A;  3QK3 A; 
#chains in the Genus database with same CATH homology
 1YTQ A;  1ZGT A;  2NBR A;  1A45 A;  4GCR A;  4JGF A;  3HZB A;  4PSP A;  4AKA A;  4NI3 A;  1GCS A;  4EL6 A;  2M3U A;  1M8U A;  3CW3 A;  2KFB A;  1DSL A;  2K1X A;  1BLB A;  1PRR A;  2A5M A;  1ELP A;  1ZIE A;  2V2U A;  1BD7 A;  3HZ2 A;  3IAJ A;  3LWK A;  1HDF A;  1ZWM A;  1H4A X;  1HK0 X;  3ENU A;  1I5I A;  2BB2 A;  3SO0 A;  3I9H A;  1GAM A;  1AG4 A;  3ENT A;  4FD9 A;  2M3T A;  1HA4 A;  1OKI A;  4W9A A;  1YHP A;  2JDG A;  1ZWO A;  2M3C A;  4GR7 A;  2K1W A;  1NPS A;  4PSR A;  1E7N A;  4IAU A;  4W9B A;  1A5D A;  1AMM A;  5HT9 A;  2B1O A;  2G98 A;  3QK3 A;  1A7H A;  1PRS A;  2DAD A;  1ZIQ A;  2KP5 A;  1ZIR A;  3SNY A;  5HT8 A;  3SO1 A;  3SNZ A;  2JDF A;  2BV2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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